Wall clock time and date at job start Mon Mar 30 2020 04:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 3 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 3 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21514 * 119.99932 * 359.97438 * 14 13 3 16 16 C 1.48136 * 120.00312 * 180.02562 * 14 13 3 17 17 C 1.39764 * 121.14811 * 359.71260 * 16 14 13 18 18 N 1.31889 * 119.65736 * 179.71374 * 17 16 14 19 19 N 1.28279 * 122.33240 * 0.58994 * 18 17 16 20 20 C 1.31885 * 122.51464 * 359.69484 * 19 18 17 21 21 C 1.50706 * 120.01461 * 180.02562 * 20 19 18 22 22 C 1.38551 * 119.97220 * 359.97438 * 20 19 18 23 23 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 24 24 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 26 26 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 27 27 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 28 28 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 29 29 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 30 30 H 1.08005 * 120.16784 * 359.97438 * 17 16 14 31 31 H 1.09007 * 109.46539 * 269.97339 * 21 20 19 32 32 H 1.08997 * 109.46962 * 29.97026 * 21 20 19 33 33 H 1.09001 * 109.47447 * 149.97916 * 21 20 19 34 34 H 1.07995 * 121.09209 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 5.4535 0.8896 1.3415 9 14 3.0960 0.1144 2.5731 10 1 2.8802 -1.3232 2.2702 11 1 3.7905 0.2462 3.8792 12 1 1.7851 0.8090 2.6374 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3409 2.6320 -0.4327 16 6 0.0433 3.3262 -2.6330 17 6 0.9188 3.3818 -3.7210 18 7 0.5372 3.9736 -4.8362 19 7 -0.6172 4.5183 -4.9634 20 6 -1.5099 4.5227 -3.9927 21 6 -2.8500 5.1791 -4.2038 22 6 -1.2157 3.9226 -2.7790 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 5.8763 0.4948 2.1200 29 1 2.2721 2.1230 -1.9977 30 1 1.9013 2.9388 -3.6502 31 1 -2.7920 6.2266 -3.9078 32 1 -3.1247 5.1137 -5.2566 33 1 -3.6023 4.6719 -3.5997 34 1 -1.9330 3.9159 -1.9718 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276441477.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:20 Heat of formation + Delta-G solvation = -4.345095 kcal Electronic energy + Delta-G solvation = -17950.108573 eV Core-core repulsion = 15075.669803 eV Total energy + Delta-G solvation = -2874.438770 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.34741 -40.68622 -37.26070 -35.14641 -34.67501 -34.25510 -32.93313 -29.56181 -29.27099 -26.37840 -24.93623 -24.44484 -22.48062 -21.46841 -19.67242 -18.68964 -18.28694 -17.48143 -17.13372 -16.66474 -16.38823 -15.98908 -15.48286 -15.06236 -14.71236 -14.47964 -14.15801 -13.84347 -13.75135 -13.67837 -13.21896 -13.00110 -12.79404 -12.43387 -12.09264 -11.87045 -11.58192 -11.34621 -11.26865 -11.26682 -10.87863 -10.82128 -10.67785 -9.92178 -8.38504 -6.45186 -0.77738 -0.24424 1.28263 1.36563 1.45232 1.69139 2.07927 2.25838 2.51973 2.91705 2.97472 3.22319 3.41424 3.54105 3.76166 4.13040 4.21781 4.29629 4.33704 4.46350 4.68613 4.77056 4.80168 4.86535 4.99335 5.01646 5.08779 5.18573 5.27811 5.33830 5.49084 5.52975 6.08424 6.55310 6.67860 7.09298 7.25954 7.51826 8.76480 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.038417 B = 0.005595 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.669232 B = 5003.243609 C = 5432.740451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 C 0.250 3.750 4 H 0.031 0.969 5 C -0.537 4.537 6 H 0.058 0.942 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.935 3.065 10 H -0.259 1.259 11 H -0.295 1.295 12 H -0.256 1.256 13 N -0.687 5.687 14 C 0.554 3.446 15 O -0.559 6.559 16 C -0.130 4.130 17 C 0.065 3.935 18 N -0.261 5.261 19 N -0.257 5.257 20 C 0.070 3.930 21 C -0.099 4.099 22 C -0.056 4.056 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.270 0.730 29 H 0.407 0.593 30 H 0.192 0.808 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.351 4.070 -8.340 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.178 4.178 3 C 0.145 3.855 4 H 0.049 0.951 5 C -0.575 4.575 6 H 0.076 0.924 7 C -0.169 4.169 8 N -0.571 5.571 9 Si 0.762 3.238 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.180 1.180 13 N -0.336 5.336 14 C 0.339 3.661 15 O -0.439 6.439 16 C -0.144 4.144 17 C -0.101 4.101 18 N -0.100 5.100 19 N -0.100 5.100 20 C -0.075 4.075 21 C -0.156 4.156 22 C -0.086 4.086 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.243 0.757 30 H 0.209 0.791 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -15.307 4.414 -9.128 18.361 hybrid contribution 0.422 -0.865 1.979 2.201 sum -14.886 3.550 -7.149 16.891 Atomic orbital electron populations 1.21783 0.95093 1.00803 1.01638 1.22229 0.95948 0.98219 1.01373 1.18902 0.93496 0.89836 0.83232 0.95140 1.21258 0.90171 1.39028 1.07015 0.92368 1.25539 0.95703 0.95794 0.99838 1.69973 1.10386 1.46017 1.30749 0.86055 0.79456 0.80016 0.78264 1.18522 1.22246 1.18020 1.45950 1.15047 1.55018 1.17586 1.18139 0.82348 0.78752 0.86841 1.90746 1.52024 1.60550 1.40547 1.21283 0.96986 1.00759 0.95407 1.24784 1.01275 0.95018 0.89015 1.72992 1.09244 1.06263 1.21548 1.72751 0.97539 1.11782 1.27928 1.23503 0.99261 0.95068 0.89681 1.20880 0.88108 1.01396 1.05265 1.22767 0.95617 0.91340 0.98891 0.92908 0.92173 0.93975 0.91141 0.93509 0.92044 0.75651 0.79080 0.88100 0.89136 0.87754 0.80519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.51 71.98 0.61 -4.24 16 2 C -0.14 -5.64 5.11 30.59 0.16 -5.48 16 3 C 0.25 11.06 1.83 44.25 0.08 11.14 16 4 H 0.03 1.51 6.63 -2.39 -0.02 1.49 16 5 C -0.54 -28.01 9.31 25.60 0.24 -27.77 16 6 H 0.06 3.24 7.98 -2.91 -0.02 3.21 16 7 C 0.03 1.71 5.45 84.66 0.46 2.17 16 8 N -0.93 -54.70 13.96 21.45 0.30 -54.40 16 9 Si 0.93 43.01 24.41 68.60 1.67 44.68 16 10 H -0.26 -11.23 6.84 99.48 0.68 -10.55 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.26 -11.50 6.52 99.48 0.65 -10.85 16 13 N -0.69 -24.90 4.98 -448.73 -2.24 -27.14 16 14 C 0.55 18.81 6.37 86.87 0.55 19.36 16 15 O -0.56 -21.77 13.62 -3.76 -0.05 -21.82 16 16 C -0.13 -3.57 5.92 -19.83 -0.12 -3.69 16 17 C 0.06 1.68 10.84 85.05 0.92 2.61 16 18 N -0.26 -7.43 11.49 -56.53 -0.65 -8.08 16 19 N -0.26 -6.83 11.40 -47.68 -0.54 -7.38 16 20 C 0.07 1.47 6.86 42.63 0.29 1.76 16 21 C -0.10 -1.15 10.19 71.24 0.73 -0.42 16 22 C -0.06 -1.28 9.43 22.79 0.22 -1.07 16 23 H 0.05 1.84 5.64 -2.39 -0.01 1.82 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.04 1.59 7.84 -2.39 -0.02 1.58 16 26 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.05 1.99 3.24 -2.39 -0.01 1.99 16 28 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 29 H 0.41 12.85 6.69 -92.71 -0.62 12.23 16 30 H 0.19 4.16 6.54 -2.91 -0.02 4.14 16 31 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 0.78 8.09 -2.39 -0.02 0.76 16 34 H 0.18 3.44 7.80 -2.91 -0.02 3.41 16 Total: -1.00 -65.93 281.49 3.06 -62.87 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.43 Total: 16.88 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 4.14 Total: -5.63 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -3.13 Total: -96.99 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.67 Total: 44.68 kcal Total: -65.93 3.06 -62.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276441477.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.525 kcal (2) G-P(sol) polarization free energy of solvation -65.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds