Wall clock time and date at job start Mon Mar 30 2020 04:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27566 * 126.41506 * 2 1 4 4 N 1.39157 * 113.16186 * 179.88838 * 3 2 1 5 5 C 1.46501 * 124.43638 * 180.18525 * 4 3 2 6 6 H 1.09002 * 109.46635 * 180.24065 * 5 4 3 7 7 C 1.52993 * 109.47404 * 300.24264 * 5 4 3 8 8 C 1.52998 * 109.47134 * 60.24409 * 5 4 3 9 9 C 1.47200 * 109.47545 * 64.99648 * 8 5 4 10 10 N 4.97429 * 134.47424 * 72.07229 * 2 1 3 11 11 C 1.34951 * 111.12033 * 0.40102 * 4 3 2 12 12 O 1.21297 * 127.49770 * 179.81170 * 11 4 3 13 13 C 1.51443 * 126.41522 * 180.31370 * 2 1 3 14 14 H 1.09005 * 110.60528 * 61.29625 * 13 2 1 15 15 C 1.52992 * 110.61038 * 298.47808 * 13 2 1 16 16 C 1.50703 * 109.47286 * 174.99862 * 15 13 2 17 17 H 1.07996 * 120.00096 * 0.02562 * 16 15 13 18 18 C 1.37876 * 119.99688 * 179.97438 * 16 15 13 19 19 N 1.31516 * 120.00373 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99516 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47139 * 90.00389 * 20 18 16 22 22 H 1.48504 * 109.46999 * 210.00145 * 20 18 16 23 23 H 1.48496 * 109.47161 * 329.99641 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.68468 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.68569 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.68550 * 1 2 3 27 27 H 1.09004 * 109.47136 * 299.99914 * 7 5 4 28 28 H 1.09002 * 109.47196 * 59.99741 * 7 5 4 29 29 H 1.09000 * 109.47445 * 180.02562 * 7 5 4 30 30 H 1.08999 * 109.47504 * 184.99940 * 8 5 4 31 31 H 1.09008 * 109.47139 * 304.99682 * 8 5 4 32 32 H 1.08995 * 109.47384 * 295.00584 * 15 13 2 33 33 H 1.09002 * 109.47196 * 54.99864 * 15 13 2 34 34 H 0.97001 * 119.99931 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7075 0.0025 5 6 4.7022 1.6937 0.0070 6 1 5.6626 1.1783 0.0038 7 6 4.5932 2.5768 -1.2376 8 6 4.5945 2.5639 1.2607 9 6 4.8189 1.7335 2.4553 10 7 4.9920 1.0926 3.3771 11 6 3.8035 -0.6292 -0.0045 12 8 4.8579 -1.2289 -0.0077 13 6 2.4060 -1.2187 -0.0067 14 1 2.2394 -1.8134 -0.9049 15 6 2.1763 -2.0643 1.2474 16 6 2.9908 -3.3290 1.1568 17 1 3.6108 -3.5112 0.2915 18 6 2.9454 -4.2529 2.1792 19 7 2.1909 -4.0308 3.2333 20 14 3.9557 -5.8202 2.0672 21 1 5.2940 -5.5904 2.6681 22 1 3.2633 -6.9090 2.8023 23 1 4.1126 -6.2071 0.6421 24 1 -0.3633 -0.0057 1.0277 25 1 -0.3633 -0.8872 -0.5187 26 1 -0.3633 0.8928 -0.5090 27 1 4.6700 1.9568 -2.1309 28 1 3.6327 3.0921 -1.2345 29 1 5.3995 3.3102 -1.2346 30 1 5.3452 3.3533 1.2208 31 1 3.6009 3.0096 1.3095 32 1 2.4804 -1.4985 2.1280 33 1 1.1191 -2.3179 1.3260 34 1 2.1586 -4.6811 3.9523 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601935690.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:24 Heat of formation + Delta-G solvation = 7.756558 kcal Electronic energy + Delta-G solvation = -18284.526619 eV Core-core repulsion = 15410.612616 eV Total energy + Delta-G solvation = -2873.914003 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.31069 -38.46898 -38.27047 -36.55939 -35.28537 -32.90111 -32.11418 -29.28825 -28.78806 -27.82713 -24.67013 -22.95475 -21.78207 -20.28687 -18.90078 -18.36779 -17.88645 -17.18648 -16.61218 -16.05233 -15.78334 -15.38447 -15.06338 -14.57925 -14.40357 -14.35768 -14.17927 -13.67011 -13.50187 -13.35000 -13.31874 -13.17250 -12.90558 -12.78417 -12.67274 -12.62903 -12.24461 -12.13966 -11.84819 -11.60268 -11.24984 -10.70955 -10.44141 -9.57045 -8.28723 -6.36707 0.70127 1.29657 1.33286 1.41794 1.43674 1.59465 1.75952 1.77976 2.34109 2.95912 3.03891 3.08771 3.31772 3.77774 3.98249 4.13442 4.21949 4.31388 4.50149 4.65525 4.71532 4.78690 4.89146 4.91094 4.98473 5.14644 5.27991 5.30396 5.34752 5.43855 5.63386 5.69114 6.08718 6.57014 6.70276 6.74881 6.93853 7.31182 8.82580 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021436 B = 0.007507 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.889289 B = 3728.714599 C = 4161.531753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.114 3.886 3 N -0.242 5.242 4 N -0.477 5.477 5 C 0.157 3.843 6 H 0.089 0.911 7 C -0.142 4.142 8 C -0.028 4.028 9 C 0.218 3.782 10 N -0.507 5.507 11 C 0.494 3.506 12 O -0.537 6.537 13 C -0.140 4.140 14 H 0.130 0.870 15 C 0.071 3.929 16 C -0.531 4.531 17 H 0.052 0.948 18 C 0.006 3.994 19 N -0.927 5.927 20 Si 0.955 3.045 21 H -0.288 1.288 22 H -0.270 1.270 23 H -0.261 1.261 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.180 0.820 31 H 0.139 0.861 32 H -0.027 1.027 33 H 0.037 0.963 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 17.353 -11.069 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 N -0.048 5.048 4 N -0.297 5.297 5 C 0.054 3.946 6 H 0.107 0.893 7 C -0.199 4.199 8 C -0.068 4.068 9 C -0.099 4.099 10 N -0.185 5.185 11 C 0.283 3.717 12 O -0.412 6.412 13 C -0.164 4.164 14 H 0.147 0.853 15 C 0.033 3.967 16 C -0.569 4.569 17 H 0.070 0.930 18 C -0.192 4.192 19 N -0.568 5.568 20 Si 0.780 3.220 21 H -0.215 1.215 22 H -0.194 1.194 23 H -0.185 1.185 24 H 0.107 0.893 25 H 0.117 0.883 26 H 0.131 0.869 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.131 0.869 30 H 0.197 0.803 31 H 0.157 0.843 32 H -0.008 1.008 33 H 0.056 0.944 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.167 17.100 -9.537 19.615 hybrid contribution 0.845 -2.030 0.288 2.218 sum -0.322 15.070 -9.249 17.685 Atomic orbital electron populations 1.20522 0.81798 1.05990 1.04728 1.25932 0.98968 0.89311 0.93675 1.74426 0.87956 1.25994 1.16460 1.50125 1.04045 1.05379 1.70161 1.21396 0.87342 0.88924 0.96910 0.89316 1.22026 1.05495 0.99154 0.93247 1.20213 1.09178 0.95475 0.81943 1.30231 0.91510 0.93335 0.94817 1.81309 1.11397 1.10584 1.15168 1.21651 0.91646 0.83812 0.74613 1.90667 1.32739 1.67347 1.50406 1.21984 0.92089 0.98116 1.04170 0.85260 1.18524 0.97588 0.92246 0.88379 1.21481 1.26473 1.04195 1.04789 0.92955 1.25801 0.96593 1.01913 0.94932 1.70048 1.40721 1.37240 1.08752 0.85602 0.78296 0.79267 0.78866 1.21502 1.19437 1.18481 0.89283 0.88350 0.86915 0.93148 0.89856 0.86857 0.80275 0.84315 1.00850 0.94436 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 10.47 71.24 0.75 -0.74 16 2 C 0.11 3.50 6.93 46.83 0.32 3.83 16 3 N -0.24 -7.13 11.72 -40.84 -0.48 -7.61 16 4 N -0.48 -15.83 2.94 -441.17 -1.30 -17.13 16 5 C 0.16 3.63 2.97 44.99 0.13 3.76 16 6 H 0.09 2.38 7.68 -2.39 -0.02 2.36 16 7 C -0.14 -1.95 9.40 71.98 0.68 -1.27 16 8 C -0.03 -0.50 5.29 28.79 0.15 -0.35 16 9 C 0.22 7.10 15.14 89.44 1.35 8.45 16 10 N -0.51 -21.95 18.54 20.01 0.37 -21.58 16 11 C 0.49 21.96 7.60 87.94 0.67 22.63 16 12 O -0.54 -28.44 16.79 -3.08 -0.05 -28.49 16 13 C -0.14 -5.83 2.96 -11.74 -0.03 -5.87 16 14 H 0.13 5.09 8.14 -2.38 -0.02 5.07 16 15 C 0.07 3.76 4.49 29.85 0.13 3.90 16 16 C -0.53 -31.94 8.44 25.60 0.22 -31.73 16 17 H 0.05 3.19 7.43 -2.91 -0.02 3.17 16 18 C 0.01 0.35 5.46 84.65 0.46 0.81 16 19 N -0.93 -58.30 13.29 21.45 0.28 -58.02 16 20 Si 0.95 47.98 29.54 68.60 2.03 50.01 16 21 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 22 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 24 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.18 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.14 2.04 8.08 -2.38 -0.02 2.02 16 32 H -0.03 -1.66 8.12 -2.39 -0.02 -1.68 16 33 H 0.04 1.95 8.12 -2.39 -0.02 1.93 16 34 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -87.44 306.16 6.78 -80.65 By element: Atomic # 1 Polarization: -2.36 SS G_CDS: 1.10 Total: -1.26 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 4.83 Total: 3.42 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -1.12 Total: -104.34 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.05 Total: -28.49 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -87.44 6.78 -80.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601935690.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.411 kcal (2) G-P(sol) polarization free energy of solvation -87.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds