Wall clock time and date at job start Mon Mar 30 2020 04:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.47335 * 2 1 4 4 C 1.36935 * 119.99913 * 83.22103 * 3 2 1 5 5 H 1.08006 * 120.00495 * 168.40488 * 4 3 2 6 6 C 1.38814 * 120.00088 * 348.40634 * 4 3 2 7 7 N 1.31620 * 120.00189 * 8.89631 * 6 4 3 8 8 Si 1.86807 * 119.99987 * 188.90249 * 6 4 3 9 9 H 1.48499 * 109.47084 * 89.99832 * 8 6 4 10 10 H 1.48500 * 109.46768 * 209.99679 * 8 6 4 11 11 H 1.48496 * 109.47001 * 329.99786 * 8 6 4 12 12 C 1.46494 * 120.00217 * 263.22275 * 3 2 1 13 13 C 1.53008 * 109.47197 * 264.41893 * 12 3 2 14 14 H 1.09007 * 109.46858 * 306.26517 * 13 12 3 15 15 O 1.42893 * 109.47180 * 66.26421 * 13 12 3 16 16 C 1.50698 * 109.47160 * 186.26847 * 13 12 3 17 17 C 1.38253 * 119.99762 * 264.97614 * 16 13 12 18 18 C 1.38221 * 120.00076 * 180.02562 * 17 16 13 19 19 C 1.38251 * 119.99798 * 359.97438 * 18 17 16 20 20 C 1.38218 * 120.00145 * 359.80950 * 19 18 17 21 21 C 1.38214 * 120.00141 * 84.99657 * 16 13 12 22 22 C 1.50697 * 119.99711 * 359.97438 * 21 16 13 23 23 H 1.09003 * 109.46860 * 307.33358 * 1 2 3 24 24 H 1.09002 * 109.47256 * 67.33389 * 1 2 3 25 25 H 1.09002 * 109.47398 * 187.33753 * 1 2 3 26 26 H 1.09004 * 109.47013 * 239.99861 * 2 1 3 27 27 H 1.09001 * 109.47047 * 120.00125 * 2 1 3 28 28 H 0.96994 * 120.00208 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47418 * 144.42031 * 12 3 2 30 30 H 1.08995 * 109.47146 * 24.41648 * 12 3 2 31 31 H 0.96706 * 114.00182 * 59.99876 * 15 13 12 32 32 H 1.08000 * 120.00567 * 359.97438 * 17 16 13 33 33 H 1.08001 * 120.00007 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.99978 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.00215 * 180.23115 * 20 19 18 36 36 H 1.08991 * 109.47591 * 89.99800 * 22 21 16 37 37 H 1.09001 * 109.47163 * 329.99238 * 22 21 16 38 38 H 1.09003 * 109.46662 * 209.99699 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1146 2.0733 1.1776 5 1 2.6441 3.0141 1.2094 6 6 1.5317 1.5658 2.3307 7 7 1.0403 0.3447 2.3371 8 14 1.4445 2.6158 3.8732 9 1 0.1784 3.3919 3.8727 10 1 1.4875 1.7397 5.0714 11 1 2.5980 3.5505 3.9016 12 6 2.4037 2.0219 -1.2598 13 6 3.9147 1.8870 -1.4593 14 1 4.4329 2.2702 -0.5802 15 8 4.2493 0.5105 -1.6471 16 6 4.3335 2.6759 -2.6730 17 6 4.4490 2.0483 -3.8994 18 6 4.8336 2.7718 -5.0126 19 6 5.1025 4.1232 -4.8996 20 6 4.9827 4.7516 -3.6744 21 6 4.6027 4.0269 -2.5600 22 6 4.4767 4.7110 -1.2232 23 1 -0.3633 0.6233 0.8172 24 1 -0.3634 0.3960 -0.9483 25 1 -0.3634 -1.0193 0.1312 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.6327 -0.0098 3.1427 29 1 2.1343 3.0776 -1.2278 30 1 1.8835 1.5390 -2.0870 31 1 3.8228 0.1030 -2.4134 32 1 4.2394 0.9925 -3.9877 33 1 4.9242 2.2813 -5.9705 34 1 5.4034 4.6884 -5.7693 35 1 5.1891 5.8081 -3.5869 36 1 5.4311 4.6628 -0.6990 37 1 3.7107 4.2113 -0.6301 38 1 4.1970 5.7537 -1.3736 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159736460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:34 Heat of formation + Delta-G solvation = 1.709245 kcal Electronic energy + Delta-G solvation = -18717.394774 eV Core-core repulsion = 15946.758884 eV Total energy + Delta-G solvation = -2770.635891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.64146 -36.92639 -35.20045 -32.90877 -31.34814 -30.78871 -29.41149 -27.21259 -26.45640 -24.17125 -22.53729 -21.46522 -20.49458 -20.07556 -17.13468 -16.60848 -15.60393 -15.34143 -14.82770 -14.72968 -13.79128 -13.77034 -13.64814 -13.28557 -12.96741 -12.74239 -12.04247 -11.97832 -11.88562 -11.65240 -11.28312 -11.19224 -10.92201 -10.80619 -10.61769 -10.48665 -10.37833 -9.87578 -9.77528 -9.58418 -9.30751 -8.64909 -8.41487 -8.23288 -6.71940 -5.56500 -3.07087 1.51951 1.54469 3.40198 3.46095 3.47566 3.90424 4.50193 4.95552 4.95914 5.04879 5.10238 5.16600 5.43007 5.48433 5.60745 5.76461 5.81593 5.87055 5.95106 6.04614 6.09344 6.19039 6.35421 6.51487 6.62621 6.66160 6.71865 6.72135 6.95777 7.08425 7.16619 7.18470 7.34147 7.68941 8.02411 8.16456 8.20027 8.55703 9.33502 9.93733 10.36875 11.34030 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027968 B = 0.006561 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.907787 B = 4266.495377 C = 4958.374532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.169 3.831 3 N -0.593 5.593 4 C -0.241 4.241 5 H 0.072 0.928 6 C -0.006 4.006 7 N -0.904 5.904 8 Si 0.905 3.095 9 H -0.290 1.290 10 H -0.292 1.292 11 H -0.282 1.282 12 C 0.132 3.868 13 C 0.117 3.883 14 H 0.108 0.892 15 O -0.547 6.547 16 C -0.101 4.101 17 C -0.114 4.114 18 C -0.126 4.126 19 C -0.130 4.130 20 C -0.121 4.121 21 C -0.077 4.077 22 C -0.126 4.126 23 H 0.078 0.922 24 H -0.003 1.003 25 H 0.021 0.979 26 H -0.002 1.002 27 H 0.105 0.895 28 H 0.248 0.752 29 H 0.051 0.949 30 H 0.043 0.957 31 H 0.359 0.641 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.622 5.227 -11.806 14.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.044 3.956 3 N -0.313 5.313 4 C -0.370 4.370 5 H 0.089 0.911 6 C -0.202 4.202 7 N -0.552 5.552 8 Si 0.736 3.264 9 H -0.217 1.217 10 H -0.218 1.218 11 H -0.208 1.208 12 C 0.003 3.997 13 C 0.055 3.945 14 H 0.125 0.875 15 O -0.351 6.351 16 C -0.102 4.102 17 C -0.133 4.133 18 C -0.144 4.144 19 C -0.148 4.148 20 C -0.140 4.140 21 C -0.077 4.077 22 C -0.182 4.182 23 H 0.096 0.904 24 H 0.016 0.984 25 H 0.040 0.960 26 H 0.016 0.984 27 H 0.123 0.877 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.206 0.794 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.880 5.236 -11.074 13.588 hybrid contribution -0.422 0.539 0.155 0.702 sum 5.458 5.776 -10.919 13.504 Atomic orbital electron populations 1.22354 0.99755 0.98894 0.98347 1.21043 0.91836 0.84075 0.98618 1.44083 1.74582 1.11508 1.01150 1.19275 1.28237 1.02731 0.86785 0.91060 1.24830 1.00243 0.96915 0.98224 1.70194 1.44299 1.13942 1.26763 0.86222 0.77744 0.79495 0.82935 1.21702 1.21835 1.20767 1.21333 0.91102 0.97561 0.89716 1.21948 0.99241 0.80052 0.93259 0.87452 1.86661 1.72566 1.24194 1.51661 1.20826 0.98382 0.94430 0.96601 1.20878 1.00348 0.99749 0.92281 1.21029 1.00729 0.94425 0.98249 1.21024 1.01525 0.94940 0.97331 1.20992 1.00918 0.99493 0.92551 1.19763 0.98731 0.93372 0.95870 1.20950 1.03093 1.00132 0.94023 0.90361 0.98381 0.96041 0.98411 0.87732 0.94026 0.93116 0.93856 0.79426 0.86298 0.86533 0.86618 0.86445 0.91207 0.89932 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.31 37.16 0.35 -2.88 16 2 C 0.17 4.17 5.68 -4.05 -0.02 4.15 16 3 N -0.59 -14.55 2.52 -173.24 -0.44 -14.98 16 4 C -0.24 -6.40 9.75 -15.06 -0.15 -6.55 16 5 H 0.07 1.83 7.84 -52.48 -0.41 1.41 16 6 C -0.01 -0.17 5.07 -17.43 -0.09 -0.26 16 7 N -0.90 -25.23 7.51 55.49 0.42 -24.81 16 8 Si 0.91 21.60 29.56 -169.99 -5.03 16.57 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 C 0.13 2.67 5.00 -4.04 -0.02 2.65 16 13 C 0.12 2.15 2.72 -27.88 -0.08 2.08 16 14 H 0.11 2.20 6.99 -51.92 -0.36 1.83 16 15 O -0.55 -10.27 12.77 -35.23 -0.45 -10.72 16 16 C -0.10 -1.60 5.06 -104.63 -0.53 -2.13 16 17 C -0.11 -1.61 9.30 -39.58 -0.37 -1.97 16 18 C -0.13 -1.57 10.05 -39.58 -0.40 -1.96 16 19 C -0.13 -1.57 10.05 -39.58 -0.40 -1.96 16 20 C -0.12 -1.57 9.70 -39.58 -0.38 -1.95 16 21 C -0.08 -1.14 5.88 -104.62 -0.62 -1.76 16 22 C -0.13 -1.76 9.22 36.00 0.33 -1.43 16 23 H 0.08 2.11 6.13 -51.93 -0.32 1.79 16 24 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 27 H 0.11 2.93 5.85 -51.93 -0.30 2.62 16 28 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.05 1.02 7.00 -51.93 -0.36 0.66 16 30 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 31 H 0.36 5.46 7.33 45.56 0.33 5.79 16 32 H 0.12 1.47 6.41 -52.49 -0.34 1.14 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.33 5.51 -51.93 -0.29 1.04 16 38 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -29.15 304.39 -8.24 -37.39 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.96 Total: 5.96 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.37 Total: -13.99 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: -0.02 Total: -39.80 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.45 Total: -10.72 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.15 -8.24 -37.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159736460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.098 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds