Wall clock time and date at job start Mon Mar 30 2020 03:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38680 * 120.41696 * 2 1 4 4 C 1.38629 * 118.41911 * 180.02562 * 3 2 1 5 5 C 1.38227 * 119.15823 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.61311 * 179.97438 * 5 4 3 7 7 N 1.46893 * 109.47176 * 94.99911 * 6 5 4 8 8 C 1.46903 * 110.99924 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47245 * 179.97438 * 8 7 6 10 10 O 1.21301 * 119.99879 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00204 * 179.97438 * 9 8 7 12 12 C 1.37099 * 120.00275 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99797 * 359.97438 * 12 11 9 14 14 C 1.38953 * 120.00254 * 180.02562 * 12 11 9 15 15 N 1.31407 * 119.99635 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99968 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47249 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47154 * 119.99697 * 16 14 12 19 19 H 1.48498 * 109.46813 * 239.99687 * 16 14 12 20 20 N 1.31848 * 120.76781 * 0.24928 * 5 4 3 21 21 C 1.31888 * 121.72485 * 359.47999 * 20 5 4 22 22 H 1.09005 * 109.47035 * 89.99695 * 1 2 3 23 23 H 1.08993 * 109.47435 * 209.99892 * 1 2 3 24 24 H 1.09005 * 109.47379 * 329.99761 * 1 2 3 25 25 H 1.08000 * 120.79130 * 0.02562 * 3 2 1 26 26 H 1.07989 * 120.41805 * 180.02562 * 4 3 2 27 27 H 1.09001 * 109.46953 * 214.99371 * 6 5 4 28 28 H 1.09000 * 109.47318 * 334.98969 * 6 5 4 29 29 H 1.00893 * 111.00654 * 56.04333 * 7 6 5 30 30 H 1.08993 * 109.46933 * 299.99334 * 8 7 6 31 31 H 1.09003 * 109.46864 * 60.00013 * 8 7 6 32 32 H 0.97003 * 120.00057 * 359.97438 * 11 9 8 33 33 H 0.97001 * 119.99953 * 180.02562 * 15 14 12 34 34 H 1.08001 * 119.62050 * 180.27435 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 -0.0005 5 6 4.2255 -0.0823 -0.0016 6 6 5.7312 -0.1468 -0.0028 7 7 6.2163 -0.2889 1.3764 8 6 7.6833 -0.3558 1.4142 9 6 8.1430 -0.5005 2.8421 10 8 7.3286 -0.5432 3.7400 11 7 9.4589 -0.5825 3.1214 12 6 9.8771 -0.7147 4.4204 13 1 9.1519 -0.7527 5.2199 14 6 11.2338 -0.7986 4.7084 15 7 12.1161 -0.7519 3.7356 16 14 11.8035 -0.9794 6.4782 17 1 10.6224 -1.0073 7.3780 18 1 12.5683 -2.2438 6.6253 19 1 12.6725 0.1696 6.8382 20 7 3.5254 -1.1995 -0.0070 21 6 2.2066 -1.1916 -0.0014 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 1.6889 2.1424 0.0004 26 1 4.1734 2.0592 -0.0001 27 1 6.0577 -1.0031 -0.5928 28 1 6.1338 0.7683 -0.4371 29 1 5.8063 -1.0956 1.8227 30 1 8.0229 -1.2138 0.8342 31 1 8.0997 0.5577 0.9897 32 1 10.1102 -0.5487 2.4033 33 1 13.0632 -0.8108 3.9366 34 1 1.6672 -2.1272 -0.0017 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401035580.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:53 Heat of formation + Delta-G solvation = -32.469948 kcal Electronic energy + Delta-G solvation = -16850.597334 eV Core-core repulsion = 13974.938979 eV Total energy + Delta-G solvation = -2875.658355 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.22332 -40.13796 -37.00285 -35.89288 -34.35832 -33.29161 -32.90476 -30.04297 -27.86660 -26.24784 -24.88512 -24.04460 -22.25212 -21.13450 -19.93693 -18.17845 -17.64425 -17.10074 -16.68305 -16.38495 -16.11476 -15.90919 -15.52228 -15.18732 -14.72256 -14.51178 -14.04123 -13.70520 -13.52208 -13.40213 -13.30710 -13.07772 -12.94716 -12.76786 -12.42049 -12.32430 -12.11605 -11.52712 -10.68832 -10.45686 -10.31914 -10.02855 -9.76971 -9.36643 -8.47639 -5.96536 0.13949 0.38572 1.36349 1.41568 1.56134 2.03469 2.28573 2.66039 3.09903 3.19390 3.38325 3.60714 3.79531 3.96516 4.08680 4.12349 4.29242 4.38555 4.48970 4.55020 4.60193 4.71403 4.78913 4.85286 4.93809 5.21620 5.24556 5.38358 5.40296 5.78965 5.86405 6.06014 6.23222 6.59104 7.06709 7.11582 7.54601 8.10287 8.70073 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.055043 B = 0.003392 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.568099 B = 8253.286651 C = 8459.800103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.140 4.140 3 C -0.084 4.084 4 C -0.153 4.153 5 C 0.103 3.897 6 C 0.112 3.888 7 N -0.675 5.675 8 C 0.065 3.935 9 C 0.437 3.563 10 O -0.626 6.626 11 N -0.571 5.571 12 C -0.335 4.335 13 H 0.077 0.923 14 C -0.013 4.013 15 N -0.920 5.920 16 Si 0.994 3.006 17 H -0.274 1.274 18 H -0.270 1.270 19 H -0.269 1.269 20 N -0.509 5.509 21 C 0.079 3.921 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.162 0.838 26 H 0.150 0.850 27 H 0.048 0.952 28 H 0.108 0.892 29 H 0.340 0.660 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.398 0.602 33 H 0.278 0.722 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.434 3.290 -12.148 21.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.143 4.143 3 C -0.109 4.109 4 C -0.174 4.174 5 C -0.034 4.034 6 C -0.017 4.017 7 N -0.307 5.307 8 C -0.068 4.068 9 C 0.225 3.775 10 O -0.513 6.513 11 N -0.209 5.209 12 C -0.464 4.464 13 H 0.095 0.905 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.817 3.183 17 H -0.199 1.199 18 H -0.195 1.195 19 H -0.194 1.194 20 N -0.218 5.218 21 C -0.078 4.078 22 H 0.104 0.896 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.179 0.821 26 H 0.167 0.833 27 H 0.066 0.934 28 H 0.126 0.874 29 H 0.158 0.842 30 H 0.086 0.914 31 H 0.132 0.868 32 H 0.232 0.768 33 H 0.088 0.912 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.313 3.131 -11.443 20.987 hybrid contribution 0.644 -0.317 0.228 0.753 sum -16.668 2.814 -11.215 20.286 Atomic orbital electron populations 1.20771 0.87782 1.04117 1.03589 1.21311 0.99322 0.93701 0.99920 1.21887 0.93620 0.99515 0.95928 1.22196 0.96027 0.98997 1.00149 1.21184 0.96167 0.89265 0.96823 1.20869 0.88727 1.02938 0.89119 1.60163 1.05325 1.48572 1.16687 1.21578 0.89121 1.03552 0.92500 1.20855 0.82455 0.82274 0.91933 1.90496 1.54037 1.56953 1.49779 1.41915 1.05945 1.64387 1.08625 1.19701 0.92145 1.49344 0.85225 0.90478 1.26053 0.95061 0.96277 1.03846 1.69675 1.02617 1.50147 1.33621 0.84860 0.78033 0.78392 0.76972 1.19893 1.19501 1.19440 1.67401 1.09713 1.32066 1.12666 1.23039 0.89215 0.99102 0.96459 0.89580 0.90398 0.90238 0.82055 0.83251 0.93357 0.87390 0.84165 0.91413 0.86826 0.76831 0.91227 0.81249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.04 71.24 0.72 -0.39 16 2 C -0.14 -2.55 5.90 -19.77 -0.12 -2.66 16 3 C -0.08 -1.54 9.86 22.47 0.22 -1.32 16 4 C -0.15 -3.45 9.72 22.36 0.22 -3.23 16 5 C 0.10 2.80 6.29 42.56 0.27 3.07 16 6 C 0.11 3.02 5.99 85.56 0.51 3.53 16 7 N -0.68 -23.61 6.11 -521.98 -3.19 -26.81 16 8 C 0.06 2.32 6.17 85.56 0.53 2.84 16 9 C 0.44 21.65 7.82 87.66 0.69 22.34 16 10 O -0.63 -36.40 15.78 -3.09 -0.05 -36.45 16 11 N -0.57 -30.08 5.29 -306.98 -1.62 -31.70 16 12 C -0.33 -19.45 9.68 84.04 0.81 -18.64 16 13 H 0.08 4.81 7.16 -2.91 -0.02 4.78 16 14 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 15 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 16 Si 0.99 43.57 29.55 68.60 2.03 45.60 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 20 N -0.51 -14.54 10.27 -183.88 -1.89 -16.43 16 21 C 0.08 1.78 10.86 84.67 0.92 2.70 16 22 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 23 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 24 H 0.08 0.68 8.10 -2.38 -0.02 0.66 16 25 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 26 H 0.15 2.81 8.06 -2.92 -0.02 2.79 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.11 2.37 8.04 -2.39 -0.02 2.35 16 29 H 0.34 13.37 8.42 -89.70 -0.76 12.62 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 32 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 33 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 34 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -72.16 301.97 0.42 -71.73 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.36 Total: 35.91 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 5.23 Total: 8.02 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -6.42 Total: -124.82 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.05 Total: -36.45 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -72.16 0.42 -71.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401035580.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.265 kcal (2) G-P(sol) polarization free energy of solvation -72.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds