Wall clock time and date at job start Mon Mar 30 2020 04:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35310 * 126.12527 * 2 1 4 4 C 1.39880 * 107.92154 * 179.97438 * 3 2 1 5 5 C 1.50695 * 125.90079 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47209 * 124.99995 * 5 4 3 7 7 O 1.21284 * 120.00131 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00152 * 179.97438 * 6 5 4 9 9 C 1.47064 * 136.05536 * 359.63399 * 8 6 5 10 10 C 1.53760 * 87.88512 * 152.96321 * 9 8 6 11 11 C 1.50704 * 114.26472 * 139.79505 * 10 9 8 12 12 H 1.08003 * 119.99610 * 266.46832 * 11 10 9 13 13 C 1.37878 * 120.00400 * 86.47576 * 11 10 9 14 14 N 1.31519 * 119.99563 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99771 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47325 * 60.00182 * 15 13 11 17 17 H 1.48506 * 109.46729 * 179.97438 * 15 13 11 18 18 H 1.48490 * 109.47474 * 299.99338 * 15 13 11 19 19 C 1.47062 * 136.05878 * 180.02562 * 8 6 5 20 20 N 1.30836 * 108.19611 * 0.02562 * 4 3 2 21 21 N 1.34946 * 126.12821 * 179.68712 * 2 1 3 22 22 H 0.96999 * 126.03519 * 0.04296 * 21 2 1 23 23 H 1.09002 * 109.47152 * 89.99893 * 1 2 3 24 24 H 1.09001 * 109.46980 * 329.99994 * 1 2 3 25 25 H 1.09004 * 109.47113 * 209.99974 * 1 2 3 26 26 H 1.08008 * 126.04503 * 359.94420 * 3 2 1 27 27 H 1.08998 * 109.47156 * 245.00290 * 5 4 3 28 28 H 1.09000 * 109.47044 * 5.00488 * 5 4 3 29 29 H 1.09003 * 113.46959 * 267.69101 * 9 8 6 30 30 H 1.08997 * 113.46933 * 38.13525 * 9 8 6 31 31 H 1.08998 * 114.39386 * 272.67392 * 10 9 8 32 32 H 0.96996 * 119.99376 * 180.02562 * 14 13 11 33 33 H 1.09003 * 113.46721 * 321.87163 * 19 8 6 34 34 H 1.09000 * 113.47229 * 92.24389 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6560 0.0006 5 6 4.8543 1.5395 0.0003 6 6 5.7388 1.1747 1.1645 7 8 5.4104 0.2844 1.9200 8 7 6.8952 1.8369 1.3658 9 6 7.6209 2.9277 0.6977 10 6 8.2483 3.2680 2.0596 11 6 9.7072 3.6400 1.9937 12 1 10.4644 2.8845 2.1434 13 6 10.0754 4.9448 1.7425 14 7 9.1533 5.8646 1.5598 15 14 11.8837 5.4059 1.6616 16 1 12.5440 4.6322 0.5796 17 1 12.0120 6.8583 1.3800 18 1 12.5327 5.0938 2.9602 19 6 7.9901 1.7821 2.3461 20 7 3.6334 -0.6524 0.0004 21 7 2.3027 -1.0899 0.0060 22 1 2.0056 -2.0133 0.0104 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5138 26 1 1.9740 2.1211 -0.0009 27 1 5.4034 1.4001 -0.9309 28 1 4.5484 2.5819 0.0891 29 1 8.3451 2.5800 -0.0391 30 1 6.9682 3.7104 0.3111 31 1 7.6568 3.9504 2.6698 32 1 9.4123 6.7824 1.3827 33 1 7.6520 1.5886 3.3641 34 1 8.8111 1.1318 2.0441 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598033326.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:38 Heat of formation + Delta-G solvation = 45.083371 kcal Electronic energy + Delta-G solvation = -17324.964751 eV Core-core repulsion = 14452.669360 eV Total energy + Delta-G solvation = -2872.295391 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.23869 -40.96247 -38.71916 -34.62103 -34.31692 -32.55653 -31.28306 -29.31042 -27.81655 -26.80282 -26.56386 -22.62042 -21.54693 -20.95030 -19.52366 -18.72251 -18.33363 -17.72000 -16.77646 -16.47243 -16.30891 -15.71555 -15.25318 -14.67596 -14.51218 -14.20967 -13.88082 -13.82144 -13.49116 -13.29872 -13.19542 -13.00744 -12.80890 -12.70581 -12.57549 -12.14832 -11.53022 -11.38201 -11.01962 -10.74558 -10.49777 -10.24504 -9.52817 -9.51324 -8.13536 -6.24335 0.93520 1.51191 1.51724 1.59095 1.65462 1.68005 1.97986 2.20363 2.49512 3.16591 3.54678 3.65167 3.91426 4.17685 4.30341 4.40582 4.45812 4.46735 4.59452 4.71251 4.73839 4.78761 4.84333 4.90364 5.01873 5.09615 5.13294 5.26590 5.62966 5.65989 5.84940 6.27080 6.48596 6.75549 6.83450 6.95775 7.21668 7.45323 8.96216 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.059453 B = 0.003897 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.847344 B = 7183.226427 C = 7433.789775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.091 3.909 3 C -0.288 4.288 4 C 0.075 3.925 5 C -0.048 4.048 6 C 0.530 3.470 7 O -0.588 6.588 8 N -0.647 5.647 9 C 0.113 3.887 10 C 0.024 3.976 11 C -0.531 4.531 12 H 0.064 0.936 13 C 0.023 3.977 14 N -0.916 5.916 15 Si 0.957 3.043 16 H -0.268 1.268 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.103 3.897 20 N -0.317 5.317 21 N -0.474 5.474 22 H 0.447 0.553 23 H 0.099 0.901 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.167 0.833 27 H 0.122 0.878 28 H 0.134 0.866 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.265 0.735 33 H 0.051 0.949 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.009 -6.951 -6.527 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.038 4.038 3 C -0.317 4.317 4 C -0.092 4.092 5 C -0.089 4.089 6 C 0.321 3.679 7 O -0.470 6.470 8 N -0.380 5.380 9 C -0.009 4.009 10 C 0.005 3.995 11 C -0.569 4.569 12 H 0.082 0.918 13 C -0.177 4.177 14 N -0.554 5.554 15 Si 0.783 3.217 16 H -0.193 1.193 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.019 4.019 20 N -0.140 5.140 21 N -0.185 5.185 22 H 0.292 0.708 23 H 0.117 0.883 24 H 0.116 0.884 25 H 0.104 0.896 26 H 0.185 0.815 27 H 0.140 0.860 28 H 0.152 0.848 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.698 -8.373 -6.216 18.022 hybrid contribution 0.516 0.532 0.150 0.756 sum -14.182 -7.841 -6.066 17.304 Atomic orbital electron populations 1.20608 0.83670 1.05297 1.04900 1.21787 0.96496 0.86702 0.98802 1.21470 0.90548 1.00917 1.18744 1.21814 0.95741 0.91556 1.00086 1.19989 0.91115 1.00332 0.97429 1.20579 0.80738 0.80064 0.86517 1.90646 1.74127 1.32696 1.49514 1.50009 1.18578 1.37333 1.32130 1.23431 0.92636 0.85871 0.99004 1.20266 0.96045 0.90096 0.93109 1.21181 0.91569 0.94485 1.49649 0.91770 1.25727 1.01483 0.96313 0.94191 1.70042 1.34636 1.02406 1.48316 0.85622 0.80317 0.76962 0.78815 1.19289 1.21157 1.19893 1.23215 0.87047 0.99563 0.92084 1.77314 0.97913 1.13484 1.25301 1.46360 1.03361 1.09243 1.59502 0.70756 0.88250 0.88396 0.89552 0.81526 0.85978 0.84820 0.90052 0.91184 0.94068 0.92589 0.93051 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 10.43 71.24 0.74 -0.13 16 2 C 0.09 1.93 7.21 41.40 0.30 2.22 16 3 C -0.29 -7.37 10.64 21.99 0.23 -7.13 16 4 C 0.07 2.42 6.01 43.10 0.26 2.68 16 5 C -0.05 -1.49 6.11 29.10 0.18 -1.31 16 6 C 0.53 21.80 8.07 87.66 0.71 22.51 16 7 O -0.59 -28.67 16.34 -3.04 -0.05 -28.71 16 8 N -0.65 -26.87 3.69 -857.84 -3.16 -30.04 16 9 C 0.11 4.65 8.00 83.26 0.67 5.32 16 10 C 0.02 1.15 3.79 -11.11 -0.04 1.10 16 11 C -0.53 -27.04 8.83 25.60 0.23 -26.81 16 12 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 13 C 0.02 1.20 5.46 84.65 0.46 1.67 16 14 N -0.92 -49.61 13.26 21.45 0.28 -49.33 16 15 Si 0.96 40.71 29.54 68.60 2.03 42.74 16 16 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 19 C 0.10 4.49 8.17 83.18 0.68 5.17 16 20 N -0.32 -11.02 12.05 -47.38 -0.57 -11.59 16 21 N -0.47 -11.78 7.36 -48.00 -0.35 -12.13 16 22 H 0.45 7.88 8.96 -213.33 -1.91 5.96 16 23 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 27 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 28 H 0.13 3.49 8.12 -2.39 -0.02 3.47 16 29 H 0.08 3.25 8.10 -2.39 -0.02 3.23 16 30 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.04 2.17 8.11 -2.39 -0.02 2.15 16 32 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 33 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.08 3.32 8.10 -2.39 -0.02 3.30 16 Total: -1.00 -70.11 300.69 1.78 -68.33 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -0.80 Total: 15.45 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 4.41 Total: 5.29 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -3.80 Total: -103.08 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.05 Total: -28.71 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -70.11 1.78 -68.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598033326.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.412 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds