Wall clock time and date at job start Mon Mar 30 2020 04:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39866 * 126.04103 * 2 1 4 4 N 1.30844 * 108.20609 * 180.02562 * 3 2 1 5 5 N 1.40083 * 108.20198 * 359.97438 * 4 3 2 6 6 C 1.46504 * 126.03812 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46990 * 305.02871 * 6 5 4 8 8 O 1.21280 * 119.99895 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99947 * 180.02562 * 7 6 5 10 10 C 1.47063 * 136.05698 * 359.61935 * 9 7 6 11 11 C 1.53756 * 87.88862 * 152.96975 * 10 9 7 12 12 C 1.50698 * 114.26994 * 139.79643 * 11 10 9 13 13 H 1.08000 * 119.99814 * 266.47905 * 12 11 10 14 14 C 1.37873 * 120.00406 * 86.47012 * 12 11 10 15 15 N 1.31516 * 119.99959 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99873 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47502 * 89.99609 * 16 14 12 18 18 H 1.48504 * 109.47133 * 209.99564 * 16 14 12 19 19 H 1.48499 * 109.46949 * 329.99448 * 16 14 12 20 20 C 1.47064 * 136.05730 * 179.97438 * 9 7 6 21 21 C 1.34951 * 107.92726 * 359.97438 * 5 4 3 22 22 H 1.08996 * 109.47372 * 89.97825 * 1 2 3 23 23 H 1.08998 * 109.46828 * 209.97495 * 1 2 3 24 24 H 1.08998 * 109.47244 * 329.97233 * 1 2 3 25 25 H 1.08004 * 125.89969 * 0.05889 * 3 2 1 26 26 H 1.09001 * 109.46936 * 65.02250 * 6 5 4 27 27 H 1.08995 * 109.47043 * 185.02459 * 6 5 4 28 28 H 1.08996 * 113.47271 * 267.70007 * 10 9 7 29 29 H 1.09004 * 113.46604 * 38.14311 * 10 9 7 30 30 H 1.09003 * 114.39428 * 272.67644 * 11 10 9 31 31 H 0.97006 * 119.99743 * 179.97438 * 15 14 12 32 32 H 1.08993 * 113.47024 * 321.86323 * 20 9 7 33 33 H 1.09000 * 113.46903 * 92.24623 * 20 9 7 34 34 H 1.08004 * 126.12633 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1309 0.0000 4 7 3.5755 0.7302 -0.0006 5 7 3.5844 -0.6706 -0.0003 6 6 4.7746 -1.5249 -0.0013 7 6 5.6571 -1.1555 -1.1657 8 8 5.3244 -0.2665 -1.9206 9 7 6.8156 -1.8137 -1.3686 10 6 7.5453 -2.9030 -0.7025 11 6 8.1729 -3.2394 -2.0652 12 6 9.6331 -3.6067 -2.0009 13 1 10.3876 -2.8486 -2.1500 14 6 10.0057 -4.9105 -1.7516 15 7 11.2800 -5.2310 -1.6960 16 14 8.7005 -6.2219 -1.4941 17 1 8.3491 -6.8339 -2.8007 18 1 9.2249 -7.2697 -0.5818 19 1 7.4900 -5.6046 -0.8950 20 6 7.9092 -1.7545 -2.3501 21 6 2.3031 -1.0942 0.0009 22 1 -0.3634 0.0004 -1.0276 23 1 -0.3633 -0.8902 0.5134 24 1 -0.3633 0.8897 0.5142 25 1 1.9951 2.1578 0.0009 26 1 5.3237 -1.3841 0.9297 27 1 4.4727 -2.5684 -0.0909 28 1 8.2688 -2.5539 0.0342 29 1 6.8954 -3.6883 -0.3165 30 1 7.5833 -3.9230 -2.6760 31 1 11.5421 -6.1483 -1.5202 32 1 7.5693 -1.5616 -3.3676 33 1 8.7282 -1.1017 -2.0485 34 1 1.9724 -2.1224 0.0018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598035332.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:22 Heat of formation + Delta-G solvation = 62.767128 kcal Electronic energy + Delta-G solvation = -17496.881638 eV Core-core repulsion = 14625.353073 eV Total energy + Delta-G solvation = -2871.528566 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.20874 -41.12363 -38.89322 -34.72348 -34.60102 -32.54085 -31.63217 -29.43464 -27.28762 -26.77638 -25.99605 -22.68759 -21.64347 -21.24941 -19.83116 -19.15939 -18.24007 -17.87277 -16.87872 -16.56550 -16.26216 -15.57012 -15.25777 -15.03801 -14.74483 -14.24052 -14.03570 -13.92508 -13.60540 -13.48985 -13.40042 -13.04511 -12.67962 -12.62238 -12.50723 -11.80647 -11.68483 -11.41658 -11.23945 -11.03672 -10.66312 -10.33419 -9.70418 -9.23081 -8.26172 -6.35360 0.91096 1.40314 1.44428 1.47176 1.49129 1.57815 1.91902 1.98993 2.41325 3.05213 3.27518 3.67255 3.96658 3.99106 4.08087 4.16144 4.27326 4.42333 4.50507 4.56717 4.61206 4.72873 4.78672 4.87610 4.93397 5.03240 5.27026 5.33803 5.37154 5.60090 5.75954 6.10958 6.28634 6.70697 6.77712 6.78456 7.01879 7.32582 8.89473 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.044746 B = 0.004511 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.607394 B = 6205.224574 C = 6618.009430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.252 4.252 3 C 0.031 3.969 4 N -0.325 5.325 5 N -0.374 5.374 6 C 0.126 3.874 7 C 0.516 3.484 8 O -0.577 6.577 9 N -0.643 5.643 10 C 0.096 3.904 11 C -0.011 4.011 12 C -0.517 4.517 13 H 0.036 0.964 14 C 0.017 3.983 15 N -0.946 5.946 16 Si 0.944 3.056 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.219 1.219 20 C 0.113 3.887 21 C 0.050 3.950 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.199 0.801 26 H 0.130 0.870 27 H 0.164 0.836 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.268 0.732 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.779 2.658 7.070 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.264 4.264 3 C -0.155 4.155 4 N -0.146 5.146 5 N -0.157 5.157 6 C 0.002 3.998 7 C 0.305 3.695 8 O -0.457 6.457 9 N -0.378 5.378 10 C -0.026 4.026 11 C -0.031 4.031 12 C -0.555 4.555 13 H 0.054 0.946 14 C -0.181 4.181 15 N -0.585 5.585 16 Si 0.767 3.233 17 H -0.202 1.202 18 H -0.216 1.216 19 H -0.141 1.141 20 C -0.009 4.009 21 C -0.094 4.094 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.216 0.784 26 H 0.148 0.852 27 H 0.182 0.818 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -19.682 3.379 6.752 21.081 hybrid contribution -0.173 -0.571 -0.239 0.643 sum -19.855 2.808 6.513 21.084 Atomic orbital electron populations 1.20070 0.86961 1.03271 1.01987 1.20574 0.98641 0.91241 1.15921 1.24328 0.89812 1.01380 1.00014 1.77418 1.22815 0.90120 1.24203 1.48156 1.05607 1.04342 1.57552 1.21588 0.84545 0.95796 0.97875 1.20795 0.81286 0.80654 0.86722 1.90721 1.73847 1.32182 1.48957 1.49919 1.18222 1.37473 1.32175 1.23844 0.93225 0.86925 0.98580 1.20706 0.95291 0.92767 0.94323 1.20924 0.90564 0.94720 1.49285 0.94556 1.25960 0.97421 1.01065 0.93700 1.70060 1.18216 1.20038 1.50210 0.85800 0.80622 0.78231 0.78624 1.20234 1.21610 1.14108 1.23006 0.86753 0.98637 0.92546 1.23033 0.82786 1.01962 1.01646 0.91973 0.90597 0.91038 0.78444 0.85189 0.81837 0.89392 0.88645 0.91149 0.92333 0.92176 0.90804 0.77276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.37 71.24 0.74 -0.14 16 2 C -0.25 -5.39 6.10 -20.14 -0.12 -5.51 16 3 C 0.03 0.81 11.96 85.23 1.02 1.83 16 4 N -0.33 -10.83 11.64 -57.02 -0.66 -11.49 16 5 N -0.37 -10.34 3.40 -351.78 -1.20 -11.54 16 6 C 0.13 3.04 6.82 85.63 0.58 3.62 16 7 C 0.52 17.99 8.11 87.66 0.71 18.70 16 8 O -0.58 -25.69 16.48 -3.03 -0.05 -25.74 16 9 N -0.64 -22.40 3.69 -857.91 -3.16 -25.57 16 10 C 0.10 3.15 7.44 83.26 0.62 3.77 16 11 C -0.01 -0.46 2.96 -11.13 -0.03 -0.49 16 12 C -0.52 -26.36 9.38 25.60 0.24 -26.12 16 13 H 0.04 2.10 8.06 -2.91 -0.02 2.08 16 14 C 0.02 0.88 5.47 84.65 0.46 1.34 16 15 N -0.95 -54.89 13.96 21.45 0.30 -54.59 16 16 Si 0.94 37.86 27.15 68.60 1.86 39.72 16 17 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.29 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.22 -7.17 5.72 99.48 0.57 -6.60 16 20 C 0.11 4.40 8.17 83.17 0.68 5.08 16 21 C 0.05 1.05 11.36 83.54 0.95 2.00 16 22 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 23 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.20 3.93 8.06 -2.91 -0.02 3.91 16 26 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.16 2.47 8.07 -2.39 -0.02 2.45 16 28 H 0.09 2.92 8.10 -2.39 -0.02 2.90 16 29 H 0.10 2.50 7.15 -2.39 -0.02 2.49 16 30 H 0.07 2.74 7.03 -2.39 -0.02 2.72 16 31 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.07 2.95 8.10 -2.39 -0.02 2.93 16 34 H 0.21 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -74.14 296.04 3.89 -70.25 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.95 Total: 14.87 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 5.85 Total: 4.09 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -4.72 Total: -103.19 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.05 Total: -25.74 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 1.86 Total: 39.72 kcal Total: -74.14 3.89 -70.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598035332.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.014 kcal (2) G-P(sol) polarization free energy of solvation -74.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds