Wall clock time and date at job start Mon Mar 30 2020 04:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 120.00056 * 2 1 4 4 C 1.53000 * 109.46899 * 121.70699 * 3 2 1 5 5 C 1.50700 * 112.93864 * 48.55257 * 4 3 2 6 6 O 1.21294 * 120.00189 * 248.24952 * 5 4 3 7 7 N 1.34784 * 119.99889 * 68.24706 * 5 4 3 8 8 C 1.37097 * 119.99898 * 174.29692 * 7 5 4 9 9 H 1.07998 * 119.99968 * 346.05927 * 8 7 5 10 10 C 1.38952 * 119.99905 * 166.06550 * 8 7 5 11 11 N 1.31407 * 119.99728 * 1.33266 * 10 8 7 12 12 Si 1.86794 * 119.99927 * 181.33393 * 10 8 7 13 13 H 1.48497 * 109.47242 * 89.99959 * 12 10 8 14 14 H 1.48506 * 109.47064 * 210.00015 * 12 10 8 15 15 H 1.48506 * 109.47438 * 329.99802 * 12 10 8 16 16 C 1.46495 * 119.99780 * 354.29393 * 7 5 4 17 17 C 1.47202 * 109.47343 * 263.26499 * 16 7 5 18 18 N 3.65194 * 131.71396 * 259.54693 * 2 1 3 19 19 C 1.53936 * 113.73929 * 276.84610 * 4 3 2 20 20 N 1.47962 * 86.18199 * 221.92240 * 19 4 3 21 21 C 1.47965 * 90.76443 * 24.68769 * 20 19 4 22 22 H 1.07999 * 119.99598 * 359.72673 * 1 2 3 23 23 H 1.08001 * 119.99701 * 179.72252 * 1 2 3 24 24 H 1.07999 * 119.99598 * 180.27327 * 2 1 3 25 25 H 1.08996 * 109.47397 * 241.71006 * 3 2 1 26 26 H 1.09003 * 109.47153 * 1.71416 * 3 2 1 27 27 H 0.97006 * 120.00046 * 180.02562 * 11 10 8 28 28 H 1.08994 * 109.47395 * 23.26775 * 16 7 5 29 29 H 1.09009 * 109.47053 * 143.26673 * 16 7 5 30 30 H 1.09005 * 113.75420 * 336.24127 * 19 4 3 31 31 H 1.08994 * 113.75763 * 107.60106 * 19 4 3 32 32 H 1.00896 * 110.99929 * 271.79107 * 20 19 4 33 33 H 1.08990 * 113.75726 * 220.99604 * 21 20 19 34 34 H 1.08997 * 113.75554 * 89.62492 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9751 1.3676 1.2272 5 6 3.7978 0.1186 1.4121 6 8 3.5811 -0.6168 2.3521 7 7 4.7742 -0.1815 0.5328 8 6 5.5988 -1.2523 0.7632 9 1 5.6217 -1.7163 1.7381 10 6 6.4051 -1.7405 -0.2577 11 7 6.3968 -1.1596 -1.4363 12 14 7.5009 -3.2226 0.0454 13 1 6.7567 -4.4644 -0.2854 14 1 8.7104 -3.1274 -0.8110 15 1 7.9068 -3.2545 1.4735 16 6 4.9544 0.6366 -0.6690 17 6 4.2690 -0.0019 -1.8045 18 7 3.7401 -0.4946 -2.6808 19 6 2.2598 1.8362 2.5072 20 7 3.4715 2.6436 2.7702 21 6 3.7927 2.6682 1.3261 22 1 -0.5399 0.9353 0.0045 23 1 -0.5400 -0.9353 -0.0045 24 1 1.8500 -0.9353 -0.0045 25 1 2.6670 1.3762 -0.9049 26 1 1.3556 2.1333 0.0307 27 1 6.9594 -1.5006 -2.1492 28 1 4.5328 1.6275 -0.5007 29 1 6.0179 0.7271 -0.8908 30 1 1.3672 2.4325 2.3181 31 1 2.0954 1.0412 3.2345 32 1 4.1568 2.1104 3.2841 33 1 4.8530 2.5379 1.1098 34 1 3.3484 3.5078 0.7916 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722946118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:50 Heat of formation + Delta-G solvation = 70.921045 kcal Electronic energy + Delta-G solvation = -19094.714534 eV Core-core repulsion = 16223.539549 eV Total energy + Delta-G solvation = -2871.174985 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.66034 -37.51757 -35.83608 -34.42545 -34.20634 -31.91464 -29.16897 -27.49498 -25.75076 -25.26786 -23.87622 -21.63639 -19.46947 -18.37363 -18.05084 -16.73295 -15.99651 -15.73515 -15.05920 -14.62294 -14.44368 -14.17207 -13.36547 -13.26505 -13.16413 -12.80176 -12.47892 -12.27057 -11.88346 -11.58099 -11.51210 -11.28621 -11.23178 -11.06280 -10.65778 -10.51895 -10.47268 -10.38358 -10.12676 -9.36387 -9.11770 -8.73694 -8.22903 -8.20225 -6.52357 -4.13760 2.64296 3.02837 3.15577 3.19055 3.43197 3.70760 4.00519 4.12471 4.35559 4.53352 4.65080 4.86727 5.15169 5.28311 5.33183 5.50472 5.58103 5.70138 5.79559 5.80653 5.96298 6.01859 6.09264 6.17098 6.25599 6.31299 6.37308 6.72036 6.99784 7.11738 7.34223 7.51914 7.75561 8.17885 8.84254 8.89059 9.08490 9.59611 10.45228 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.009265 C = 0.008176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.301905 B = 3021.254496 C = 3423.842410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.129 4.129 3 C -0.081 4.081 4 C -0.140 4.140 5 C 0.475 3.525 6 O -0.570 6.570 7 N -0.440 5.440 8 C -0.301 4.301 9 H 0.109 0.891 10 C 0.029 3.971 11 N -0.892 5.892 12 Si 0.937 3.063 13 H -0.278 1.278 14 H -0.281 1.281 15 H -0.268 1.268 16 C 0.215 3.785 17 C 0.260 3.740 18 N -0.486 5.486 19 C 0.043 3.957 20 N -0.658 5.658 21 C 0.023 3.977 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.107 0.893 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.275 0.725 28 H 0.078 0.922 29 H 0.140 0.860 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.342 0.658 33 H 0.081 0.919 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 7.623 2.115 8.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.147 4.147 3 C -0.119 4.119 4 C -0.145 4.145 5 C 0.263 3.737 6 O -0.452 6.452 7 N -0.160 5.160 8 C -0.428 4.428 9 H 0.127 0.873 10 C -0.172 4.172 11 N -0.534 5.534 12 Si 0.764 3.236 13 H -0.204 1.204 14 H -0.207 1.207 15 H -0.193 1.193 16 C 0.088 3.912 17 C -0.058 4.058 18 N -0.167 5.167 19 C -0.087 4.087 20 N -0.285 5.285 21 C -0.107 4.107 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.125 0.875 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.158 0.842 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.100 0.900 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.275 7.266 1.371 8.541 hybrid contribution 1.135 -1.739 -0.222 2.088 sum -3.140 5.527 1.149 6.460 Atomic orbital electron populations 1.23649 0.95677 1.01172 1.03885 1.22904 0.96000 0.98575 0.97218 1.20882 0.97933 0.95949 0.97171 1.23705 0.97299 0.95659 0.97809 1.19329 0.81486 0.87406 0.85513 1.90555 1.68944 1.52018 1.33728 1.43569 1.27729 1.26974 1.17719 1.19839 1.16607 1.07399 0.98955 0.87343 1.25313 0.98511 0.98905 0.94445 1.69617 1.40252 1.40579 1.02920 0.85726 0.78711 0.80623 0.78545 1.20369 1.20675 1.19260 1.19193 1.02601 0.90100 0.79293 1.28973 0.90041 0.92801 0.93969 1.80896 1.14342 1.09349 1.12102 1.23542 0.94569 0.95701 0.94906 1.65058 1.06799 1.46821 1.09801 1.23877 1.00208 0.95311 0.91293 0.88930 0.88966 0.87494 0.90281 0.90781 0.91400 0.90463 0.84227 0.88683 0.89677 0.84365 0.90036 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.13 14.32 29.01 0.42 -2.72 16 2 C -0.13 -2.28 8.84 -36.03 -0.32 -2.60 16 3 C -0.08 -1.27 4.63 -27.88 -0.13 -1.40 16 4 C -0.14 -2.30 0.36 -154.72 -0.06 -2.36 16 5 C 0.47 10.13 5.07 -10.98 -0.06 10.08 16 6 O -0.57 -14.17 15.65 5.55 0.09 -14.09 16 7 N -0.44 -9.84 2.60 -117.93 -0.31 -10.15 16 8 C -0.30 -7.51 9.43 -14.93 -0.14 -7.66 16 9 H 0.11 2.85 7.29 -52.49 -0.38 2.47 16 10 C 0.03 0.71 5.36 -17.47 -0.09 0.62 16 11 N -0.89 -21.60 8.00 55.50 0.44 -21.15 16 12 Si 0.94 19.84 29.55 -169.99 -5.02 14.82 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 15 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 16 C 0.22 4.23 4.34 -6.83 -0.03 4.20 16 17 C 0.26 5.70 11.08 -20.76 -0.23 5.47 16 18 N -0.49 -11.49 18.54 42.15 0.78 -10.71 16 19 C 0.04 0.66 7.92 -2.76 -0.02 0.64 16 20 N -0.66 -9.80 8.55 -116.76 -1.00 -10.79 16 21 C 0.02 0.32 6.61 -2.76 -0.02 0.31 16 22 H 0.09 1.19 7.83 -52.49 -0.41 0.78 16 23 H 0.09 1.33 8.06 -52.49 -0.42 0.91 16 24 H 0.11 2.30 7.58 -52.49 -0.40 1.90 16 25 H 0.08 1.29 4.62 -51.93 -0.24 1.05 16 26 H 0.07 0.96 7.58 -51.93 -0.39 0.57 16 27 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 28 H 0.08 1.23 3.77 -51.93 -0.20 1.03 16 29 H 0.14 2.86 6.31 -51.92 -0.33 2.53 16 30 H 0.09 1.26 7.96 -51.93 -0.41 0.84 16 31 H 0.08 1.45 7.35 -51.93 -0.38 1.07 16 32 H 0.34 5.39 8.63 -39.29 -0.34 5.05 16 33 H 0.08 1.13 6.92 -51.93 -0.36 0.77 16 34 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 LS Contribution 282.51 15.07 4.26 4.26 Total: -1.00 -28.37 282.51 -5.26 -33.63 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -3.82 Total: 9.61 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -0.68 Total: 4.59 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.08 Total: -52.81 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.09 Total: -14.09 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.37 -5.26 -33.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722946118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.548 kcal (2) G-P(sol) polarization free energy of solvation -28.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds