Wall clock time and date at job start Mon Mar 30 2020 03:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46490 * 109.47424 * 84.32904 * 3 2 1 5 5 C 1.37106 * 120.00377 * 270.06812 * 4 3 2 6 6 H 1.07998 * 119.99920 * 187.99338 * 5 4 3 7 7 C 1.38949 * 119.99703 * 7.98838 * 5 4 3 8 8 N 1.31417 * 119.99969 * 25.94924 * 7 5 4 9 9 Si 1.86797 * 119.99891 * 205.94565 * 7 5 4 10 10 H 1.48495 * 109.47040 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47077 * 120.00435 * 9 7 5 12 12 H 1.48502 * 109.47073 * 239.99825 * 9 7 5 13 13 C 1.34783 * 119.99891 * 90.06362 * 4 3 2 14 14 O 1.21292 * 119.99719 * 184.43762 * 13 4 3 15 15 C 1.50692 * 119.99996 * 4.43733 * 13 4 3 16 16 C 1.53004 * 119.30070 * 97.21193 * 15 13 4 17 17 C 1.53007 * 60.37596 * 111.30715 * 16 15 13 18 18 H 1.08996 * 119.29785 * 248.69307 * 17 16 15 19 19 C 1.54268 * 118.19642 * 93.61977 * 17 16 15 20 20 C 1.54892 * 104.19509 * 272.20968 * 19 17 16 21 21 H 1.08996 * 110.75307 * 279.62987 * 20 19 17 22 22 N 1.46903 * 110.91193 * 156.32918 * 20 19 17 23 23 C 1.54271 * 117.76163 * 302.03039 * 15 13 4 24 24 H 1.08999 * 109.47060 * 324.32890 * 3 2 1 25 25 H 1.08997 * 109.47156 * 204.33386 * 3 2 1 26 26 H 0.96997 * 119.99930 * 180.02562 * 8 7 5 27 27 H 1.08999 * 117.45513 * 3.71288 * 16 15 13 28 28 H 1.08995 * 117.44707 * 218.91350 * 16 15 13 29 29 H 1.09000 * 110.48600 * 30.88937 * 19 17 16 30 30 H 1.08994 * 110.48750 * 153.52974 * 19 17 16 31 31 H 1.00897 * 110.99899 * 66.58609 * 22 20 19 32 32 H 1.00894 * 110.99413 * 190.53272 * 22 20 19 33 33 H 1.09002 * 110.48549 * 1.92658 * 23 15 13 34 34 H 1.08997 * 110.48955 * 124.44039 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 -0.1356 -1.3743 5 6 3.3242 -1.3809 -1.9007 6 1 3.8043 -1.4809 -2.8629 7 6 2.9374 -2.5143 -1.1961 8 7 1.9489 -2.4459 -0.3329 9 14 3.8227 -4.1353 -1.4758 10 1 4.8906 -3.9474 -2.4903 11 1 4.4278 -4.5954 -0.2001 12 1 2.8536 -5.1516 -1.9587 13 6 3.3218 0.9633 -2.1215 14 8 3.6487 0.8497 -3.2840 15 6 3.1677 2.3331 -1.5125 16 6 4.4071 3.0669 -0.9964 17 6 3.6783 3.5920 -2.2351 18 1 4.1660 3.5286 -3.2078 19 6 2.6011 4.6791 -2.0408 20 6 1.3007 3.8816 -1.7724 21 1 0.8693 3.5208 -2.7061 22 7 0.3284 4.6976 -1.0329 23 6 1.7980 2.6991 -0.9044 24 1 2.9716 -0.8340 0.5993 25 1 2.9709 0.9372 0.4234 26 1 1.6791 -3.2370 0.1593 27 1 5.3743 2.5876 -1.1479 28 1 4.3051 3.6376 -0.0735 29 1 2.8453 5.3096 -1.1859 30 1 2.4998 5.2814 -2.9436 31 1 0.0020 5.4691 -1.5951 32 1 -0.4435 4.1346 -0.7085 33 1 1.1105 1.8565 -0.9779 34 1 1.9121 3.0076 0.1348 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712982468.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:05 Heat of formation + Delta-G solvation = 37.664374 kcal Electronic energy + Delta-G solvation = -18732.226056 eV Core-core repulsion = 15859.608953 eV Total energy + Delta-G solvation = -2872.617103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.12085 -37.72153 -35.85126 -34.32546 -33.86430 -31.85945 -28.54564 -28.42165 -27.26111 -25.14418 -22.25236 -20.89372 -20.03066 -18.41617 -17.88899 -16.34362 -16.20257 -15.69094 -15.15206 -15.03029 -14.28924 -14.02610 -13.39983 -13.29993 -12.89545 -12.77763 -12.74735 -12.02216 -11.76831 -11.61544 -11.27481 -11.19116 -11.08361 -10.95966 -10.64670 -10.43040 -10.36431 -10.28664 -9.96029 -9.39208 -9.24579 -8.65243 -8.53039 -8.12288 -6.55561 -3.96045 3.05520 3.21284 3.27959 3.42945 3.75553 3.93189 4.02014 4.11884 4.41547 4.67485 4.86964 4.90178 5.05318 5.14055 5.32868 5.40873 5.51989 5.66675 5.68070 5.88696 5.96096 5.99739 6.07052 6.15253 6.31954 6.38404 6.39580 6.56926 6.59207 7.21278 7.44822 7.46257 7.87611 8.27483 8.75772 8.98590 9.20019 9.75514 10.50255 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.029873 B = 0.007851 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.075502 B = 3565.733029 C = 4168.442488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.255 3.745 3 C 0.219 3.781 4 N -0.437 5.437 5 C -0.316 4.316 6 H 0.111 0.889 7 C 0.033 3.967 8 N -0.873 5.873 9 Si 0.924 3.076 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.283 1.283 13 C 0.492 3.508 14 O -0.574 6.574 15 C -0.157 4.157 16 C -0.129 4.129 17 C -0.137 4.137 18 H 0.116 0.884 19 C -0.083 4.083 20 C 0.083 3.917 21 H 0.044 0.956 22 N -0.843 5.843 23 C -0.087 4.087 24 H 0.127 0.873 25 H 0.087 0.913 26 H 0.273 0.727 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.338 0.662 32 H 0.343 0.657 33 H 0.076 0.924 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.646 10.150 2.987 10.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.062 4.062 3 C 0.092 3.908 4 N -0.156 5.156 5 C -0.442 4.442 6 H 0.129 0.871 7 C -0.171 4.171 8 N -0.512 5.512 9 Si 0.750 3.250 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.209 1.209 13 C 0.281 3.719 14 O -0.457 6.457 15 C -0.160 4.160 16 C -0.167 4.167 17 C -0.156 4.156 18 H 0.134 0.866 19 C -0.121 4.121 20 C -0.028 4.028 21 H 0.062 0.938 22 N -0.372 5.372 23 C -0.125 4.125 24 H 0.145 0.855 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.095 0.905 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.628 10.047 3.025 10.618 hybrid contribution -0.116 -1.421 -0.822 1.646 sum 1.512 8.626 2.203 9.030 Atomic orbital electron populations 1.80896 1.13517 1.13037 1.08418 1.29168 0.95342 0.89247 0.92456 1.18880 0.81702 1.03094 0.87145 1.43605 1.56373 1.05717 1.09951 1.19813 1.37583 0.80337 1.06501 0.87099 1.25222 0.95162 0.99866 0.96858 1.69926 1.22520 1.31253 1.27505 0.85903 0.79678 0.80907 0.78497 1.19065 1.20335 1.20930 1.18857 0.83647 0.83596 0.85849 1.90532 1.52497 1.86169 1.16508 1.22217 0.94897 0.92975 1.05960 1.23076 0.95137 1.01107 0.97348 1.23167 1.00875 0.93787 0.97772 0.86602 1.21923 0.92438 0.96261 1.01492 1.22511 0.92698 0.92775 0.94801 0.93761 1.58733 1.19974 1.14085 1.44415 1.22167 0.93928 0.97385 0.99017 0.85539 0.89562 0.91598 0.88002 0.88512 0.90386 0.91742 0.85041 0.84451 0.90537 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.29 18.27 42.15 0.77 -10.52 16 2 C 0.26 5.68 10.57 -20.76 -0.22 5.47 16 3 C 0.22 4.48 4.76 -6.83 -0.03 4.45 16 4 N -0.44 -10.37 2.58 -117.94 -0.30 -10.67 16 5 C -0.32 -8.23 9.41 -14.93 -0.14 -8.37 16 6 H 0.11 3.07 7.34 -52.49 -0.39 2.69 16 7 C 0.03 0.80 4.88 -17.47 -0.09 0.72 16 8 N -0.87 -21.90 9.21 55.50 0.51 -21.39 16 9 Si 0.92 19.59 29.62 -169.99 -5.04 14.55 16 10 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 C 0.49 11.41 7.18 -10.99 -0.08 11.33 16 14 O -0.57 -15.39 16.43 5.55 0.09 -15.30 16 15 C -0.16 -2.79 1.44 -154.54 -0.22 -3.02 16 16 C -0.13 -1.86 9.86 -26.73 -0.26 -2.12 16 17 C -0.14 -2.12 6.57 -89.50 -0.59 -2.71 16 18 H 0.12 1.90 8.14 -51.93 -0.42 1.48 16 19 C -0.08 -1.10 6.32 -25.07 -0.16 -1.26 16 20 C 0.08 1.22 4.03 -65.72 -0.27 0.96 16 21 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 22 N -0.84 -10.31 9.37 -2.98 -0.03 -10.34 16 23 C -0.09 -1.44 4.33 -25.07 -0.11 -1.55 16 24 H 0.13 2.64 6.30 -51.93 -0.33 2.31 16 25 H 0.09 1.44 6.24 -51.93 -0.32 1.11 16 26 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 27 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.34 3.41 9.08 -39.29 -0.36 3.06 16 32 H 0.34 4.17 9.03 -39.30 -0.35 3.82 16 33 H 0.08 1.48 4.64 -51.93 -0.24 1.24 16 34 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 LS Contribution 284.05 15.07 4.28 4.28 Total: -1.00 -30.14 284.05 -5.96 -36.10 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.08 Total: 9.41 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -2.16 Total: 3.89 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.95 Total: -52.93 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.09 Total: -15.30 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.04 Total: 14.55 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.14 -5.96 -36.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712982468.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.761 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds