Wall clock time and date at job start Mon Mar 30 2020 04:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31896 * 120.17806 * 2 1 4 4 N 1.28279 * 122.33017 * 179.97438 * 3 2 1 5 5 C 1.31940 * 122.54281 * 0.02562 * 4 3 2 6 6 C 1.38463 * 119.97760 * 359.97438 * 5 4 3 7 7 C 1.39822 * 120.17784 * 179.72309 * 2 1 3 8 8 C 1.47983 * 121.15703 * 0.02562 * 7 2 1 9 9 O 1.21572 * 119.99669 * 304.37820 * 8 7 2 10 10 N 1.34770 * 120.00042 * 124.37339 * 8 7 2 11 11 C 1.36793 * 119.99956 * 183.23765 * 10 8 7 12 12 H 1.08001 * 120.00192 * 125.50747 * 11 10 8 13 13 C 1.39101 * 120.00338 * 305.50607 * 11 10 8 14 14 N 1.31327 * 120.00601 * 184.04919 * 13 11 10 15 15 Si 1.86805 * 119.99903 * 4.05244 * 13 11 10 16 16 H 1.48498 * 109.46990 * 94.96939 * 15 13 11 17 17 H 1.48503 * 109.47201 * 214.97282 * 15 13 11 18 18 H 1.48503 * 109.46943 * 334.97183 * 15 13 11 19 19 C 1.46503 * 120.00065 * 3.24417 * 10 8 7 20 20 C 1.52999 * 109.47407 * 114.59011 * 19 10 8 21 21 C 1.52998 * 109.46972 * 234.58853 * 19 10 8 22 22 H 1.09004 * 109.47104 * 85.10969 * 1 2 3 23 23 H 1.08993 * 109.47396 * 325.11102 * 1 2 3 24 24 H 1.09007 * 109.47304 * 205.10866 * 1 2 3 25 25 H 1.07997 * 120.00862 * 179.97438 * 5 4 3 26 26 H 1.07995 * 121.09072 * 179.97438 * 6 5 4 27 27 H 0.96997 * 120.00301 * 180.02562 * 14 13 11 28 28 H 1.08997 * 109.47245 * 354.58758 * 19 10 8 29 29 H 1.09000 * 109.46905 * 65.00797 * 20 19 10 30 30 H 1.08997 * 109.47067 * 185.01157 * 20 19 10 31 31 H 1.09001 * 109.46737 * 305.01258 * 20 19 10 32 32 H 1.09007 * 109.47042 * 64.93098 * 21 19 10 33 33 H 1.08998 * 109.47150 * 184.93165 * 21 19 10 34 34 H 1.09002 * 109.47024 * 304.93787 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1402 0.0000 4 7 3.4519 1.1884 0.0005 5 6 4.2029 0.1036 0.0005 6 6 3.6106 -1.1480 0.0006 7 6 2.2098 -1.2087 0.0058 8 6 1.5000 -2.5072 0.0116 9 8 0.6864 -2.7513 0.8813 10 7 1.7553 -3.4189 -0.9475 11 6 1.0519 -4.5917 -0.9809 12 1 0.5325 -4.8844 -1.8814 13 6 1.0056 -5.4073 0.1449 14 7 0.3977 -6.5701 0.0890 15 14 1.8082 -4.8487 1.7366 16 1 0.7917 -4.1981 2.6018 17 1 2.3795 -6.0241 2.4420 18 1 2.8915 -3.8800 1.4313 19 6 2.7862 -3.1542 -1.9542 20 6 3.9315 -4.1548 -1.7868 21 6 2.1827 -3.2991 -3.3526 22 1 -0.3633 0.0876 -1.0240 23 1 -0.3634 0.8429 0.5878 24 1 -0.3634 -0.9306 0.4361 25 1 5.2793 0.1918 0.0005 26 1 4.2079 -2.0477 0.0002 27 1 0.3651 -7.1386 0.8742 28 1 3.1674 -2.1411 -1.8262 29 1 3.5698 -5.1603 -2.0022 30 1 4.7375 -3.9031 -2.4761 31 1 4.3029 -4.1139 -0.7629 32 1 1.4262 -2.5289 -3.5034 33 1 2.9679 -3.1887 -4.1004 34 1 1.7237 -4.2830 -3.4500 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706512426.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:17 Heat of formation + Delta-G solvation = 32.795747 kcal Electronic energy + Delta-G solvation = -19079.903622 eV Core-core repulsion = 16207.075399 eV Total energy + Delta-G solvation = -2872.828222 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.07548 -39.10867 -35.99920 -33.59754 -33.15502 -32.39552 -30.73867 -28.18257 -26.76996 -26.09075 -24.18959 -22.78867 -21.37721 -19.83403 -18.00907 -17.20466 -16.36835 -15.76377 -15.59329 -14.96530 -14.71781 -13.95003 -13.86366 -13.57883 -13.22515 -13.04830 -12.68220 -12.59211 -12.41810 -11.98155 -11.73318 -11.48183 -11.05253 -10.88084 -10.84070 -10.62975 -10.20694 -10.05698 -9.73968 -9.67890 -9.46031 -9.00217 -8.59814 -7.79850 -6.36978 -4.31228 0.74693 1.02868 3.00310 3.29727 3.49887 3.62250 3.75167 4.07805 4.19228 4.38434 4.62816 4.70769 4.79456 4.98731 5.21450 5.29568 5.37247 5.60318 5.64925 5.74628 5.79551 5.84566 5.99497 6.10883 6.18053 6.22871 6.27840 6.31982 6.54635 6.70035 6.76149 7.60615 7.83647 8.47406 8.57526 8.84181 9.14826 9.47420 10.64067 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023220 B = 0.010253 C = 0.009110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.561471 B = 2730.376277 C = 3072.680262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.106 3.894 3 N -0.249 5.249 4 N -0.245 5.245 5 C 0.028 3.972 6 C -0.103 4.103 7 C -0.097 4.097 8 C 0.495 3.505 9 O -0.535 6.535 10 N -0.437 5.437 11 C -0.334 4.334 12 H 0.102 0.898 13 C 0.081 3.919 14 N -0.863 5.863 15 Si 0.948 3.052 16 H -0.267 1.267 17 H -0.319 1.319 18 H -0.294 1.294 19 C 0.115 3.885 20 C -0.155 4.155 21 C -0.153 4.153 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.104 0.896 25 H 0.172 0.828 26 H 0.151 0.849 27 H 0.276 0.724 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.122 7.727 -3.553 11.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.038 4.038 3 N -0.092 5.092 4 N -0.087 5.087 5 C -0.136 4.136 6 C -0.133 4.133 7 C -0.112 4.112 8 C 0.284 3.716 9 O -0.420 6.420 10 N -0.157 5.157 11 C -0.460 4.460 12 H 0.119 0.881 13 C -0.128 4.128 14 N -0.497 5.497 15 Si 0.784 3.216 16 H -0.194 1.194 17 H -0.250 1.250 18 H -0.221 1.221 19 C 0.011 3.989 20 C -0.213 4.213 21 C -0.211 4.211 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.122 0.878 25 H 0.190 0.810 26 H 0.169 0.831 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.579 9.053 -3.097 11.612 hybrid contribution 0.680 -1.445 0.798 1.786 sum 7.260 7.608 -2.299 10.764 Atomic orbital electron populations 1.20909 0.86957 1.05698 1.03602 1.22967 0.99305 0.88637 0.92936 1.72905 1.01559 1.24293 1.10412 1.72793 0.99664 1.27692 1.08537 1.24136 1.02282 0.89447 0.97692 1.22701 0.94413 1.00173 0.96014 1.21556 0.94637 0.97143 0.97856 1.18247 0.84191 0.82315 0.86858 1.90431 1.37011 1.77081 1.37466 1.43703 1.31537 1.15444 1.25012 1.18785 1.30955 0.94258 1.02053 0.88103 1.25594 0.93989 0.93515 0.99734 1.69637 1.39691 1.09323 1.31064 0.85589 0.78478 0.74923 0.82631 1.19401 1.24990 1.22079 1.21371 0.89304 0.98151 0.90031 1.22080 0.96843 1.01479 1.00896 1.22015 1.00423 1.03507 0.95110 0.89982 0.90142 0.87789 0.81044 0.83104 0.91429 0.91249 0.90618 0.92670 0.93168 0.93192 0.92713 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.93 36.00 0.36 -1.50 16 2 C 0.11 1.93 6.91 -81.97 -0.57 1.37 16 3 N -0.25 -4.46 11.42 33.82 0.39 -4.08 16 4 N -0.25 -4.09 11.48 30.52 0.35 -3.74 16 5 C 0.03 0.39 11.30 -17.42 -0.20 0.20 16 6 C -0.10 -1.65 7.67 -38.76 -0.30 -1.95 16 7 C -0.10 -1.85 4.82 -104.57 -0.50 -2.36 16 8 C 0.49 11.23 4.33 -12.27 -0.05 11.17 16 9 O -0.54 -13.95 10.62 5.30 0.06 -13.89 16 10 N -0.44 -9.72 2.08 -108.75 -0.23 -9.94 16 11 C -0.33 -8.65 8.36 -15.02 -0.13 -8.77 16 12 H 0.10 2.74 7.16 -52.49 -0.38 2.37 16 13 C 0.08 2.25 5.35 -17.45 -0.09 2.15 16 14 N -0.86 -24.72 13.95 55.50 0.77 -23.94 16 15 Si 0.95 24.50 24.22 -169.99 -4.12 20.38 16 16 H -0.27 -7.37 6.73 56.52 0.38 -6.99 16 17 H -0.32 -8.10 7.11 56.52 0.40 -7.69 16 18 H -0.29 -7.22 6.31 56.52 0.36 -6.87 16 19 C 0.12 2.02 2.55 -67.93 -0.17 1.84 16 20 C -0.16 -2.48 8.92 37.16 0.33 -2.15 16 21 C -0.15 -2.42 9.15 37.16 0.34 -2.08 16 22 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.10 1.95 5.73 -51.93 -0.30 1.66 16 25 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 26 H 0.15 2.20 6.72 -52.49 -0.35 1.84 16 27 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.07 1.11 4.69 -51.93 -0.24 0.87 16 29 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.82 7.51 -51.93 -0.39 0.43 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.31 6.85 -51.93 -0.36 0.96 16 LS Contribution 276.88 15.07 4.17 4.17 Total: -1.00 -31.10 276.88 -3.75 -34.85 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -4.16 Total: -1.73 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -0.98 Total: -2.07 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 1.29 Total: -41.71 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.06 Total: -13.89 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.12 Total: 20.38 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.10 -3.75 -34.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706512426.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.641 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds