Wall clock time and date at job start Mon Mar 30 2020 04:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27566 * 126.41506 * 2 1 4 4 N 1.39157 * 113.16186 * 179.88838 * 3 2 1 5 5 C 1.46501 * 124.43638 * 180.18525 * 4 3 2 6 6 H 1.09002 * 109.46635 * 180.24065 * 5 4 3 7 7 C 1.52993 * 109.47404 * 300.24264 * 5 4 3 8 8 C 1.52998 * 109.47134 * 60.24409 * 5 4 3 9 9 C 1.47200 * 109.47545 * 64.99648 * 8 5 4 10 10 N 4.97429 * 134.47424 * 72.07229 * 2 1 3 11 11 C 1.34951 * 111.12033 * 0.40102 * 4 3 2 12 12 O 1.21297 * 127.49770 * 179.81170 * 11 4 3 13 13 C 1.51443 * 126.41522 * 180.31370 * 2 1 3 14 14 H 1.09005 * 110.60528 * 61.29625 * 13 2 1 15 15 C 1.52992 * 110.61038 * 298.47808 * 13 2 1 16 16 C 1.50703 * 109.47286 * 174.99862 * 15 13 2 17 17 H 1.07996 * 120.00096 * 0.02562 * 16 15 13 18 18 C 1.37876 * 119.99688 * 179.97438 * 16 15 13 19 19 N 1.31516 * 120.00373 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99516 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47139 * 90.00389 * 20 18 16 22 22 H 1.48504 * 109.46999 * 210.00145 * 20 18 16 23 23 H 1.48496 * 109.47161 * 329.99641 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68468 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.68569 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.68550 * 1 2 3 27 27 H 1.09004 * 109.47136 * 299.99914 * 7 5 4 28 28 H 1.09002 * 109.47196 * 59.99741 * 7 5 4 29 29 H 1.09000 * 109.47445 * 180.02562 * 7 5 4 30 30 H 1.08999 * 109.47504 * 184.99940 * 8 5 4 31 31 H 1.09008 * 109.47139 * 304.99682 * 8 5 4 32 32 H 1.08995 * 109.47384 * 295.00584 * 15 13 2 33 33 H 1.09002 * 109.47196 * 54.99864 * 15 13 2 34 34 H 0.97001 * 119.99931 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7075 0.0025 5 6 4.7022 1.6937 0.0070 6 1 5.6626 1.1783 0.0038 7 6 4.5932 2.5768 -1.2376 8 6 4.5945 2.5639 1.2607 9 6 4.8189 1.7335 2.4553 10 7 4.9920 1.0926 3.3771 11 6 3.8035 -0.6292 -0.0045 12 8 4.8579 -1.2289 -0.0077 13 6 2.4060 -1.2187 -0.0067 14 1 2.2394 -1.8134 -0.9049 15 6 2.1763 -2.0643 1.2474 16 6 2.9908 -3.3290 1.1568 17 1 3.6108 -3.5112 0.2915 18 6 2.9454 -4.2529 2.1792 19 7 2.1909 -4.0308 3.2333 20 14 3.9557 -5.8202 2.0672 21 1 5.2940 -5.5904 2.6681 22 1 3.2633 -6.9090 2.8023 23 1 4.1126 -6.2071 0.6421 24 1 -0.3633 -0.0057 1.0277 25 1 -0.3633 -0.8872 -0.5187 26 1 -0.3633 0.8928 -0.5090 27 1 4.6700 1.9568 -2.1309 28 1 3.6327 3.0921 -1.2345 29 1 5.3995 3.3102 -1.2346 30 1 5.3452 3.3533 1.2208 31 1 3.6009 3.0096 1.3095 32 1 2.4804 -1.4985 2.1280 33 1 1.1191 -2.3179 1.3260 34 1 2.1586 -4.6811 3.9523 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601935690.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:24 Heat of formation + Delta-G solvation = 33.994160 kcal Electronic energy + Delta-G solvation = -18283.388871 eV Core-core repulsion = 15410.612616 eV Total energy + Delta-G solvation = -2872.776255 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.83607 -37.00520 -36.80586 -35.18707 -33.23766 -31.50746 -30.36874 -28.34465 -27.67178 -25.90809 -22.80794 -21.74472 -20.17214 -18.85425 -17.53926 -16.70647 -16.28294 -15.59097 -14.64311 -14.55321 -14.24064 -14.04459 -13.78126 -13.23395 -13.16792 -13.09034 -12.47662 -12.30865 -12.23473 -12.16935 -11.75367 -11.64929 -11.53454 -11.40861 -11.08870 -11.06462 -10.77789 -10.58836 -10.20576 -9.52965 -9.36012 -8.80575 -8.34821 -8.17993 -6.00279 -4.01680 2.15179 2.71029 2.96116 3.07141 3.22845 3.37081 3.43139 3.47134 4.08868 4.39057 4.48518 4.69357 4.84305 5.07455 5.11571 5.28411 5.37121 5.43139 5.52411 5.57201 5.76508 5.77204 5.85073 5.97087 6.06893 6.14045 6.38944 6.63089 6.84112 7.42750 7.49611 7.82891 7.97209 8.14392 8.30595 8.51813 9.02832 9.62668 11.11042 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021436 B = 0.007507 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.889289 B = 3728.714599 C = 4161.531753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.105 3.895 3 N -0.257 5.257 4 N -0.483 5.483 5 C 0.172 3.828 6 H 0.105 0.895 7 C -0.155 4.155 8 C -0.033 4.033 9 C 0.191 3.809 10 N -0.416 5.416 11 C 0.511 3.489 12 O -0.485 6.485 13 C -0.132 4.132 14 H 0.122 0.878 15 C 0.056 3.944 16 C -0.515 4.515 17 H 0.063 0.937 18 C 0.060 3.940 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.018 0.982 33 H 0.037 0.963 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 15.196 -9.331 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 N -0.064 5.064 4 N -0.305 5.305 5 C 0.067 3.933 6 H 0.123 0.877 7 C -0.213 4.213 8 C -0.074 4.074 9 C -0.127 4.127 10 N -0.092 5.092 11 C 0.299 3.701 12 O -0.355 6.355 13 C -0.156 4.156 14 H 0.139 0.861 15 C 0.018 3.982 16 C -0.554 4.554 17 H 0.081 0.919 18 C -0.142 4.142 19 N -0.535 5.535 20 Si 0.723 3.277 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.429 14.887 -7.781 16.803 hybrid contribution 0.635 -1.442 -0.212 1.590 sum 0.207 13.445 -7.992 15.643 Atomic orbital electron populations 1.20289 0.85331 1.03532 1.04009 1.25439 0.97269 0.91883 0.94224 1.74365 0.88842 1.26863 1.16285 1.49893 1.02581 1.06105 1.71966 1.20900 0.89455 0.89066 0.93831 0.87664 1.22072 1.03261 0.99533 0.96436 1.19701 1.05954 0.95727 0.86010 1.29023 0.94094 0.94734 0.94893 1.81291 1.08164 1.07756 1.11966 1.21456 0.92069 0.81878 0.74681 1.90718 1.31230 1.65824 1.47721 1.22093 0.90640 0.96488 1.06357 0.86076 1.18867 0.98482 0.93172 0.87661 1.21147 1.26398 1.02721 1.05100 0.91893 1.24955 0.95451 0.98575 0.95180 1.69952 1.39418 1.36040 1.08116 0.86533 0.80333 0.82638 0.78198 1.20693 1.21234 1.19724 0.89396 0.89592 0.90512 0.91846 0.90905 0.90967 0.86353 0.86496 0.96412 0.94456 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.47 36.01 0.38 -0.48 16 2 C 0.10 1.69 6.93 -78.72 -0.55 1.14 16 3 N -0.26 -4.06 11.72 35.53 0.42 -3.64 16 4 N -0.48 -8.25 2.94 -53.41 -0.16 -8.41 16 5 C 0.17 2.18 2.97 -67.93 -0.20 1.98 16 6 H 0.11 1.45 7.68 -51.93 -0.40 1.05 16 7 C -0.15 -1.38 9.40 37.15 0.35 -1.03 16 8 C -0.03 -0.35 5.29 -29.52 -0.16 -0.51 16 9 C 0.19 3.16 15.14 -20.76 -0.31 2.84 16 10 N -0.42 -8.67 18.54 42.16 0.78 -7.89 16 11 C 0.51 11.08 7.60 -10.43 -0.08 11.00 16 12 O -0.49 -12.27 16.79 5.54 0.09 -12.18 16 13 C -0.13 -2.72 2.96 -92.08 -0.27 -2.99 16 14 H 0.12 2.36 8.14 -51.93 -0.42 1.94 16 15 C 0.06 1.44 4.49 -27.89 -0.13 1.32 16 16 C -0.52 -14.98 8.44 -34.44 -0.29 -15.27 16 17 H 0.06 1.85 7.43 -52.49 -0.39 1.46 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 20 Si 0.90 22.96 29.54 -169.99 -5.02 17.94 16 21 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 24 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.12 1.13 8.08 -51.92 -0.42 0.71 16 32 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 33 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 306.16 15.07 4.61 4.61 Total: -1.00 -37.08 306.16 -4.46 -41.54 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -4.57 Total: -4.91 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.36 Total: -0.33 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 1.78 Total: -46.68 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -37.08 -4.46 -41.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601935690.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.535 kcal (2) G-P(sol) polarization free energy of solvation -37.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds