Wall clock time and date at job start Mon Mar 30 2020 04:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47386 * 2 1 4 4 N 1.31792 * 119.03860 * 90.00007 * 3 2 1 5 5 C 1.32270 * 120.88888 * 180.02562 * 4 3 2 6 6 C 1.39234 * 119.01651 * 359.97438 * 5 4 3 7 7 N 1.39980 * 120.87021 * 180.02562 * 6 5 4 8 8 C 1.34774 * 119.99679 * 34.90794 * 7 6 5 9 9 O 1.21284 * 120.00335 * 355.32106 * 8 7 6 10 10 C 1.50702 * 119.99835 * 175.31471 * 8 7 6 11 11 H 1.09006 * 109.46814 * 60.00556 * 10 8 7 12 12 C 1.52999 * 109.47578 * 300.00617 * 10 8 7 13 13 C 1.50699 * 109.47053 * 180.02562 * 10 8 7 14 14 H 1.08000 * 120.00362 * 0.02562 * 13 10 8 15 15 C 1.37883 * 119.99812 * 180.02562 * 13 10 8 16 16 N 1.31512 * 120.00152 * 179.97438 * 15 13 10 17 17 Si 1.86797 * 120.00118 * 0.02562 * 15 13 10 18 18 H 1.48504 * 109.47016 * 270.00060 * 17 15 13 19 19 H 1.48498 * 109.47193 * 29.99656 * 17 15 13 20 20 H 1.48493 * 109.47398 * 149.99826 * 17 15 13 21 21 C 1.39233 * 118.26000 * 0.27730 * 6 5 4 22 22 N 1.31800 * 119.03255 * 269.97909 * 3 2 1 23 23 H 1.09002 * 109.47249 * 60.00143 * 1 2 3 24 24 H 1.08994 * 109.47119 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47138 * 300.00379 * 1 2 3 26 26 H 1.09004 * 109.47138 * 239.99621 * 2 1 3 27 27 H 1.09002 * 109.47249 * 119.99857 * 2 1 3 28 28 H 1.08001 * 120.48764 * 180.02562 * 5 4 3 29 29 H 0.96996 * 120.00050 * 214.91371 * 7 6 5 30 30 H 1.08998 * 109.46692 * 299.99825 * 12 10 8 31 31 H 1.09000 * 109.47148 * 59.99497 * 12 10 8 32 32 H 1.08994 * 109.47176 * 179.97438 * 12 10 8 33 33 H 0.96999 * 120.00653 * 179.97438 * 16 15 13 34 34 H 1.07999 * 120.49048 * 179.70392 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2457 2.0239 1.1523 5 6 2.6859 3.2705 1.1950 6 6 2.9241 3.9439 -0.0002 7 7 3.3907 5.2636 -0.0003 8 6 4.2451 5.6763 0.9569 9 8 4.5435 4.9308 1.8659 10 6 4.8299 7.0639 0.8976 11 1 4.0254 7.7988 0.9282 12 6 5.6220 7.2287 -0.4010 13 6 5.7471 7.2732 2.0749 14 1 5.8924 6.4806 2.7940 15 6 6.4007 8.4768 2.2342 16 7 7.2007 8.6597 3.2618 17 14 6.1489 9.8481 0.9910 18 1 7.1584 9.7265 -0.0914 19 1 4.7860 9.7457 0.4103 20 1 6.3022 11.1621 1.6655 21 6 2.6808 3.2721 -1.1952 22 7 2.2460 2.0237 -1.1524 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.8589 3.7583 2.1428 29 1 3.0991 5.8811 -0.6891 30 1 6.4264 6.4938 -0.4315 31 1 4.9589 7.0771 -1.2527 32 1 6.0445 8.2324 -0.4440 33 1 7.6609 9.5062 3.3737 34 1 2.8486 3.7618 -2.1431 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597419800.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:47 Heat of formation + Delta-G solvation = -15.282703 kcal Electronic energy + Delta-G solvation = -17642.569355 eV Core-core repulsion = 14767.656295 eV Total energy + Delta-G solvation = -2874.913060 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.41990 -40.76033 -36.64542 -35.91196 -34.77461 -34.48938 -33.30859 -30.41052 -27.13831 -26.26443 -25.81471 -24.50360 -22.79343 -21.45405 -19.19867 -18.96435 -18.32193 -17.72329 -17.31983 -16.74848 -16.15416 -15.87151 -15.19466 -15.02371 -14.85513 -14.59299 -14.49545 -14.07576 -13.55533 -13.46492 -12.88508 -12.86140 -12.56109 -12.27231 -12.11267 -12.01932 -11.98025 -11.85151 -11.46547 -11.24733 -10.83167 -10.69659 -10.25964 -9.48172 -8.27566 -6.37034 -0.24273 -0.01794 1.35279 1.41920 1.53176 1.62001 1.94527 2.34872 2.67634 2.98511 3.06352 3.13595 3.44614 3.77624 3.99612 4.15380 4.30718 4.39049 4.40108 4.57724 4.64537 4.72192 4.78608 4.99564 5.02317 5.05474 5.13931 5.32239 5.43287 5.48592 5.49369 5.90520 6.18173 6.46085 6.78454 7.02062 7.15885 7.29873 8.89957 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.055452 B = 0.004657 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.816064 B = 6010.487769 C = 6342.769689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 C 0.280 3.720 4 N -0.520 5.520 5 C 0.124 3.876 6 C 0.041 3.959 7 N -0.650 5.650 8 C 0.530 3.470 9 O -0.558 6.558 10 C -0.002 4.002 11 H 0.082 0.918 12 C -0.143 4.143 13 C -0.526 4.526 14 H 0.030 0.970 15 C 0.006 3.994 16 N -0.953 5.953 17 Si 0.960 3.040 18 H -0.261 1.261 19 H -0.223 1.223 20 H -0.303 1.303 21 C 0.139 3.861 22 N -0.505 5.505 23 H 0.055 0.945 24 H 0.090 0.910 25 H 0.045 0.955 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.156 0.844 29 H 0.434 0.566 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.267 0.733 34 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.594 -9.262 -15.091 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.091 4.091 3 C 0.012 3.988 4 N -0.234 5.234 5 C -0.043 4.043 6 C -0.059 4.059 7 N -0.299 5.299 8 C 0.320 3.680 9 O -0.433 6.433 10 C -0.024 4.024 11 H 0.099 0.901 12 C -0.200 4.200 13 C -0.564 4.564 14 H 0.048 0.952 15 C -0.190 4.190 16 N -0.593 5.593 17 Si 0.784 3.216 18 H -0.187 1.187 19 H -0.146 1.146 20 H -0.231 1.231 21 C -0.031 4.031 22 N -0.218 5.218 23 H 0.074 0.926 24 H 0.108 0.892 25 H 0.064 0.936 26 H 0.122 0.878 27 H 0.109 0.891 28 H 0.173 0.827 29 H 0.274 0.726 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -13.553 -10.567 -14.334 22.378 hybrid contribution 0.859 1.949 0.332 2.156 sum -12.695 -8.617 -14.002 20.772 Atomic orbital electron populations 1.21652 0.92514 1.03648 1.01612 1.20447 0.97561 0.86233 1.04859 1.23825 0.92907 0.98824 0.83224 1.68289 1.13882 1.09796 1.31467 1.23411 0.91357 0.90533 0.99039 1.19721 1.00891 0.88620 0.96636 1.43387 1.45417 1.09382 1.31732 1.21484 0.76320 0.90297 0.79877 1.90602 1.60437 1.56893 1.35397 1.19279 0.97000 0.89864 0.96245 0.90068 1.22068 1.00702 1.01215 0.96056 1.21084 1.26453 1.00150 1.08749 0.95150 1.26056 0.93907 1.01252 0.97812 1.70076 1.30854 1.26292 1.32032 0.85711 0.81521 0.76229 0.78113 1.18662 1.14569 1.23143 1.23724 0.92364 0.89182 0.97853 1.68294 1.13773 1.09693 1.30032 0.92556 0.89158 0.93613 0.87842 0.89133 0.82662 0.72558 0.93585 0.88774 0.93376 0.92384 0.76958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.89 71.98 0.71 -1.45 16 2 C -0.05 -1.01 6.37 29.85 0.19 -0.82 16 3 C 0.28 7.59 6.89 138.75 0.96 8.55 16 4 N -0.52 -16.94 10.32 -187.38 -1.93 -18.88 16 5 C 0.12 4.28 9.98 84.87 0.85 5.13 16 6 C 0.04 1.18 6.34 38.32 0.24 1.42 16 7 N -0.65 -17.74 5.22 -302.92 -1.58 -19.32 16 8 C 0.53 21.00 7.01 87.66 0.61 21.62 16 9 O -0.56 -27.82 12.96 -3.04 -0.04 -27.86 16 10 C 0.00 -0.09 2.23 -12.29 -0.03 -0.12 16 11 H 0.08 3.03 7.20 -2.38 -0.02 3.01 16 12 C -0.14 -4.84 8.57 71.98 0.62 -4.23 16 13 C -0.53 -29.99 8.95 25.60 0.23 -29.77 16 14 H 0.03 2.07 7.00 -2.91 -0.02 2.05 16 15 C 0.01 0.36 5.45 84.66 0.46 0.82 16 16 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 17 Si 0.96 40.77 24.38 68.60 1.67 42.44 16 18 H -0.26 -10.37 6.87 99.48 0.68 -9.68 16 19 H -0.22 -7.86 6.53 99.48 0.65 -7.21 16 20 H -0.30 -13.27 7.11 99.48 0.71 -12.57 16 21 C 0.14 3.11 11.26 84.87 0.96 4.06 16 22 N -0.50 -12.73 10.32 -187.39 -1.93 -14.66 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.16 6.15 6.33 -2.91 -0.02 6.13 16 29 H 0.43 7.64 8.39 -92.71 -0.78 6.86 16 30 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 2.08 7.68 -2.39 -0.02 2.06 16 32 H 0.05 1.69 3.27 -2.39 -0.01 1.68 16 33 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 34 H 0.21 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -77.69 285.71 2.55 -75.14 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.27 Total: 17.54 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 5.80 Total: 5.22 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -5.15 Total: -112.47 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.04 Total: -27.86 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.67 Total: 42.44 kcal Total: -77.69 2.55 -75.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597419800.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.857 kcal (2) G-P(sol) polarization free energy of solvation -77.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds