Wall clock time and date at job start Mon Mar 30 2020 04:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50700 * 109.47414 * 2 1 4 4 C 1.35367 * 126.38664 * 84.99778 * 3 2 1 5 5 C 1.41504 * 105.50330 * 180.26713 * 4 3 2 6 6 C 1.47705 * 126.51517 * 179.75761 * 5 4 3 7 7 O 1.21573 * 120.00471 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99735 * 179.97438 * 6 5 4 9 9 C 1.47068 * 136.05745 * 359.62557 * 8 6 5 10 10 C 1.53232 * 88.08418 * 207.20771 * 9 8 6 11 11 C 1.50704 * 114.32516 * 220.47341 * 10 9 8 12 12 H 1.08001 * 119.99891 * 93.76296 * 11 10 9 13 13 C 1.37876 * 119.99848 * 273.75713 * 11 10 9 14 14 N 1.31510 * 120.00018 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99679 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47121 * 60.00423 * 15 13 11 17 17 H 1.48502 * 109.46675 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47415 * 300.00075 * 15 13 11 19 19 C 1.47062 * 136.05727 * 180.02562 * 8 6 5 20 20 N 1.31810 * 106.96232 * 359.60519 * 5 4 3 21 21 N 1.28472 * 110.07173 * 0.41005 * 20 5 4 22 22 H 0.97001 * 124.87765 * 179.77438 * 21 20 5 23 23 H 1.09005 * 109.47188 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47289 * 300.00085 * 1 2 3 25 25 H 1.09000 * 109.47517 * 60.00252 * 1 2 3 26 26 H 1.09006 * 109.47289 * 239.99915 * 2 1 3 27 27 H 1.09001 * 109.47333 * 120.00266 * 2 1 3 28 28 H 1.08002 * 127.24456 * 359.97438 * 4 3 2 29 29 H 1.08993 * 113.46850 * 321.94280 * 9 8 6 30 30 H 1.09002 * 113.46407 * 92.37796 * 9 8 6 31 31 H 1.08996 * 114.19856 * 87.73096 * 10 9 8 32 32 H 0.97000 * 120.00002 * 179.97438 * 14 13 11 33 33 H 1.08995 * 113.46713 * 267.62101 * 19 8 6 34 34 H 1.09000 * 113.46763 * 38.06201 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2105 2.2096 1.0856 5 6 2.6867 3.4435 0.5826 6 6 3.0291 4.6422 1.3747 7 8 2.9102 4.6258 2.5845 8 7 3.4743 5.7540 0.7563 9 6 3.7518 6.1549 -0.6312 10 6 4.7828 7.1476 -0.0838 11 6 4.7892 8.4836 -0.7811 12 1 4.2054 9.3018 -0.3860 13 6 5.5406 8.6614 -1.9234 14 7 6.2520 7.6652 -2.4042 15 14 5.5491 10.3176 -2.7873 16 1 6.0578 11.3580 -1.8579 17 1 6.4292 10.2484 -3.9815 18 1 4.1678 10.6631 -3.2090 19 6 3.9030 7.0977 1.1728 20 7 2.7698 3.3185 -0.7270 21 7 2.3881 2.1446 -1.0830 22 1 2.3602 1.8242 -1.9981 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0234 1.9529 2.1179 29 1 4.1932 5.3603 -1.2326 30 1 2.9050 6.6348 -1.1219 31 1 5.7794 6.7275 0.0516 32 1 6.7803 7.7902 -3.2080 33 1 3.0970 7.8314 1.1679 34 1 4.4728 7.1029 2.1020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598036676.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:11 Heat of formation + Delta-G solvation = 65.222759 kcal Electronic energy + Delta-G solvation = -17584.975600 eV Core-core repulsion = 14713.553519 eV Total energy + Delta-G solvation = -2871.422081 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.51045 -39.16817 -36.89900 -34.43622 -32.63527 -31.70764 -29.64536 -28.75695 -25.44570 -24.83270 -23.90855 -22.96264 -20.95617 -20.02988 -17.91655 -17.59418 -16.75349 -16.06010 -15.57448 -15.05384 -14.66766 -14.59249 -14.25591 -13.85500 -13.38858 -13.13784 -12.63848 -12.39265 -12.12380 -11.81184 -11.42034 -11.39986 -11.22072 -10.90690 -10.82649 -10.56993 -10.25791 -9.70846 -9.20277 -9.13455 -8.99088 -8.87107 -8.51784 -7.76387 -6.12029 -4.17471 1.89242 2.24939 2.95910 3.29058 3.34005 3.36244 3.65160 3.94262 4.37729 4.48211 4.64029 4.80481 5.00270 5.17031 5.25874 5.38412 5.50550 5.61804 5.75158 5.89817 6.02161 6.14605 6.27317 6.33492 6.48397 6.54003 6.73643 6.85112 7.00231 7.13213 7.62561 7.85912 8.04359 8.25290 8.55343 8.85468 8.86636 9.48589 10.97732 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.035844 B = 0.004792 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.965669 B = 5841.327720 C = 6389.810568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C 0.006 3.994 4 C -0.180 4.180 5 C 0.003 3.997 6 C 0.615 3.385 7 O -0.560 6.560 8 N -0.629 5.629 9 C 0.109 3.891 10 C 0.031 3.969 11 C -0.517 4.517 12 H 0.063 0.937 13 C 0.069 3.931 14 N -0.885 5.885 15 Si 0.896 3.104 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.101 3.899 20 N -0.243 5.243 21 N -0.385 5.385 22 H 0.442 0.558 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.159 0.841 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.264 0.736 33 H 0.075 0.925 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.703 -13.908 0.572 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.119 4.119 4 C -0.208 4.208 5 C -0.158 4.158 6 C 0.402 3.598 7 O -0.439 6.439 8 N -0.361 5.361 9 C -0.013 4.013 10 C 0.012 3.988 11 C -0.555 4.555 12 H 0.081 0.919 13 C -0.135 4.135 14 N -0.522 5.522 15 Si 0.723 3.277 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.020 4.020 20 N -0.078 5.078 21 N -0.099 5.099 22 H 0.285 0.715 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.176 0.824 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.400 -13.527 0.240 15.925 hybrid contribution -0.263 0.173 -0.479 0.573 sum -8.662 -13.354 -0.238 15.919 Atomic orbital electron populations 1.21784 0.94204 1.02007 1.02707 1.20073 0.96282 0.88909 1.03773 1.21386 1.06221 0.96768 0.87567 1.21464 1.07389 0.92377 0.99553 1.22032 1.07342 0.96651 0.89806 1.16424 0.76984 0.80732 0.85643 1.90719 1.56370 1.83542 1.13265 1.49833 1.61553 1.11550 1.13184 1.23516 0.98635 0.97182 0.81964 1.20328 0.93721 0.95104 0.89624 1.20869 1.28702 0.96046 1.09876 0.91876 1.25020 0.94585 0.96769 0.97111 1.69954 1.28793 1.31201 1.22261 0.86602 0.78077 0.84035 0.78975 1.20059 1.21278 1.20098 1.23388 0.97489 0.80567 1.00598 1.73823 1.16963 1.01684 1.15363 1.43407 1.47881 1.08959 1.09664 0.71455 0.91914 0.91878 0.92707 0.90792 0.89202 0.82352 0.91395 0.91093 0.91426 0.92664 0.90702 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.15 0.37 -0.66 16 2 C -0.05 -0.39 6.49 -27.89 -0.18 -0.57 16 3 C 0.01 0.07 6.48 -82.21 -0.53 -0.46 16 4 C -0.18 -2.75 10.73 -39.36 -0.42 -3.17 16 5 C 0.00 0.06 7.10 -82.77 -0.59 -0.53 16 6 C 0.61 13.61 8.08 -12.39 -0.10 13.51 16 7 O -0.56 -13.42 17.70 5.30 0.09 -13.33 16 8 N -0.63 -14.10 3.69 -186.60 -0.69 -14.79 16 9 C 0.11 2.51 7.35 -8.65 -0.06 2.45 16 10 C 0.03 0.77 3.77 -91.40 -0.34 0.43 16 11 C -0.52 -13.53 8.83 -34.44 -0.30 -13.83 16 12 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 14 N -0.89 -24.69 13.26 55.43 0.74 -23.96 16 15 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 C 0.10 2.23 8.19 -8.52 -0.07 2.16 16 20 N -0.24 -4.27 10.77 33.42 0.36 -3.91 16 21 N -0.39 -4.93 6.83 33.50 0.23 -4.70 16 22 H 0.44 3.93 8.96 -190.44 -1.71 2.22 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.16 2.22 8.06 -52.49 -0.42 1.80 16 29 H 0.07 1.61 7.51 -51.93 -0.39 1.22 16 30 H 0.07 1.62 8.10 -51.93 -0.42 1.20 16 31 H 0.07 1.81 8.11 -51.93 -0.42 1.39 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.07 1.57 8.10 -51.93 -0.42 1.14 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 299.28 15.07 4.51 4.51 Total: -1.00 -31.70 299.28 -7.98 -39.68 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.86 Total: 0.06 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.34 Total: 1.05 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.63 Total: -47.36 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.09 Total: -13.33 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.70 -7.98 -39.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598036676.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.907 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds