Wall clock time and date at job start Mon Mar 30 2020 03:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00199 * 2 1 4 4 H 1.48496 * 109.47345 * 240.00761 * 3 2 1 5 5 H 1.48500 * 109.46931 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47170 * 120.00429 * 3 2 1 7 7 C 1.37882 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99597 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00053 * 359.97438 * 7 2 1 10 10 H 1.09007 * 110.43745 * 57.45820 * 9 7 2 11 11 C 1.54894 * 110.60148 * 294.84214 * 9 7 2 12 12 C 1.54882 * 102.74859 * 203.32417 * 11 9 7 13 13 C 1.54269 * 104.19847 * 37.94216 * 12 11 9 14 14 H 1.09000 * 110.07184 * 217.08470 * 13 12 11 15 15 N 1.46498 * 110.03201 * 95.67122 * 13 12 11 16 16 C 1.30278 * 119.99575 * 122.83548 * 15 13 12 17 17 N 1.38926 * 122.26498 * 0.24464 * 16 15 13 18 18 H 0.97000 * 121.81913 * 35.23248 * 17 16 15 19 19 C 1.39375 * 116.49992 * 215.42953 * 17 16 15 20 20 C 1.32953 * 119.92508 * 334.82428 * 19 17 16 21 21 N 1.38601 * 121.76904 * 0.24123 * 20 19 17 22 22 H 0.96998 * 120.03442 * 192.82665 * 21 20 19 23 23 C 1.35408 * 119.94093 * 12.84893 * 21 20 19 24 24 O 1.21568 * 121.47918 * 179.07854 * 23 21 20 25 25 C 1.53872 * 106.59642 * 336.38908 * 13 12 11 26 26 H 0.97002 * 119.99721 * 359.97438 * 1 2 3 27 27 H 1.08998 * 110.75369 * 321.64023 * 11 9 7 28 28 H 1.08999 * 110.75212 * 84.82094 * 11 9 7 29 29 H 1.09002 * 110.49033 * 279.26178 * 12 11 9 30 30 H 1.09002 * 110.48659 * 156.62110 * 12 11 9 31 31 H 1.08002 * 120.04054 * 155.10907 * 19 17 16 32 32 H 1.07999 * 119.11554 * 180.21584 * 20 19 17 33 33 H 1.09000 * 110.03593 * 119.28592 * 25 13 12 34 34 H 1.09007 * 110.03448 * 240.71783 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5845 -2.5539 -0.8614 11 6 0.4515 -2.6669 1.3155 12 6 0.2734 -4.2023 1.4138 13 6 1.6109 -4.7722 0.8981 14 1 1.4333 -5.6798 0.3213 15 7 2.5014 -5.0604 2.0251 16 6 2.9732 -6.2634 2.1913 17 7 2.6668 -7.3063 1.3261 18 1 2.5491 -7.1631 0.3740 19 6 2.5328 -8.5700 1.8984 20 6 3.1541 -8.8506 3.0398 21 7 3.9388 -7.9133 3.6930 22 1 4.5258 -8.1893 4.4141 23 6 3.8851 -6.6116 3.3237 24 8 4.5487 -5.7637 3.8882 25 6 2.2325 -3.6893 -0.0011 26 1 -0.4850 0.8401 0.0004 27 1 1.0212 -2.2889 2.1644 28 1 -0.5145 -2.1666 1.2469 29 1 -0.5509 -4.5321 0.7815 30 1 0.1049 -4.5013 2.4484 31 1 1.9286 -9.3221 1.4128 32 1 3.0440 -9.8351 3.4698 33 1 3.1967 -3.3783 0.4009 34 1 2.3557 -4.0711 -1.0147 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378725157.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:06 Heat of formation + Delta-G solvation = 7.671207 kcal Electronic energy + Delta-G solvation = -17848.843709 eV Core-core repulsion = 14974.926005 eV Total energy + Delta-G solvation = -2873.917704 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.70699 -37.99288 -37.20472 -35.26405 -32.98749 -31.89566 -29.05619 -28.12283 -27.31276 -24.82196 -23.56428 -22.34397 -19.62637 -19.07211 -18.52495 -17.90004 -17.46471 -16.68045 -15.96953 -15.49756 -14.99987 -14.50962 -13.93741 -13.66490 -13.57028 -13.20161 -12.51841 -12.17780 -11.78429 -11.60402 -11.02591 -10.93980 -10.75058 -10.55088 -10.47247 -10.28722 -9.94956 -9.65148 -9.37305 -9.10133 -9.06155 -8.72827 -8.27682 -7.42117 -5.92885 -3.94276 1.49362 1.87407 2.75727 3.11614 3.31108 3.39516 3.43070 3.47401 4.10380 4.52447 4.88088 5.07653 5.34386 5.41475 5.46110 5.67067 5.74219 5.78541 6.27744 6.43050 6.55820 6.58209 6.62736 6.73487 6.83502 6.99268 7.07915 7.28811 7.34115 7.42169 7.77686 7.82407 7.95486 8.09824 8.20367 8.54025 9.07139 9.68935 11.16958 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.038295 B = 0.005018 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.995234 B = 5578.506956 C = 5966.685143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.052 3.948 10 H 0.030 0.970 11 C -0.096 4.096 12 C -0.112 4.112 13 C 0.067 3.933 14 H 0.038 0.962 15 N -0.455 5.455 16 C 0.317 3.683 17 N -0.698 5.698 18 H 0.413 0.587 19 C 0.046 3.954 20 C -0.018 4.018 21 N -0.649 5.649 22 H 0.414 0.586 23 C 0.569 3.431 24 O -0.490 6.490 25 C -0.107 4.107 26 H 0.259 0.741 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.066 0.934 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 -20.487 3.457 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.033 3.967 10 H 0.048 0.952 11 C -0.134 4.134 12 C -0.150 4.150 13 C -0.043 4.043 14 H 0.057 0.943 15 N -0.177 5.177 16 C 0.035 3.965 17 N -0.337 5.337 18 H 0.252 0.748 19 C -0.076 4.076 20 C -0.139 4.139 21 N -0.296 5.296 22 H 0.251 0.749 23 C 0.352 3.648 24 O -0.359 6.359 25 C -0.145 4.145 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.085 0.915 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.061 -18.834 4.069 19.510 hybrid contribution 0.331 0.019 -0.641 0.721 sum 3.391 -18.815 3.429 19.424 Atomic orbital electron populations 1.69947 1.05861 1.26447 1.50858 1.24959 0.94834 0.98957 0.95147 0.86701 0.79642 0.83297 0.78632 1.20379 1.21383 1.20221 1.21144 0.92729 0.90469 1.50423 0.92756 1.19423 0.92257 0.91167 0.93829 0.95158 1.22418 1.01176 0.89754 1.00020 1.22459 0.93269 1.00069 0.99223 1.22564 0.93749 0.97711 0.90261 0.94348 1.72812 1.09536 1.15194 1.20148 1.22765 0.95677 0.85992 0.92035 1.43204 1.74556 1.05906 1.10039 0.74783 1.21239 1.02078 0.88572 0.95707 1.20891 1.00253 0.95171 0.97609 1.43292 1.42764 1.06541 1.36997 0.74866 1.18640 0.82113 0.81957 0.82081 1.90900 1.43049 1.48336 1.53608 1.22425 1.01329 0.95512 0.95228 0.93122 0.92818 0.91487 0.92104 0.93016 0.82436 0.82473 0.91482 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 12.29 55.43 0.68 -25.59 16 2 C 0.06 1.79 5.35 -17.82 -0.10 1.69 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.59 8.47 -34.44 -0.29 -14.88 16 8 H 0.05 1.56 7.55 -52.49 -0.40 1.16 16 9 C 0.05 1.33 2.71 -90.11 -0.24 1.09 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.10 -2.34 5.75 -24.74 -0.14 -2.48 16 12 C -0.11 -2.24 6.54 -25.07 -0.16 -2.41 16 13 C 0.07 1.27 3.56 -66.81 -0.24 1.03 16 14 H 0.04 0.61 6.06 -51.93 -0.31 0.30 16 15 N -0.46 -8.88 10.03 -50.13 -0.50 -9.38 16 16 C 0.32 5.04 7.45 -152.50 -1.14 3.90 16 17 N -0.70 -7.96 5.09 -9.54 -0.05 -8.00 16 18 H 0.41 4.26 7.53 -40.82 -0.31 3.95 16 19 C 0.05 0.36 11.08 -15.95 -0.18 0.18 16 20 C -0.02 -0.13 11.05 -16.32 -0.18 -0.31 16 21 N -0.65 -6.48 5.42 -12.18 -0.07 -6.55 16 22 H 0.41 3.08 8.93 -40.82 -0.36 2.71 16 23 C 0.57 8.73 8.09 -11.27 -0.09 8.64 16 24 O -0.49 -9.43 17.97 5.31 0.10 -9.33 16 25 C -0.11 -2.33 6.15 -25.61 -0.16 -2.49 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.05 1.42 8.05 -51.93 -0.42 1.00 16 28 H 0.07 1.74 7.55 -51.93 -0.39 1.35 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 31 H 0.16 0.66 8.06 -52.49 -0.42 0.23 16 32 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.07 1.59 7.43 -51.93 -0.39 1.20 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 287.87 15.07 4.34 4.34 Total: -1.00 -34.22 287.87 -7.69 -41.90 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.25 Total: 1.53 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -2.92 Total: -6.04 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.06 Total: -49.52 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.10 Total: -9.33 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.22 -7.69 -41.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378725157.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.574 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds