Wall clock time and date at job start Mon Mar 30 2020 04:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 120.00056 * 2 1 4 4 C 1.53000 * 109.46899 * 121.70699 * 3 2 1 5 5 C 1.50700 * 112.93864 * 48.55257 * 4 3 2 6 6 O 1.21294 * 120.00189 * 248.24952 * 5 4 3 7 7 N 1.34784 * 119.99889 * 68.24706 * 5 4 3 8 8 C 1.37097 * 119.99898 * 174.29692 * 7 5 4 9 9 H 1.07998 * 119.99968 * 346.05927 * 8 7 5 10 10 C 1.38952 * 119.99905 * 166.06550 * 8 7 5 11 11 N 1.31407 * 119.99728 * 1.33266 * 10 8 7 12 12 Si 1.86794 * 119.99927 * 181.33393 * 10 8 7 13 13 H 1.48497 * 109.47242 * 89.99959 * 12 10 8 14 14 H 1.48506 * 109.47064 * 210.00015 * 12 10 8 15 15 H 1.48506 * 109.47438 * 329.99802 * 12 10 8 16 16 C 1.46495 * 119.99780 * 354.29393 * 7 5 4 17 17 C 1.47202 * 109.47343 * 263.26499 * 16 7 5 18 18 N 3.65194 * 131.71396 * 259.54693 * 2 1 3 19 19 C 1.53936 * 113.73929 * 276.84610 * 4 3 2 20 20 N 1.47962 * 86.18199 * 221.92240 * 19 4 3 21 21 C 1.47965 * 90.76443 * 24.68769 * 20 19 4 22 22 H 1.07999 * 119.99598 * 359.72673 * 1 2 3 23 23 H 1.08001 * 119.99701 * 179.72252 * 1 2 3 24 24 H 1.07999 * 119.99598 * 180.27327 * 2 1 3 25 25 H 1.08996 * 109.47397 * 241.71006 * 3 2 1 26 26 H 1.09003 * 109.47153 * 1.71416 * 3 2 1 27 27 H 0.97006 * 120.00046 * 180.02562 * 11 10 8 28 28 H 1.08994 * 109.47395 * 23.26775 * 16 7 5 29 29 H 1.09009 * 109.47053 * 143.26673 * 16 7 5 30 30 H 1.09005 * 113.75420 * 336.24127 * 19 4 3 31 31 H 1.08994 * 113.75763 * 107.60106 * 19 4 3 32 32 H 1.00896 * 110.99929 * 271.79107 * 20 19 4 33 33 H 1.08990 * 113.75726 * 220.99604 * 21 20 19 34 34 H 1.08997 * 113.75554 * 89.62492 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9751 1.3676 1.2272 5 6 3.7978 0.1186 1.4121 6 8 3.5811 -0.6168 2.3521 7 7 4.7742 -0.1815 0.5328 8 6 5.5988 -1.2523 0.7632 9 1 5.6217 -1.7163 1.7381 10 6 6.4051 -1.7405 -0.2577 11 7 6.3968 -1.1596 -1.4363 12 14 7.5009 -3.2226 0.0454 13 1 6.7567 -4.4644 -0.2854 14 1 8.7104 -3.1274 -0.8110 15 1 7.9068 -3.2545 1.4735 16 6 4.9544 0.6366 -0.6690 17 6 4.2690 -0.0019 -1.8045 18 7 3.7401 -0.4946 -2.6808 19 6 2.2598 1.8362 2.5072 20 7 3.4715 2.6436 2.7702 21 6 3.7927 2.6682 1.3261 22 1 -0.5399 0.9353 0.0045 23 1 -0.5400 -0.9353 -0.0045 24 1 1.8500 -0.9353 -0.0045 25 1 2.6670 1.3762 -0.9049 26 1 1.3556 2.1333 0.0307 27 1 6.9594 -1.5006 -2.1492 28 1 4.5328 1.6275 -0.5007 29 1 6.0179 0.7271 -0.8908 30 1 1.3672 2.4325 2.3181 31 1 2.0954 1.0412 3.2345 32 1 4.1568 2.1104 3.2841 33 1 4.8530 2.5379 1.1098 34 1 3.3484 3.5078 0.7916 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722946118.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:50 Heat of formation + Delta-G solvation = 50.488039 kcal Electronic energy + Delta-G solvation = -19095.600576 eV Core-core repulsion = 16223.539549 eV Total energy + Delta-G solvation = -2872.061027 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.07501 -39.06057 -37.61749 -36.11002 -35.60196 -33.73645 -30.50918 -29.15063 -27.11972 -26.79871 -25.15026 -23.14319 -20.73958 -19.93560 -19.83768 -18.27522 -17.61167 -17.16274 -16.50667 -16.23432 -15.88802 -15.79947 -14.82768 -14.79741 -14.50627 -14.35895 -13.90089 -13.73767 -13.46342 -13.23851 -13.04672 -12.99377 -12.74707 -12.39918 -12.35146 -12.15182 -12.11242 -11.90238 -11.37114 -11.18495 -10.55743 -10.26915 -10.05889 -9.42774 -8.37725 -6.05274 1.30891 1.37261 1.39561 1.49691 1.75818 2.01241 2.27266 2.39485 2.95666 3.01134 3.13606 3.37549 3.65761 3.79939 4.03337 4.15545 4.33469 4.43132 4.48137 4.66112 4.76948 4.77221 4.87797 4.95309 5.02975 5.07973 5.13975 5.20345 5.38842 5.69466 5.86858 5.94615 6.26692 6.34943 7.04871 7.10252 7.30466 7.84241 8.55614 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.009265 C = 0.008176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.301905 B = 3021.254496 C = 3423.842410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.164 4.164 3 C -0.073 4.073 4 C -0.143 4.143 5 C 0.475 3.525 6 O -0.614 6.614 7 N -0.453 5.453 8 C -0.327 4.327 9 H 0.084 0.916 10 C 0.001 3.999 11 N -0.899 5.899 12 Si 0.987 3.013 13 H -0.290 1.290 14 H -0.269 1.269 15 H -0.266 1.266 16 C 0.220 3.780 17 C 0.271 3.729 18 N -0.519 5.519 19 C 0.050 3.950 20 N -0.655 5.655 21 C 0.033 3.967 22 H 0.129 0.871 23 H 0.092 0.908 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.116 0.884 27 H 0.274 0.726 28 H 0.122 0.878 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.059 0.941 32 H 0.332 0.668 33 H 0.081 0.919 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.176 9.962 1.763 10.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.183 4.183 3 C -0.110 4.110 4 C -0.148 4.148 5 C 0.265 3.735 6 O -0.500 6.500 7 N -0.172 5.172 8 C -0.454 4.454 9 H 0.101 0.899 10 C -0.199 4.199 11 N -0.540 5.540 12 Si 0.812 3.188 13 H -0.217 1.217 14 H -0.193 1.193 15 H -0.190 1.190 16 C 0.094 3.906 17 C -0.046 4.046 18 N -0.201 5.201 19 C -0.081 4.081 20 N -0.281 5.281 21 C -0.097 4.097 22 H 0.147 0.853 23 H 0.110 0.890 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.134 0.866 27 H 0.085 0.915 28 H 0.139 0.861 29 H 0.152 0.848 30 H 0.147 0.853 31 H 0.077 0.923 32 H 0.145 0.855 33 H 0.099 0.901 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.153 9.632 1.003 10.969 hybrid contribution 1.311 -2.517 -0.066 2.839 sum -3.842 7.114 0.937 8.139 Atomic orbital electron populations 1.23934 0.94742 1.02940 1.00071 1.22760 0.96978 0.97651 1.00894 1.20890 0.98152 0.96061 0.95944 1.23710 0.97607 0.94164 0.99313 1.20251 0.80825 0.88430 0.84037 1.90519 1.70031 1.53995 1.35427 1.43696 1.27896 1.26911 1.18711 1.19720 1.18193 1.09080 0.98415 0.89852 1.25854 0.99199 1.00534 0.94273 1.69715 1.40380 1.40950 1.02941 0.84997 0.77616 0.77561 0.78665 1.21687 1.19315 1.18998 1.19364 1.02403 0.91250 0.77585 1.29420 0.89277 0.92074 0.93790 1.80884 1.15524 1.10335 1.13359 1.23626 0.95766 0.95405 0.93264 1.65142 1.06467 1.46142 1.10319 1.24075 1.00162 0.94641 0.90807 0.85257 0.88978 0.92772 0.91097 0.86578 0.91548 0.86095 0.84806 0.85331 0.92265 0.85450 0.90069 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.99 14.32 67.78 0.97 -4.02 16 2 C -0.16 -5.66 8.84 25.64 0.23 -5.44 16 3 C -0.07 -2.06 4.63 29.85 0.14 -1.92 16 4 C -0.14 -4.42 0.36 -52.28 -0.02 -4.44 16 5 C 0.47 20.50 5.07 87.66 0.44 20.95 16 6 O -0.61 -31.81 15.65 -3.07 -0.05 -31.86 16 7 N -0.45 -20.54 2.60 -645.41 -1.68 -22.23 16 8 C -0.33 -16.84 9.43 84.04 0.79 -16.04 16 9 H 0.08 4.63 7.29 -2.91 -0.02 4.61 16 10 C 0.00 0.07 5.36 84.93 0.46 0.52 16 11 N -0.90 -43.67 8.00 21.66 0.17 -43.50 16 12 Si 0.99 41.22 29.55 68.60 2.03 43.25 16 13 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 14 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 15 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 16 C 0.22 8.50 4.34 84.58 0.37 8.87 16 17 C 0.27 11.85 11.08 89.44 0.99 12.84 16 18 N -0.52 -24.61 18.54 20.01 0.37 -24.24 16 19 C 0.05 1.39 7.92 86.41 0.68 2.07 16 20 N -0.66 -17.80 8.55 -523.33 -4.48 -22.28 16 21 C 0.03 0.79 6.61 86.41 0.57 1.37 16 22 H 0.13 2.65 7.83 -2.91 -0.02 2.63 16 23 H 0.09 2.51 8.06 -2.91 -0.02 2.48 16 24 H 0.05 2.43 7.58 -2.91 -0.02 2.41 16 25 H 0.07 2.12 4.62 -2.39 -0.01 2.10 16 26 H 0.12 2.35 7.58 -2.39 -0.02 2.33 16 27 H 0.27 13.03 8.31 -92.70 -0.77 12.26 16 28 H 0.12 3.55 3.77 -2.39 -0.01 3.54 16 29 H 0.13 5.39 6.31 -2.38 -0.02 5.38 16 30 H 0.13 2.77 7.96 -2.38 -0.02 2.75 16 31 H 0.06 1.99 7.35 -2.39 -0.02 1.97 16 32 H 0.33 10.14 8.63 -89.70 -0.77 9.37 16 33 H 0.08 2.00 6.92 -2.39 -0.02 1.98 16 34 H 0.14 2.40 8.10 -2.39 -0.02 2.38 16 Total: -1.00 -64.29 282.51 2.35 -61.95 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.36 Total: 24.15 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 5.62 Total: 14.76 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -5.61 Total: -112.24 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.05 Total: -31.86 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -64.29 2.35 -61.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722946118.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.433 kcal (2) G-P(sol) polarization free energy of solvation -64.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds