Wall clock time and date at job start Mon Mar 30 2020 03:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00188 * 2 1 4 4 H 1.48505 * 109.46903 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47279 * 299.99870 * 3 2 1 6 6 H 1.48498 * 109.47140 * 60.00237 * 3 2 1 7 7 C 1.37875 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00060 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47145 * 179.97438 * 9 7 2 11 11 N 1.32008 * 119.56287 * 270.01601 * 10 9 7 12 12 N 1.28749 * 121.35143 * 179.97438 * 11 10 9 13 13 C 1.32225 * 120.38613 * 359.73497 * 12 11 10 14 14 C 1.38715 * 119.12250 * 0.49693 * 13 12 11 15 15 C 1.50697 * 120.63284 * 179.78899 * 14 13 12 16 16 C 1.53175 * 109.54085 * 324.71678 * 15 14 13 17 17 C 1.53092 * 109.16344 * 176.84900 * 16 15 14 18 18 O 1.42905 * 109.41215 * 302.38824 * 17 16 15 19 19 C 1.42905 * 114.09831 * 61.16158 * 18 17 16 20 20 C 1.53098 * 109.41155 * 298.83847 * 19 18 17 21 21 N 1.32019 * 119.56775 * 90.00019 * 10 9 7 22 22 H 0.97007 * 119.99653 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47315 * 59.99205 * 9 7 2 24 24 H 1.09006 * 109.46879 * 299.99263 * 9 7 2 25 25 H 1.07998 * 120.44247 * 180.25552 * 13 12 11 26 26 H 1.08996 * 109.54186 * 204.54043 * 15 14 13 27 27 H 1.09004 * 109.52714 * 56.93920 * 16 15 14 28 28 H 1.09001 * 109.57654 * 296.78651 * 16 15 14 29 29 H 1.08997 * 109.48111 * 182.40965 * 17 16 15 30 30 H 1.09000 * 109.48212 * 62.37239 * 17 16 15 31 31 H 1.09000 * 109.47932 * 58.81878 * 19 18 17 32 32 H 1.08993 * 109.48024 * 178.86013 * 19 18 17 33 33 H 1.08996 * 109.52270 * 297.70307 * 20 19 18 34 34 H 1.08998 * 109.51931 * 177.51229 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 7 2.6537 -4.1395 -1.1477 12 7 3.4902 -5.1173 -1.1879 13 6 3.9519 -5.6489 -0.0687 14 6 3.5150 -5.1460 1.1480 15 6 4.0154 -5.7294 2.4442 16 6 4.2173 -7.2392 2.2824 17 6 4.7996 -7.8100 3.5781 18 8 6.0276 -7.1446 3.8806 19 6 5.8925 -5.7373 4.0892 20 6 5.3540 -5.0832 2.8141 21 7 2.6535 -4.1398 1.1488 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 4.6569 -6.4664 -0.1014 26 1 3.2877 -5.5414 3.2336 27 1 4.9060 -7.4285 1.4590 28 1 3.2594 -7.7153 2.0728 29 1 4.9854 -8.8769 3.4540 30 1 4.0925 -7.6564 4.3932 31 1 5.1996 -5.5565 4.9110 32 1 6.8655 -5.3110 4.3334 33 1 6.0657 -5.2289 2.0015 34 1 5.2086 -4.0166 2.9854 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261340052.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:29 Heat of formation + Delta-G solvation = 7.794915 kcal Electronic energy + Delta-G solvation = -17787.659664 eV Core-core repulsion = 14913.747324 eV Total energy + Delta-G solvation = -2873.912340 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.43140 -39.44816 -35.51199 -34.52831 -32.98339 -31.66352 -31.35451 -28.58256 -26.46062 -24.86634 -23.75656 -23.38805 -21.88797 -20.16894 -18.21502 -16.76322 -16.54405 -16.29246 -15.98655 -15.20443 -15.02394 -14.84063 -14.54149 -13.97200 -13.70967 -12.82484 -12.63481 -12.34624 -11.83222 -11.72080 -11.56144 -11.40610 -11.38127 -11.09988 -10.87547 -10.78079 -10.59626 -10.46646 -9.99396 -9.87149 -9.77162 -9.06381 -8.73558 -8.51575 -6.16369 -4.20135 1.01362 1.29098 3.25527 3.32577 3.37328 3.62972 3.91067 3.99131 4.28616 4.39176 4.45188 4.59860 4.63544 4.75290 4.81965 4.98994 5.09807 5.21013 5.26927 5.34602 5.43588 5.45423 5.57531 5.68018 5.77037 5.85077 5.93125 6.08531 6.54662 6.94772 7.24404 7.32532 7.61271 7.76306 8.06955 8.79054 9.07715 9.42760 10.94621 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028839 B = 0.005282 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.671460 B = 5300.141911 C = 5817.806141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.080 3.920 10 C 0.306 3.694 11 N -0.286 5.286 12 N -0.194 5.194 13 C -0.047 4.047 14 C 0.148 3.852 15 C -0.037 4.037 16 C -0.153 4.153 17 C 0.064 3.936 18 O -0.384 6.384 19 C 0.064 3.936 20 C -0.146 4.146 21 N -0.465 5.465 22 H 0.265 0.735 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.173 0.827 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.213 -13.908 8.018 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.041 3.959 10 C 0.040 3.960 11 N -0.134 5.134 12 N -0.043 5.043 13 C -0.215 4.215 14 C -0.009 4.009 15 C -0.057 4.057 16 C -0.191 4.191 17 C -0.013 4.013 18 O -0.302 6.302 19 C -0.013 4.013 20 C -0.185 4.185 21 N -0.186 5.186 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.190 0.810 26 H 0.117 0.883 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.812 -13.420 7.090 17.550 hybrid contribution 0.487 0.738 0.642 1.093 sum 9.298 -12.682 7.732 17.523 Atomic orbital electron populations 1.69948 1.05980 1.27148 1.49654 1.24920 0.94963 0.99263 0.94698 0.86358 0.79916 0.82921 0.77795 1.19794 1.20628 1.20712 1.20760 0.92771 0.89090 1.52324 0.92744 1.18320 0.91029 0.86376 1.00211 1.25965 0.92750 0.93692 0.83631 1.73722 1.07784 1.05314 1.26556 1.73669 1.02558 1.02267 1.25784 1.24673 1.02505 1.02919 0.91429 1.22420 0.91151 0.91177 0.96161 1.20129 0.97895 0.94311 0.93401 1.22345 1.02562 0.94351 0.99821 1.22561 0.86476 0.97037 0.95256 1.87934 1.31079 1.20360 1.90860 1.22588 1.01936 0.81009 0.95727 1.22232 0.95588 1.01260 0.99409 1.68924 1.09863 1.08276 1.31496 0.92532 0.92765 0.92909 0.81040 0.88282 0.90180 0.90232 0.88501 0.92839 0.92701 0.88443 0.90615 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.45 9.09 -34.44 -0.31 -14.76 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.08 2.11 5.44 -29.03 -0.16 1.95 16 10 C 0.31 7.19 6.90 -156.82 -1.08 6.11 16 11 N -0.29 -6.62 11.48 32.42 0.37 -6.24 16 12 N -0.19 -3.87 11.63 30.62 0.36 -3.52 16 13 C -0.05 -0.75 10.47 -17.21 -0.18 -0.93 16 14 C 0.15 2.43 5.83 -82.14 -0.48 1.95 16 15 C -0.04 -0.45 2.63 -91.59 -0.24 -0.69 16 16 C -0.15 -1.39 4.96 -26.59 -0.13 -1.52 16 17 C 0.06 0.52 6.84 37.20 0.25 0.77 16 18 O -0.38 -3.91 10.77 -35.23 -0.38 -4.29 16 19 C 0.06 0.59 6.84 37.21 0.25 0.84 16 20 C -0.15 -1.61 5.41 -26.59 -0.14 -1.75 16 21 N -0.46 -9.70 10.39 -6.85 -0.07 -9.77 16 22 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 23 H 0.05 1.49 8.14 -51.93 -0.42 1.06 16 24 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 25 H 0.17 2.00 6.39 -52.49 -0.34 1.67 16 26 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.08 0.69 6.44 -51.93 -0.33 0.36 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 288.58 15.07 4.35 4.35 Total: -1.00 -31.67 288.58 -6.41 -38.08 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -4.44 Total: -3.71 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.32 Total: -6.32 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 1.39 Total: -44.60 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.38 Total: -4.29 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.67 -6.41 -38.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261340052.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.875 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds