Wall clock time and date at job start Mon Mar 30 2020 04:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21517 * 120.00419 * 0.02562 * 14 13 3 16 16 C 1.48151 * 119.99921 * 180.02562 * 14 13 3 17 17 C 1.39139 * 119.68100 * 179.97438 * 16 14 13 18 18 C 1.38788 * 119.22906 * 180.02562 * 17 16 14 19 19 C 1.38294 * 118.58280 * 0.02562 * 18 17 16 20 20 C 1.39459 * 119.29182 * 0.02562 * 19 18 17 21 21 N 1.38974 * 119.63924 * 179.97438 * 20 19 18 22 22 N 1.32086 * 120.72396 * 359.72207 * 20 19 18 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 29 29 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 30 30 H 1.07999 * 120.38727 * 359.97438 * 17 16 14 31 31 H 1.08000 * 120.71547 * 180.02562 * 18 17 16 32 32 H 1.07994 * 120.36082 * 180.02562 * 19 18 17 33 33 H 0.97000 * 119.99940 * 359.97438 * 21 20 19 34 34 H 0.97009 * 120.00187 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3408 2.6326 -0.4323 16 6 0.0431 3.3263 -2.6329 17 6 -1.2155 3.9090 -2.7447 18 6 -1.5732 4.5262 -3.9352 19 6 -0.6604 4.5393 -4.9741 20 6 0.5842 3.9357 -4.7964 21 7 1.5068 3.9442 -5.8357 22 7 0.8976 3.3604 -3.6495 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 5.8770 0.4816 2.1128 29 1 2.2720 2.1232 -1.9977 30 1 -1.9062 3.8807 -1.9150 31 1 -2.5437 4.9864 -4.0481 32 1 -0.9086 5.0119 -5.9128 33 1 1.2833 4.3681 -6.6791 34 1 2.3742 3.5263 -5.7177 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379202617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:06 Heat of formation + Delta-G solvation = -21.945965 kcal Electronic energy + Delta-G solvation = -18004.890272 eV Core-core repulsion = 15129.688271 eV Total energy + Delta-G solvation = -2875.202001 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.54868 -40.16650 -37.17664 -35.52930 -34.47595 -33.76005 -32.74068 -30.32416 -29.41693 -25.86962 -24.48980 -23.64684 -22.52649 -21.32453 -19.76268 -18.34181 -18.28298 -17.44533 -16.98392 -16.75583 -16.45511 -16.05948 -15.57116 -15.28919 -14.95647 -14.86186 -14.16630 -13.98047 -13.72983 -13.65003 -13.00807 -12.92810 -12.77108 -12.41099 -11.86873 -11.74769 -11.46686 -11.27129 -11.17847 -10.86418 -10.76724 -10.39432 -9.79678 -8.82751 -8.38378 -6.44626 -0.19531 0.53633 1.27563 1.35261 1.46073 1.90374 2.26341 2.31616 2.63081 2.96147 3.04261 3.50242 3.96458 4.16182 4.22403 4.28120 4.30807 4.43081 4.56438 4.62498 4.80994 4.98443 5.07396 5.11356 5.22049 5.30547 5.38949 5.49999 5.60838 5.63366 6.11032 6.38409 6.45800 6.56131 6.85035 7.15922 7.29884 7.40380 8.77126 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032007 B = 0.006067 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.605271 B = 4613.973111 C = 5181.256178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 C 0.246 3.754 4 H 0.027 0.973 5 C -0.536 4.536 6 H 0.050 0.950 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.939 3.061 10 H -0.257 1.257 11 H -0.291 1.291 12 H -0.258 1.258 13 N -0.681 5.681 14 C 0.554 3.446 15 O -0.569 6.569 16 C 0.106 3.894 17 C -0.180 4.180 18 C -0.035 4.035 19 C -0.204 4.204 20 C 0.385 3.615 21 N -0.839 5.839 22 N -0.550 5.550 23 H 0.048 0.952 24 H 0.042 0.958 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.271 0.729 29 H 0.408 0.592 30 H 0.140 0.860 31 H 0.179 0.821 32 H 0.175 0.825 33 H 0.423 0.577 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.663 5.959 -15.291 21.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.142 3.858 4 H 0.045 0.955 5 C -0.574 4.574 6 H 0.069 0.931 7 C -0.170 4.170 8 N -0.573 5.573 9 Si 0.765 3.235 10 H -0.183 1.183 11 H -0.218 1.218 12 H -0.182 1.182 13 N -0.329 5.329 14 C 0.340 3.660 15 O -0.449 6.449 16 C -0.031 4.031 17 C -0.205 4.205 18 C -0.060 4.060 19 C -0.229 4.229 20 C 0.144 3.856 21 N -0.385 5.385 22 N -0.272 5.272 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.243 0.757 30 H 0.158 0.842 31 H 0.197 0.803 32 H 0.192 0.808 33 H 0.256 0.744 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -13.227 5.485 -14.378 20.292 hybrid contribution 0.149 -0.060 0.231 0.281 sum -13.078 5.425 -14.147 20.015 Atomic orbital electron populations 1.21764 0.95018 1.00767 1.01579 1.22195 0.96040 0.98171 1.01066 1.18906 0.93450 0.89908 0.83554 0.95512 1.21248 0.90239 1.38861 1.07050 0.93144 1.25576 0.95851 0.95724 0.99844 1.69980 1.10343 1.46056 1.30882 0.85995 0.79343 0.80011 0.78110 1.18282 1.21779 1.18230 1.45936 1.15396 1.54473 1.17072 1.18424 0.82085 0.78546 0.86992 1.90704 1.52416 1.61426 1.40373 1.20641 0.92404 0.98337 0.91699 1.21952 0.96278 1.01325 1.00908 1.21741 1.00524 0.93614 0.90143 1.21982 0.92935 1.05153 1.02835 1.18708 0.89534 0.90357 0.86978 1.42176 1.17487 1.65069 1.13772 1.66910 1.36169 1.23240 1.00868 0.93251 0.93910 0.91938 0.93340 0.91666 0.91992 0.75682 0.84204 0.80330 0.80787 0.74362 0.76476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.41 8.51 71.98 0.61 -4.80 16 2 C -0.14 -6.20 5.11 30.59 0.16 -6.04 16 3 C 0.25 12.40 1.83 44.24 0.08 12.48 16 4 H 0.03 1.48 6.63 -2.39 -0.02 1.47 16 5 C -0.54 -30.80 9.31 25.60 0.24 -30.57 16 6 H 0.05 3.13 7.98 -2.91 -0.02 3.10 16 7 C 0.03 1.73 5.45 84.66 0.46 2.19 16 8 N -0.93 -57.47 13.96 21.45 0.30 -57.17 16 9 Si 0.94 45.73 24.41 68.60 1.67 47.41 16 10 H -0.26 -11.72 6.83 99.48 0.68 -11.04 16 11 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 12 H -0.26 -12.42 6.53 99.48 0.65 -11.77 16 13 N -0.68 -30.44 5.01 -448.70 -2.25 -32.69 16 14 C 0.55 23.23 6.38 86.88 0.55 23.78 16 15 O -0.57 -26.07 13.45 -3.77 -0.05 -26.12 16 16 C 0.11 3.63 6.75 41.84 0.28 3.91 16 17 C -0.18 -4.89 9.62 22.62 0.22 -4.67 16 18 C -0.03 -0.62 10.16 22.41 0.23 -0.40 16 19 C -0.20 -3.37 9.94 22.58 0.22 -3.15 16 20 C 0.39 8.73 7.74 133.25 1.03 9.77 16 21 N -0.84 -12.80 9.07 -55.42 -0.50 -13.31 16 22 N -0.55 -17.19 9.57 -182.38 -1.75 -18.94 16 23 H 0.05 2.00 5.65 -2.39 -0.01 1.99 16 24 H 0.04 1.80 7.84 -2.39 -0.02 1.79 16 25 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 26 H 0.05 2.26 3.22 -2.39 -0.01 2.25 16 27 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 28 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.41 17.56 7.87 -92.71 -0.73 16.83 16 30 H 0.14 3.81 7.63 -2.91 -0.02 3.79 16 31 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.42 3.25 8.82 -92.71 -0.82 2.43 16 34 H 0.41 6.52 8.95 -92.70 -0.83 5.69 16 Total: -1.00 -72.44 282.04 0.22 -72.23 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -1.30 Total: 26.07 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 4.09 Total: 2.51 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -4.20 Total: -122.10 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.05 Total: -26.12 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.67 Total: 47.41 kcal Total: -72.44 0.22 -72.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379202617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.283 kcal (2) G-P(sol) polarization free energy of solvation -72.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds