Wall clock time and date at job start Mon Mar 30 2020 04:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38818 * 120.41663 * 2 1 4 4 C 1.38782 * 118.50962 * 179.97438 * 3 2 1 5 5 N 1.32125 * 119.15999 * 0.02562 * 4 3 2 6 6 C 1.32444 * 120.77405 * 0.02562 * 5 4 3 7 7 C 1.48535 * 119.18674 * 180.02562 * 6 5 4 8 8 O 1.21470 * 119.99774 * 186.73497 * 7 6 5 9 9 N 1.34773 * 120.00371 * 6.73817 * 7 6 5 10 10 C 1.46502 * 119.99872 * 5.54855 * 9 7 6 11 11 C 1.46497 * 120.00357 * 185.55781 * 9 7 6 12 12 H 1.09003 * 109.47268 * 359.97438 * 11 9 7 13 13 C 1.53008 * 109.46860 * 239.99853 * 11 9 7 14 14 C 1.50696 * 109.47789 * 119.99687 * 11 9 7 15 15 H 1.08002 * 119.99917 * 359.97438 * 14 11 9 16 16 C 1.37872 * 120.00271 * 179.97438 * 14 11 9 17 17 N 1.31520 * 120.00149 * 0.02562 * 16 14 11 18 18 Si 1.86809 * 120.00033 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46634 * 59.99905 * 18 16 14 20 20 H 1.48493 * 109.47095 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46947 * 300.00118 * 18 16 14 22 22 N 1.32098 * 120.42171 * 180.27294 * 2 1 3 23 23 H 1.09001 * 109.46964 * 90.00072 * 1 2 3 24 24 H 1.09005 * 109.47156 * 209.99653 * 1 2 3 25 25 H 1.08994 * 109.47527 * 329.99567 * 1 2 3 26 26 H 1.08005 * 120.74821 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.42308 * 180.02562 * 4 3 2 28 28 H 1.08997 * 109.47643 * 275.40029 * 10 9 7 29 29 H 1.08999 * 109.47118 * 35.40051 * 10 9 7 30 30 H 1.09004 * 109.46939 * 155.39798 * 10 9 7 31 31 H 1.08996 * 109.47332 * 59.99745 * 13 11 9 32 32 H 1.09001 * 109.46791 * 179.97438 * 13 11 9 33 33 H 1.09002 * 109.46945 * 299.99314 * 13 11 9 34 34 H 0.96995 * 119.99452 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2098 1.1971 0.0000 4 6 3.5969 1.1509 0.0005 5 7 4.2019 -0.0236 0.0005 6 6 3.5006 -1.1472 -0.0005 7 6 4.2171 -2.4483 0.0001 8 8 3.5950 -3.4842 -0.1242 9 7 5.5573 -2.4796 0.1386 10 6 6.2947 -1.2431 0.4101 11 6 6.2768 -3.7499 0.0175 12 1 5.5666 -4.5521 -0.1830 13 6 7.0197 -4.0416 1.3230 14 6 7.2672 -3.6605 -1.1148 15 1 7.3519 -2.7487 -1.6874 16 6 8.0651 -4.7427 -1.4198 17 7 7.9617 -5.8533 -0.7229 18 14 9.2922 -4.6321 -2.8240 19 1 10.2593 -3.5387 -2.5510 20 1 10.0225 -5.9193 -2.9457 21 1 8.5707 -4.3499 -4.0908 22 7 2.1759 -1.1391 -0.0054 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8901 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6889 2.1433 0.0004 27 1 4.1744 2.0635 0.0010 28 1 6.5022 -0.7301 -0.5290 29 1 5.6965 -0.5969 1.0525 30 1 7.2340 -1.4823 0.9087 31 1 6.3034 -4.1063 2.1420 32 1 7.5547 -4.9870 1.2331 33 1 7.7299 -3.2396 1.5239 34 1 8.5233 -6.6144 -0.9373 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349547977.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:45 Heat of formation + Delta-G solvation = 9.807004 kcal Electronic energy + Delta-G solvation = -18084.682871 eV Core-core repulsion = 15210.857782 eV Total energy + Delta-G solvation = -2873.825089 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.33968 -40.35812 -37.31581 -35.71010 -34.65831 -33.62281 -31.43248 -29.39318 -27.78363 -27.33063 -26.42673 -24.05245 -23.10165 -20.67390 -18.81514 -18.60868 -17.95451 -17.33302 -16.84820 -16.79761 -16.25292 -15.51462 -15.49534 -14.76639 -14.43185 -14.25661 -14.01128 -13.85100 -13.49188 -13.17399 -13.07411 -12.96714 -12.72278 -12.70134 -12.21721 -12.13674 -11.95571 -11.65907 -11.22971 -10.87130 -10.53732 -10.51710 -10.17678 -9.41955 -8.15678 -6.33008 -0.55736 0.10702 1.41769 1.44900 1.52277 1.66323 1.87875 2.41983 2.78103 2.97241 3.12021 3.18306 3.57742 3.81607 4.09517 4.32804 4.52671 4.61062 4.72534 4.75001 4.80168 4.84513 4.88091 5.01780 5.06264 5.18148 5.39920 5.43630 5.57110 5.63537 5.97130 5.99675 6.11126 6.59560 6.71317 6.93007 7.17850 7.39298 8.89092 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.036124 B = 0.005566 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.917264 B = 5029.016642 C = 5198.546433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.145 3.855 3 C -0.184 4.184 4 C 0.133 3.867 5 N -0.498 5.498 6 C 0.271 3.729 7 C 0.553 3.447 8 O -0.577 6.577 9 N -0.573 5.573 10 C 0.105 3.895 11 C 0.260 3.740 12 H 0.011 0.989 13 C -0.131 4.131 14 C -0.541 4.541 15 H 0.060 0.940 16 C 0.017 3.983 17 N -0.916 5.916 18 Si 0.970 3.030 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.279 1.279 22 N -0.514 5.514 23 H 0.097 0.903 24 H 0.068 0.932 25 H 0.121 0.879 26 H 0.205 0.795 27 H 0.222 0.778 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.019 0.981 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.326 19.849 2.712 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.001 4.001 3 C -0.205 4.205 4 C -0.031 4.031 5 N -0.217 5.217 6 C 0.001 3.999 7 C 0.337 3.663 8 O -0.456 6.456 9 N -0.303 5.303 10 C -0.037 4.037 11 C 0.159 3.841 12 H 0.029 0.971 13 C -0.190 4.190 14 C -0.580 4.580 15 H 0.078 0.922 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.794 3.206 19 H -0.185 1.185 20 H -0.206 1.206 21 H -0.204 1.204 22 N -0.232 5.232 23 H 0.115 0.885 24 H 0.087 0.913 25 H 0.140 0.860 26 H 0.222 0.778 27 H 0.239 0.761 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.054 18.222 2.672 20.522 hybrid contribution 0.227 0.005 -0.727 0.762 sum -8.827 18.227 1.945 20.345 Atomic orbital electron populations 1.20935 0.84866 1.05301 1.04822 1.22678 0.99671 0.87727 0.90016 1.23523 0.96284 1.01377 0.99343 1.24327 0.93530 0.96231 0.89032 1.68871 1.40627 0.99235 1.12958 1.22344 0.87681 0.92648 0.97203 1.18047 0.82820 0.86846 0.78562 1.90686 1.67608 1.34821 1.52512 1.48156 1.04873 1.11653 1.65612 1.21985 0.96215 0.84058 1.01450 1.18730 0.90231 0.80280 0.94899 0.97142 1.21885 0.99110 1.02896 0.95107 1.21476 1.20500 1.00044 1.15946 0.92218 1.25757 0.98946 0.94515 0.99090 1.70017 1.40545 1.03778 1.41135 0.85441 0.78603 0.77803 0.78751 1.18503 1.20583 1.20420 1.68030 1.08752 1.33483 1.12925 0.88496 0.91321 0.86050 0.77796 0.76127 0.92573 0.88770 0.91735 0.96206 0.90799 0.93014 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 10.22 71.24 0.73 -0.74 16 2 C 0.14 3.35 6.82 42.66 0.29 3.64 16 3 C -0.18 -2.72 9.87 22.54 0.22 -2.50 16 4 C 0.13 2.40 11.30 84.78 0.96 3.36 16 5 N -0.50 -15.08 6.19 -189.10 -1.17 -16.25 16 6 C 0.27 10.66 7.42 137.68 1.02 11.68 16 7 C 0.55 27.60 7.69 86.99 0.67 28.27 16 8 O -0.58 -33.85 16.21 -3.62 -0.06 -33.91 16 9 N -0.57 -27.76 2.75 -829.42 -2.28 -30.04 16 10 C 0.10 3.95 8.31 127.77 1.06 5.01 16 11 C 0.26 14.53 2.62 44.25 0.12 14.65 16 12 H 0.01 0.70 6.91 -2.39 -0.02 0.68 16 13 C -0.13 -6.70 8.96 71.98 0.64 -6.06 16 14 C -0.54 -30.87 8.37 25.60 0.21 -30.65 16 15 H 0.06 3.33 7.65 -2.91 -0.02 3.31 16 16 C 0.02 0.94 5.30 84.65 0.45 1.39 16 17 N -0.92 -54.01 11.32 21.45 0.24 -53.77 16 18 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 19 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 N -0.51 -18.74 10.07 -177.25 -1.79 -20.53 16 23 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.12 0.73 8.10 -2.39 -0.02 0.71 16 26 H 0.21 0.71 8.06 -2.91 -0.02 0.69 16 27 H 0.22 1.69 8.06 -2.91 -0.02 1.67 16 28 H 0.06 2.05 7.98 -2.39 -0.02 2.03 16 29 H 0.09 3.08 5.79 -2.39 -0.01 3.07 16 30 H 0.06 2.38 6.44 -2.39 -0.02 2.36 16 31 H 0.02 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.07 4.09 6.07 -2.39 -0.01 4.08 16 33 H 0.05 2.38 6.67 -2.39 -0.02 2.36 16 34 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -80.60 288.74 4.46 -76.15 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 1.11 Total: 4.22 kcal Atomic # 6 Polarization: 21.68 SS G_CDS: 6.38 Total: 28.05 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -5.00 Total: -120.59 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.06 Total: -33.91 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -80.60 4.46 -76.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349547977.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.955 kcal (2) G-P(sol) polarization free energy of solvation -80.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds