Wall clock time and date at job start Mon Mar 30 2020 04:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35368 * 127.24810 * 2 1 4 4 N 1.35039 * 107.22437 * 180.25982 * 3 2 1 5 5 H 0.96998 * 124.88035 * 179.72670 * 4 3 2 6 6 N 1.28464 * 110.23142 * 359.72556 * 4 3 2 7 7 C 1.31801 * 110.07404 * 0.02562 * 6 4 3 8 8 C 1.47722 * 126.51811 * 180.02562 * 7 6 4 9 9 O 1.21565 * 120.00030 * 185.86877 * 8 7 6 10 10 N 1.34774 * 119.99382 * 5.86872 * 8 7 6 11 11 C 1.46499 * 120.00745 * 5.91389 * 10 8 7 12 12 C 1.50698 * 109.47018 * 274.14744 * 11 10 8 13 13 H 1.08006 * 120.00077 * 359.71766 * 12 11 10 14 14 C 1.37871 * 119.99958 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00489 * 359.72163 * 14 12 11 16 16 Si 1.86802 * 120.00008 * 179.72181 * 14 12 11 17 17 H 1.48498 * 109.47172 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47182 * 119.99807 * 16 14 12 19 19 H 1.48500 * 109.47196 * 240.00005 * 16 14 12 20 20 C 1.46502 * 119.99473 * 185.91084 * 10 8 7 21 21 C 1.53006 * 117.49844 * 16.41867 * 20 10 8 22 22 C 1.53001 * 117.50017 * 307.75903 * 20 10 8 23 23 H 1.08999 * 109.47243 * 270.18502 * 1 2 3 24 24 H 1.09007 * 109.47117 * 30.18795 * 1 2 3 25 25 H 1.09002 * 109.46944 * 150.18263 * 1 2 3 26 26 H 1.07994 * 126.38925 * 359.97438 * 3 2 1 27 27 H 1.08997 * 109.47360 * 154.14595 * 11 10 8 28 28 H 1.08997 * 109.47103 * 34.14360 * 11 10 8 29 29 H 0.96996 * 120.00551 * 180.02562 * 15 14 12 30 30 H 1.09004 * 115.55326 * 162.08982 * 20 10 8 31 31 H 1.08996 * 117.49547 * 359.97438 * 21 20 10 32 32 H 1.08999 * 117.49538 * 145.01998 * 21 20 10 33 33 H 1.09008 * 117.49992 * 214.97952 * 22 20 10 34 34 H 1.08999 * 117.49930 * 359.97190 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5951 0.6152 -0.0058 5 1 4.3887 1.1729 -0.0110 6 7 3.5997 -0.6695 -0.0036 7 6 2.3635 -1.1263 0.0031 8 6 1.9505 -2.5446 0.0081 9 8 0.7745 -2.8356 -0.0934 10 7 2.8775 -3.5159 0.1253 11 6 4.2775 -3.1659 0.3774 12 6 4.9696 -2.8884 -0.9322 13 1 4.4226 -2.9695 -1.8599 14 6 6.3025 -2.5361 -0.9464 15 7 6.9686 -2.4369 0.1832 16 14 7.1624 -2.1997 -2.5702 17 1 6.1993 -2.3775 -3.6865 18 1 7.6772 -0.8068 -2.5785 19 1 8.2940 -3.1468 -2.7366 20 6 2.4850 -4.9218 0.0005 21 6 1.1246 -5.2221 -0.6322 22 6 1.3278 -5.4124 0.8730 23 1 -0.3634 0.0033 1.0276 24 1 -0.3634 0.8884 -0.5168 25 1 -0.3633 -0.8916 -0.5110 26 1 2.0221 2.1138 -0.0004 27 1 4.7740 -3.9945 0.8823 28 1 4.3221 -2.2774 1.0073 29 1 7.9062 -2.1887 0.1733 30 1 3.2974 -5.6210 -0.1975 31 1 0.5216 -4.3735 -0.9552 32 1 1.0421 -6.1189 -1.2461 33 1 1.3788 -6.4344 1.2487 34 1 0.8589 -4.6892 1.5402 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380801318.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:25 Heat of formation + Delta-G solvation = 67.160333 kcal Electronic energy + Delta-G solvation = -18709.085541 eV Core-core repulsion = 15837.747479 eV Total energy + Delta-G solvation = -2871.338062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.38813 -40.86986 -37.28054 -35.89772 -34.01487 -33.74654 -31.75311 -28.93859 -27.81709 -25.64421 -24.57909 -23.25241 -22.91387 -21.15029 -19.77206 -18.77343 -18.51395 -17.74670 -16.88261 -16.52993 -16.26595 -15.73239 -15.37650 -14.55678 -14.39666 -14.22378 -13.96871 -13.81614 -13.62733 -13.42120 -12.96021 -12.83260 -12.55810 -12.37832 -12.16693 -12.03106 -11.37453 -11.24239 -11.03014 -10.56095 -10.35700 -10.13234 -9.59991 -9.13512 -8.06447 -6.13506 0.83302 1.35564 1.37798 1.40662 1.50717 2.11712 2.40425 2.49030 2.56265 3.14018 3.24755 3.64830 3.94112 4.07508 4.17369 4.27399 4.40471 4.58863 4.74881 4.79175 4.86322 4.99056 5.02585 5.13690 5.17800 5.35903 5.37727 5.46668 5.68424 5.81534 6.02458 6.21560 6.41843 6.58827 6.89367 7.16964 7.42782 7.52467 9.00661 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.010798 C = 0.007281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.710089 B = 2592.365778 C = 3844.581645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.180 4.180 3 C -0.011 4.011 4 N -0.384 5.384 5 H 0.454 0.546 6 N -0.220 5.220 7 C -0.059 4.059 8 C 0.590 3.410 9 O -0.565 6.565 10 N -0.567 5.567 11 C 0.258 3.742 12 C -0.496 4.496 13 H 0.034 0.966 14 C 0.031 3.969 15 N -0.920 5.920 16 Si 0.944 3.056 17 H -0.281 1.281 18 H -0.277 1.277 19 H -0.280 1.280 20 C 0.054 3.946 21 C -0.189 4.189 22 C -0.173 4.173 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.228 0.772 27 H 0.012 0.988 28 H 0.044 0.956 29 H 0.262 0.738 30 H 0.130 0.870 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 5.582 0.306 10.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.190 4.190 3 C -0.154 4.154 4 N -0.100 5.100 5 H 0.300 0.700 6 N -0.057 5.057 7 C -0.219 4.219 8 C 0.379 3.621 9 O -0.446 6.446 10 N -0.295 5.295 11 C 0.137 3.863 12 C -0.536 4.536 13 H 0.052 0.948 14 C -0.168 4.168 15 N -0.561 5.561 16 Si 0.771 3.229 17 H -0.207 1.207 18 H -0.203 1.203 19 H -0.206 1.206 20 C -0.050 4.050 21 C -0.226 4.226 22 C -0.211 4.211 23 H 0.084 0.916 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.244 0.756 27 H 0.030 0.970 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.147 0.853 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.728 5.088 0.327 9.258 hybrid contribution 0.647 0.593 -0.753 1.156 sum -7.082 5.681 -0.426 9.089 Atomic orbital electron populations 1.20073 0.87275 1.02901 1.02159 1.20729 0.98344 0.90423 1.09528 1.23274 0.83261 1.01500 1.07363 1.43762 1.09497 1.04590 1.52121 0.69982 1.74583 1.22073 0.93666 1.15354 1.22026 0.90776 0.95194 1.13877 1.17342 0.84659 0.83857 0.76259 1.90477 1.17605 1.82723 1.53833 1.47584 1.10098 1.04587 1.67190 1.19245 0.74890 0.95630 0.96527 1.21238 0.94928 1.45290 0.92109 0.94752 1.25332 0.97560 0.95399 0.98546 1.70024 1.09694 1.49625 1.26722 0.85735 0.78327 0.77981 0.80832 1.20660 1.20251 1.20633 1.21848 0.92983 0.83108 1.07070 1.23712 0.98623 1.04136 0.96145 1.23214 1.01659 1.02354 0.93883 0.91561 0.89317 0.92581 0.75554 0.97023 0.93843 0.92902 0.85251 0.86947 0.87203 0.86062 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.87 9.98 71.24 0.71 -1.15 16 2 C -0.18 -6.09 6.25 -19.72 -0.12 -6.21 16 3 C -0.01 -0.28 11.97 83.54 1.00 0.72 16 4 N -0.38 -12.29 6.83 -57.51 -0.39 -12.68 16 5 H 0.45 11.44 8.96 -220.00 -1.97 9.47 16 6 N -0.22 -9.60 7.85 -48.17 -0.38 -9.98 16 7 C -0.06 -2.57 6.71 42.46 0.29 -2.28 16 8 C 0.59 27.40 7.44 86.75 0.65 28.04 16 9 O -0.57 -25.65 10.83 -3.92 -0.04 -25.69 16 10 N -0.57 -26.64 2.83 -805.67 -2.28 -28.92 16 11 C 0.26 13.45 4.78 85.63 0.41 13.86 16 12 C -0.50 -27.24 7.81 25.60 0.20 -27.04 16 13 H 0.03 1.99 7.81 -2.91 -0.02 1.96 16 14 C 0.03 1.65 5.46 84.65 0.46 2.11 16 15 N -0.92 -51.65 13.29 21.44 0.28 -51.36 16 16 Si 0.94 43.38 29.54 68.60 2.03 45.41 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 C 0.05 2.18 6.58 44.99 0.30 2.47 16 21 C -0.19 -6.70 9.63 30.62 0.29 -6.40 16 22 C -0.17 -5.85 9.88 30.62 0.30 -5.55 16 23 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.06 1.86 6.63 -2.39 -0.02 1.84 16 26 H 0.23 3.24 8.06 -2.91 -0.02 3.21 16 27 H 0.01 0.64 8.04 -2.39 -0.02 0.63 16 28 H 0.04 2.41 5.89 -2.39 -0.01 2.40 16 29 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 30 H 0.13 4.97 8.14 -2.39 -0.02 4.95 16 31 H 0.11 4.58 5.21 -5.56 -0.03 4.55 16 32 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 33 H 0.12 3.27 8.14 -2.38 -0.02 3.25 16 34 H 0.08 2.86 7.60 -2.39 -0.02 2.84 16 Total: -1.00 -68.34 286.21 2.84 -65.50 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.86 Total: 19.16 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 4.48 Total: -1.43 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -2.77 Total: -102.94 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.04 Total: -25.69 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -68.34 2.84 -65.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380801318.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.661 kcal (2) G-P(sol) polarization free energy of solvation -68.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds