Wall clock time and date at job start Mon Mar 30 2020 04:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21517 * 120.00419 * 0.02562 * 14 13 3 16 16 C 1.48151 * 119.99921 * 180.02562 * 14 13 3 17 17 C 1.39139 * 119.68100 * 179.97438 * 16 14 13 18 18 C 1.38788 * 119.22906 * 180.02562 * 17 16 14 19 19 C 1.38294 * 118.58280 * 0.02562 * 18 17 16 20 20 C 1.39459 * 119.29182 * 0.02562 * 19 18 17 21 21 N 1.38974 * 119.63924 * 179.97438 * 20 19 18 22 22 N 1.32086 * 120.72396 * 359.72207 * 20 19 18 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 29 29 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 30 30 H 1.07999 * 120.38727 * 359.97438 * 17 16 14 31 31 H 1.08000 * 120.71547 * 180.02562 * 18 17 16 32 32 H 1.07994 * 120.36082 * 180.02562 * 19 18 17 33 33 H 0.97000 * 119.99940 * 359.97438 * 21 20 19 34 34 H 0.97009 * 120.00187 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3408 2.6326 -0.4323 16 6 0.0431 3.3263 -2.6329 17 6 -1.2155 3.9090 -2.7447 18 6 -1.5732 4.5262 -3.9352 19 6 -0.6604 4.5393 -4.9741 20 6 0.5842 3.9357 -4.7964 21 7 1.5068 3.9442 -5.8357 22 7 0.8976 3.3604 -3.6495 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 5.8770 0.4816 2.1128 29 1 2.2720 2.1232 -1.9977 30 1 -1.9062 3.8807 -1.9150 31 1 -2.5437 4.9864 -4.0481 32 1 -0.9086 5.0119 -5.9128 33 1 1.2833 4.3681 -6.6791 34 1 2.3742 3.5263 -5.7177 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379202617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:06 Heat of formation + Delta-G solvation = 3.223490 kcal Electronic energy + Delta-G solvation = -18003.798842 eV Core-core repulsion = 15129.688271 eV Total energy + Delta-G solvation = -2874.110572 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36816 -38.70428 -35.39998 -34.57272 -32.81239 -32.11742 -31.20879 -29.28829 -27.50314 -24.56365 -22.82544 -22.47345 -20.98074 -19.59302 -18.21423 -17.38805 -16.54620 -16.00622 -15.64983 -15.55342 -14.95106 -14.52196 -14.33842 -13.87918 -13.44126 -13.18187 -12.87525 -12.33213 -12.05593 -11.85681 -11.73239 -11.06410 -10.87740 -10.79315 -10.58572 -9.94709 -9.86270 -9.79200 -9.48542 -9.17328 -9.07940 -8.70648 -8.04958 -7.88581 -6.16314 -4.18358 0.89555 1.47148 3.25156 3.27748 3.37368 3.38731 3.44185 3.91120 4.20159 4.35763 4.57122 4.95120 5.10361 5.17031 5.21884 5.49497 5.63813 5.98077 6.01941 6.07343 6.20426 6.27078 6.52070 6.70904 6.73920 6.88457 6.99804 7.13207 7.29291 7.33430 7.38278 7.55410 8.08356 8.27019 8.61106 8.81167 8.97559 9.44455 10.95839 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032007 B = 0.006067 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.605271 B = 4613.973111 C = 5181.256178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.239 3.761 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.675 5.675 14 C 0.554 3.446 15 O -0.543 6.543 16 C 0.141 3.859 17 C -0.177 4.177 18 C -0.042 4.042 19 C -0.226 4.226 20 C 0.399 3.601 21 N -0.853 5.853 22 N -0.519 5.519 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.032 0.968 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.267 0.733 29 H 0.405 0.595 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.406 0.594 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.383 5.562 -13.448 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.136 3.864 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.322 5.322 14 C 0.337 3.663 15 O -0.421 6.421 16 C 0.002 3.998 17 C -0.200 4.200 18 C -0.068 4.068 19 C -0.252 4.252 20 C 0.160 3.840 21 N -0.398 5.398 22 N -0.240 5.240 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.240 0.760 30 H 0.162 0.838 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.235 0.765 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -10.939 5.075 -12.488 17.360 hybrid contribution -0.579 -0.071 -0.143 0.601 sum -11.518 5.004 -12.630 17.811 Atomic orbital electron populations 1.21883 0.96934 0.99091 1.02267 1.22284 0.94385 0.99841 1.01180 1.19235 0.95814 0.88605 0.82771 0.93145 1.21052 0.88539 1.39645 1.07848 0.90104 1.24826 0.94865 0.95163 0.97641 1.69868 1.08683 1.44627 1.29797 0.86909 0.81023 0.79967 0.80881 1.20234 1.22190 1.18388 1.46077 1.14424 1.53666 1.18054 1.17878 0.83177 0.79457 0.85743 1.90745 1.51940 1.60516 1.38908 1.21164 0.90660 0.95483 0.92465 1.21838 0.97553 1.01255 0.99384 1.21292 0.98802 0.94924 0.91805 1.21469 0.94588 1.07605 1.01493 1.18281 0.87947 0.90407 0.87333 1.42174 1.18071 1.65670 1.13867 1.67087 1.35566 1.21501 0.99799 0.92987 0.92770 0.94909 0.92692 0.92212 0.92332 0.75966 0.83790 0.84524 0.85141 0.76453 0.76470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.67 16 2 C -0.14 -3.17 5.11 -26.74 -0.14 -3.30 16 3 C 0.24 5.87 1.83 -69.09 -0.13 5.75 16 4 H 0.05 1.35 6.63 -51.93 -0.34 1.00 16 5 C -0.53 -14.78 9.31 -34.44 -0.32 -15.10 16 6 H 0.08 2.38 7.98 -52.49 -0.42 1.96 16 7 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 8 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 9 Si 0.88 22.01 24.41 -169.99 -4.15 17.86 16 10 H -0.28 -6.65 6.83 56.52 0.39 -6.27 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 13 N -0.68 -14.57 5.01 -55.79 -0.28 -14.85 16 14 C 0.55 11.34 6.38 -12.19 -0.08 11.26 16 15 O -0.54 -12.15 13.45 5.35 0.07 -12.08 16 16 C 0.14 2.42 6.75 -83.02 -0.56 1.86 16 17 C -0.18 -2.52 9.62 -39.04 -0.38 -2.89 16 18 C -0.04 -0.46 10.16 -39.36 -0.40 -0.86 16 19 C -0.23 -2.36 9.94 -39.11 -0.39 -2.75 16 20 C 0.40 5.01 7.74 -155.19 -1.20 3.80 16 21 N -0.85 -7.59 9.07 31.13 0.28 -7.30 16 22 N -0.52 -8.23 9.57 -9.00 -0.09 -8.32 16 23 H 0.05 1.07 5.65 -51.93 -0.29 0.77 16 24 H 0.05 1.16 7.84 -51.93 -0.41 0.76 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 1.31 3.22 -51.93 -0.17 1.14 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.41 8.33 7.87 -40.82 -0.32 8.01 16 30 H 0.14 2.01 7.63 -52.49 -0.40 1.61 16 31 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.41 2.27 8.82 -40.82 -0.36 1.91 16 34 H 0.41 3.57 8.95 -40.82 -0.37 3.20 16 LS Contribution 282.04 15.07 4.25 4.25 Total: -1.00 -32.27 282.04 -6.46 -38.73 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -3.95 Total: 10.52 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -3.37 Total: -2.77 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.69 Total: -56.50 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.08 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.15 Total: 17.86 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.27 -6.46 -38.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379202617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.953 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds