Wall clock time and date at job start Mon Mar 30 2020 04:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35368 * 127.24810 * 2 1 4 4 N 1.35039 * 107.22437 * 180.25982 * 3 2 1 5 5 H 0.96998 * 124.88035 * 179.72670 * 4 3 2 6 6 N 1.28464 * 110.23142 * 359.72556 * 4 3 2 7 7 C 1.31801 * 110.07404 * 0.02562 * 6 4 3 8 8 C 1.47722 * 126.51811 * 180.02562 * 7 6 4 9 9 O 1.21565 * 120.00030 * 185.86877 * 8 7 6 10 10 N 1.34774 * 119.99382 * 5.86872 * 8 7 6 11 11 C 1.46499 * 120.00745 * 5.91389 * 10 8 7 12 12 C 1.50698 * 109.47018 * 274.14744 * 11 10 8 13 13 H 1.08006 * 120.00077 * 359.71766 * 12 11 10 14 14 C 1.37871 * 119.99958 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00489 * 359.72163 * 14 12 11 16 16 Si 1.86802 * 120.00008 * 179.72181 * 14 12 11 17 17 H 1.48498 * 109.47172 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47182 * 119.99807 * 16 14 12 19 19 H 1.48500 * 109.47196 * 240.00005 * 16 14 12 20 20 C 1.46502 * 119.99473 * 185.91084 * 10 8 7 21 21 C 1.53006 * 117.49844 * 16.41867 * 20 10 8 22 22 C 1.53001 * 117.50017 * 307.75903 * 20 10 8 23 23 H 1.08999 * 109.47243 * 270.18502 * 1 2 3 24 24 H 1.09007 * 109.47117 * 30.18795 * 1 2 3 25 25 H 1.09002 * 109.46944 * 150.18263 * 1 2 3 26 26 H 1.07994 * 126.38925 * 359.97438 * 3 2 1 27 27 H 1.08997 * 109.47360 * 154.14595 * 11 10 8 28 28 H 1.08997 * 109.47103 * 34.14360 * 11 10 8 29 29 H 0.96996 * 120.00551 * 180.02562 * 15 14 12 30 30 H 1.09004 * 115.55326 * 162.08982 * 20 10 8 31 31 H 1.08996 * 117.49547 * 359.97438 * 21 20 10 32 32 H 1.08999 * 117.49538 * 145.01998 * 21 20 10 33 33 H 1.09008 * 117.49992 * 214.97952 * 22 20 10 34 34 H 1.08999 * 117.49930 * 359.97190 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5951 0.6152 -0.0058 5 1 4.3887 1.1729 -0.0110 6 7 3.5997 -0.6695 -0.0036 7 6 2.3635 -1.1263 0.0031 8 6 1.9505 -2.5446 0.0081 9 8 0.7745 -2.8356 -0.0934 10 7 2.8775 -3.5159 0.1253 11 6 4.2775 -3.1659 0.3774 12 6 4.9696 -2.8884 -0.9322 13 1 4.4226 -2.9695 -1.8599 14 6 6.3025 -2.5361 -0.9464 15 7 6.9686 -2.4369 0.1832 16 14 7.1624 -2.1997 -2.5702 17 1 6.1993 -2.3775 -3.6865 18 1 7.6772 -0.8068 -2.5785 19 1 8.2940 -3.1468 -2.7366 20 6 2.4850 -4.9218 0.0005 21 6 1.1246 -5.2221 -0.6322 22 6 1.3278 -5.4124 0.8730 23 1 -0.3634 0.0033 1.0276 24 1 -0.3634 0.8884 -0.5168 25 1 -0.3633 -0.8916 -0.5110 26 1 2.0221 2.1138 -0.0004 27 1 4.7740 -3.9945 0.8823 28 1 4.3221 -2.2774 1.0073 29 1 7.9062 -2.1887 0.1733 30 1 3.2974 -5.6210 -0.1975 31 1 0.5216 -4.3735 -0.9552 32 1 1.0421 -6.1189 -1.2461 33 1 1.3788 -6.4344 1.2487 34 1 0.8589 -4.6892 1.5402 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380801318.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:26 Heat of formation + Delta-G solvation = 86.578161 kcal Electronic energy + Delta-G solvation = -18708.243521 eV Core-core repulsion = 15837.747479 eV Total energy + Delta-G solvation = -2870.496042 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.99557 -39.22870 -35.67614 -34.10041 -32.44605 -32.05634 -30.30699 -26.98838 -26.52591 -24.03568 -22.63653 -21.78731 -21.42835 -19.82015 -18.21749 -17.39220 -16.48795 -16.03992 -15.28480 -14.98560 -14.38846 -14.25335 -13.71981 -13.09994 -12.91981 -12.64439 -12.53300 -12.35259 -12.04715 -11.80610 -11.29001 -11.07714 -10.80671 -10.76720 -10.50739 -10.13125 -9.77869 -9.48230 -9.42520 -8.81183 -8.70634 -8.39204 -8.25512 -7.41142 -6.00252 -4.00354 2.41401 2.61324 3.25641 3.34658 3.40331 3.48704 3.95723 4.11173 4.45032 4.65567 5.11348 5.23006 5.35145 5.46722 5.58493 5.66294 5.71277 5.90387 6.03115 6.12926 6.19648 6.29510 6.37588 6.58902 6.65241 6.85968 6.99232 7.04933 7.41410 7.59954 7.81713 7.92523 8.26698 8.38315 8.60809 8.99342 9.11628 9.60881 11.07839 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.010798 C = 0.007281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.710089 B = 2592.365778 C = 3844.581645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.156 4.156 3 C -0.046 4.046 4 N -0.392 5.392 5 H 0.442 0.558 6 N -0.170 5.170 7 C -0.025 4.025 8 C 0.602 3.398 9 O -0.561 6.561 10 N -0.558 5.558 11 C 0.238 3.762 12 C -0.497 4.497 13 H 0.054 0.946 14 C 0.067 3.933 15 N -0.895 5.895 16 Si 0.887 3.113 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.285 1.285 20 C 0.088 3.912 21 C -0.199 4.199 22 C -0.194 4.194 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.172 0.828 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.259 0.741 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.890 4.374 0.816 9.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.167 4.167 3 C -0.188 4.188 4 N -0.106 5.106 5 H 0.285 0.715 6 N -0.006 5.006 7 C -0.185 4.185 8 C 0.390 3.610 9 O -0.442 6.442 10 N -0.285 5.285 11 C 0.119 3.881 12 C -0.536 4.536 13 H 0.072 0.928 14 C -0.134 4.134 15 N -0.535 5.535 16 Si 0.715 3.285 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.211 1.211 20 C -0.018 4.018 21 C -0.236 4.236 22 C -0.233 4.233 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.189 0.811 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.144 0.856 31 H 0.153 0.847 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.194 3.890 0.837 8.221 hybrid contribution 0.535 0.909 -0.931 1.407 sum -6.659 4.799 -0.094 8.209 Atomic orbital electron populations 1.20092 0.88916 1.02500 1.01593 1.20286 0.96957 0.90896 1.08551 1.22540 0.85059 0.99838 1.11410 1.43692 1.07889 1.05623 1.53402 0.71489 1.74725 1.21374 0.91321 1.13146 1.21860 0.89581 0.94894 1.12196 1.16987 0.84619 0.83039 0.76394 1.90488 1.17749 1.82313 1.53602 1.47607 1.11009 1.03157 1.66700 1.19683 0.73628 0.97196 0.97589 1.21294 0.94689 1.45174 0.92460 0.92773 1.24759 0.97145 0.95666 0.95821 1.69938 1.09368 1.49042 1.25137 0.86628 0.79568 0.77689 0.84586 1.20000 1.21314 1.21141 1.21567 0.91837 0.84159 1.04203 1.23759 1.00795 1.03880 0.95160 1.23203 1.04349 1.01219 0.94543 0.92238 0.92782 0.90018 0.81117 0.95058 0.92357 0.93159 0.85601 0.84723 0.90125 0.89456 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 9.98 36.00 0.36 -0.73 16 2 C -0.16 -2.75 6.25 -104.41 -0.65 -3.41 16 3 C -0.05 -0.67 11.97 -17.16 -0.21 -0.88 16 4 N -0.39 -6.55 6.83 30.47 0.21 -6.35 16 5 H 0.44 5.93 8.96 -190.44 -1.71 4.23 16 6 N -0.17 -3.68 7.85 33.42 0.26 -3.42 16 7 C -0.02 -0.53 6.71 -82.76 -0.56 -1.08 16 8 C 0.60 13.56 7.44 -12.39 -0.09 13.46 16 9 O -0.56 -12.40 10.83 5.31 0.06 -12.34 16 10 N -0.56 -12.66 2.83 -168.62 -0.48 -13.14 16 11 C 0.24 6.00 4.78 -5.20 -0.02 5.97 16 12 C -0.50 -13.31 7.81 -34.44 -0.27 -13.58 16 13 H 0.05 1.52 7.81 -52.48 -0.41 1.11 16 14 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 16 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.09 1.74 6.58 -67.93 -0.45 1.29 16 21 C -0.20 -3.58 9.63 -26.69 -0.26 -3.83 16 22 C -0.19 -3.37 9.88 -26.69 -0.26 -3.64 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 25 H 0.08 1.37 6.63 -51.93 -0.34 1.02 16 26 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 27 H 0.03 0.82 8.04 -51.93 -0.42 0.40 16 28 H 0.06 1.55 5.89 -51.93 -0.31 1.24 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.13 2.38 8.14 -51.93 -0.42 1.96 16 31 H 0.14 2.72 5.21 -52.13 -0.27 2.45 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 34 H 0.09 1.74 7.60 -51.93 -0.39 1.34 16 LS Contribution 286.21 15.07 4.31 4.31 Total: -1.00 -30.79 286.21 -7.95 -38.74 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.52 Total: 4.99 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.51 Total: -4.72 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.73 Total: -47.07 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.06 Total: -12.34 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.79 -7.95 -38.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380801318.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.318 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds