Wall clock time and date at job start Mon Mar 30 2020 04:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39866 * 126.04103 * 2 1 4 4 N 1.30844 * 108.20609 * 180.02562 * 3 2 1 5 5 N 1.40083 * 108.20198 * 359.97438 * 4 3 2 6 6 C 1.46504 * 126.03812 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46990 * 305.02871 * 6 5 4 8 8 O 1.21280 * 119.99895 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99947 * 180.02562 * 7 6 5 10 10 C 1.47063 * 136.05698 * 359.61935 * 9 7 6 11 11 C 1.53756 * 87.88862 * 152.96975 * 10 9 7 12 12 C 1.50698 * 114.26994 * 139.79643 * 11 10 9 13 13 H 1.08000 * 119.99814 * 266.47905 * 12 11 10 14 14 C 1.37873 * 120.00406 * 86.47012 * 12 11 10 15 15 N 1.31516 * 119.99959 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99873 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47502 * 89.99609 * 16 14 12 18 18 H 1.48504 * 109.47133 * 209.99564 * 16 14 12 19 19 H 1.48499 * 109.46949 * 329.99448 * 16 14 12 20 20 C 1.47064 * 136.05730 * 179.97438 * 9 7 6 21 21 C 1.34951 * 107.92726 * 359.97438 * 5 4 3 22 22 H 1.08996 * 109.47372 * 89.97825 * 1 2 3 23 23 H 1.08998 * 109.46828 * 209.97495 * 1 2 3 24 24 H 1.08998 * 109.47244 * 329.97233 * 1 2 3 25 25 H 1.08004 * 125.89969 * 0.05889 * 3 2 1 26 26 H 1.09001 * 109.46936 * 65.02250 * 6 5 4 27 27 H 1.08995 * 109.47043 * 185.02459 * 6 5 4 28 28 H 1.08996 * 113.47271 * 267.70007 * 10 9 7 29 29 H 1.09004 * 113.46604 * 38.14311 * 10 9 7 30 30 H 1.09003 * 114.39428 * 272.67644 * 11 10 9 31 31 H 0.97006 * 119.99743 * 179.97438 * 15 14 12 32 32 H 1.08993 * 113.47024 * 321.86323 * 20 9 7 33 33 H 1.09000 * 113.46903 * 92.24623 * 20 9 7 34 34 H 1.08004 * 126.12633 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1309 0.0000 4 7 3.5755 0.7302 -0.0006 5 7 3.5844 -0.6706 -0.0003 6 6 4.7746 -1.5249 -0.0013 7 6 5.6571 -1.1555 -1.1657 8 8 5.3244 -0.2665 -1.9206 9 7 6.8156 -1.8137 -1.3686 10 6 7.5453 -2.9030 -0.7025 11 6 8.1729 -3.2394 -2.0652 12 6 9.6331 -3.6067 -2.0009 13 1 10.3876 -2.8486 -2.1500 14 6 10.0057 -4.9105 -1.7516 15 7 11.2800 -5.2310 -1.6960 16 14 8.7005 -6.2219 -1.4941 17 1 8.3491 -6.8339 -2.8007 18 1 9.2249 -7.2697 -0.5818 19 1 7.4900 -5.6046 -0.8950 20 6 7.9092 -1.7545 -2.3501 21 6 2.3031 -1.0942 0.0009 22 1 -0.3634 0.0004 -1.0276 23 1 -0.3633 -0.8902 0.5134 24 1 -0.3633 0.8897 0.5142 25 1 1.9951 2.1578 0.0009 26 1 5.3237 -1.3841 0.9297 27 1 4.4727 -2.5684 -0.0909 28 1 8.2688 -2.5539 0.0342 29 1 6.8954 -3.6883 -0.3165 30 1 7.5833 -3.9230 -2.6760 31 1 11.5421 -6.1483 -1.5202 32 1 7.5693 -1.5616 -3.3676 33 1 8.7282 -1.1017 -2.0485 34 1 1.9724 -2.1224 0.0018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598035332.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:23 Heat of formation + Delta-G solvation = 85.074199 kcal Electronic energy + Delta-G solvation = -17495.914331 eV Core-core repulsion = 14625.353073 eV Total energy + Delta-G solvation = -2870.561258 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.21591 -39.65118 -37.36646 -33.62884 -32.73161 -31.62875 -30.11378 -28.25716 -26.00031 -25.22263 -24.73886 -21.45896 -20.43445 -20.07248 -18.41099 -17.33102 -17.00471 -16.64873 -15.53045 -15.20237 -14.79811 -14.20458 -14.00778 -13.76990 -13.34747 -13.12512 -13.01690 -12.79182 -12.42050 -12.20767 -11.97154 -11.92268 -11.64628 -10.94332 -10.79525 -10.47256 -10.18517 -10.00860 -9.63420 -9.38381 -9.13434 -8.74231 -8.31093 -8.17401 -6.27998 -4.31390 1.88953 2.40184 2.83580 2.84680 3.13788 3.20883 3.23896 3.33410 4.23062 4.45442 4.68371 4.76561 4.95042 5.00391 5.06546 5.21360 5.38847 5.61068 5.62513 5.78266 5.84181 5.90777 5.98916 6.10486 6.12717 6.19598 6.30784 6.41310 6.68299 6.97698 7.04558 7.46159 7.76297 8.17939 8.29539 8.45380 8.75974 9.32324 10.83985 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.044746 B = 0.004511 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.607394 B = 6205.224574 C = 6618.009430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.244 4.244 3 C 0.039 3.961 4 N -0.263 5.263 5 N -0.358 5.358 6 C 0.121 3.879 7 C 0.520 3.480 8 O -0.531 6.531 9 N -0.646 5.646 10 C 0.081 3.919 11 C -0.005 4.005 12 C -0.515 4.515 13 H 0.080 0.920 14 C 0.077 3.923 15 N -0.890 5.890 16 Si 0.877 3.123 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.262 1.262 20 C 0.117 3.883 21 C 0.051 3.949 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.180 0.820 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.267 0.733 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.273 4.102 5.724 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.256 4.256 3 C -0.148 4.148 4 N -0.083 5.083 5 N -0.140 5.140 6 C -0.004 4.004 7 C 0.307 3.693 8 O -0.407 6.407 9 N -0.382 5.382 10 C -0.042 4.042 11 C -0.024 4.024 12 C -0.552 4.552 13 H 0.098 0.902 14 C -0.127 4.127 15 N -0.527 5.527 16 Si 0.704 3.296 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.186 1.186 20 C -0.004 4.004 21 C -0.095 4.095 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.197 0.803 26 H 0.130 0.870 27 H 0.139 0.861 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -16.146 4.799 5.388 17.685 hybrid contribution -1.303 -1.148 0.251 1.755 sum -17.449 3.651 5.639 18.698 Atomic orbital electron populations 1.20012 0.89434 1.01852 1.01386 1.20089 0.96922 0.91917 1.16684 1.23806 0.90102 0.99704 1.01211 1.77499 1.20869 0.88348 1.21589 1.48010 1.04489 1.04828 1.56680 1.21418 0.85172 0.93947 0.99868 1.19895 0.81527 0.81747 0.86166 1.90741 1.72911 1.30164 1.46907 1.49955 1.18309 1.37216 1.32672 1.24076 0.93000 0.86429 1.00693 1.20782 0.97823 0.92139 0.91690 1.20761 0.88880 0.95530 1.50062 0.90152 1.25022 0.95209 0.98445 0.94023 1.69893 1.15427 1.19421 1.47916 0.86870 0.82291 0.81720 0.78693 1.20114 1.21186 1.18639 1.23120 0.86012 0.99344 0.91955 1.22299 0.83880 1.00054 1.03223 0.92281 0.92356 0.92026 0.80306 0.87000 0.86105 0.89383 0.92220 0.92098 0.92273 0.91968 0.90002 0.81164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.37 36.00 0.37 -0.20 16 2 C -0.24 -2.94 6.10 -105.05 -0.64 -3.58 16 3 C 0.04 0.53 11.96 -17.36 -0.21 0.33 16 4 N -0.26 -4.49 11.64 30.63 0.36 -4.13 16 5 N -0.36 -5.41 3.40 -62.54 -0.21 -5.62 16 6 C 0.12 1.68 6.82 -5.19 -0.04 1.64 16 7 C 0.52 9.58 8.11 -10.99 -0.09 9.49 16 8 O -0.53 -11.90 16.48 5.56 0.09 -11.81 16 9 N -0.65 -11.94 3.69 -185.09 -0.68 -12.62 16 10 C 0.08 1.45 7.44 -8.38 -0.06 1.39 16 11 C 0.00 -0.10 2.96 -91.13 -0.27 -0.37 16 12 C -0.51 -12.92 9.38 -34.44 -0.32 -13.24 16 13 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 14 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.89 -25.10 13.96 55.43 0.77 -24.33 16 16 Si 0.88 19.12 27.15 -169.99 -4.62 14.51 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 18 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.26 -5.18 5.72 56.52 0.32 -4.86 16 20 C 0.12 2.29 8.17 -8.52 -0.07 2.22 16 21 C 0.05 0.62 11.36 -17.22 -0.20 0.43 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.18 1.86 8.06 -52.48 -0.42 1.44 16 26 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.12 1.27 8.07 -51.93 -0.42 0.85 16 28 H 0.09 1.57 8.10 -51.93 -0.42 1.15 16 29 H 0.06 0.97 7.15 -51.93 -0.37 0.60 16 30 H 0.06 1.27 7.03 -51.93 -0.37 0.91 16 31 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.59 8.10 -51.93 -0.42 1.16 16 34 H 0.17 1.46 8.06 -52.48 -0.42 1.03 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -32.48 296.04 -6.04 -38.52 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.59 Total: 1.03 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.62 Total: 0.00 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.23 Total: -46.70 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.62 Total: 14.51 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.48 -6.04 -38.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598035332.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.595 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds