Wall clock time and date at job start Mon Mar 30 2020 04:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.47335 * 2 1 4 4 C 1.36935 * 119.99913 * 83.22103 * 3 2 1 5 5 H 1.08006 * 120.00495 * 168.40488 * 4 3 2 6 6 C 1.38814 * 120.00088 * 348.40634 * 4 3 2 7 7 N 1.31620 * 120.00189 * 8.89631 * 6 4 3 8 8 Si 1.86807 * 119.99987 * 188.90249 * 6 4 3 9 9 H 1.48499 * 109.47084 * 89.99832 * 8 6 4 10 10 H 1.48500 * 109.46768 * 209.99679 * 8 6 4 11 11 H 1.48496 * 109.47001 * 329.99786 * 8 6 4 12 12 C 1.46494 * 120.00217 * 263.22275 * 3 2 1 13 13 C 1.53008 * 109.47197 * 264.41893 * 12 3 2 14 14 H 1.09007 * 109.46858 * 306.26517 * 13 12 3 15 15 O 1.42893 * 109.47180 * 66.26421 * 13 12 3 16 16 C 1.50698 * 109.47160 * 186.26847 * 13 12 3 17 17 C 1.38253 * 119.99762 * 264.97614 * 16 13 12 18 18 C 1.38221 * 120.00076 * 180.02562 * 17 16 13 19 19 C 1.38251 * 119.99798 * 359.97438 * 18 17 16 20 20 C 1.38218 * 120.00145 * 359.80950 * 19 18 17 21 21 C 1.38214 * 120.00141 * 84.99657 * 16 13 12 22 22 C 1.50697 * 119.99711 * 359.97438 * 21 16 13 23 23 H 1.09003 * 109.46860 * 307.33358 * 1 2 3 24 24 H 1.09002 * 109.47256 * 67.33389 * 1 2 3 25 25 H 1.09002 * 109.47398 * 187.33753 * 1 2 3 26 26 H 1.09004 * 109.47013 * 239.99861 * 2 1 3 27 27 H 1.09001 * 109.47047 * 120.00125 * 2 1 3 28 28 H 0.96994 * 120.00208 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47418 * 144.42031 * 12 3 2 30 30 H 1.08995 * 109.47146 * 24.41648 * 12 3 2 31 31 H 0.96706 * 114.00182 * 59.99876 * 15 13 12 32 32 H 1.08000 * 120.00567 * 359.97438 * 17 16 13 33 33 H 1.08001 * 120.00007 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.99978 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.00215 * 180.23115 * 20 19 18 36 36 H 1.08991 * 109.47591 * 89.99800 * 22 21 16 37 37 H 1.09001 * 109.47163 * 329.99238 * 22 21 16 38 38 H 1.09003 * 109.46662 * 209.99699 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1146 2.0733 1.1776 5 1 2.6441 3.0141 1.2094 6 6 1.5317 1.5658 2.3307 7 7 1.0403 0.3447 2.3371 8 14 1.4445 2.6158 3.8732 9 1 0.1784 3.3919 3.8727 10 1 1.4875 1.7397 5.0714 11 1 2.5980 3.5505 3.9016 12 6 2.4037 2.0219 -1.2598 13 6 3.9147 1.8870 -1.4593 14 1 4.4329 2.2702 -0.5802 15 8 4.2493 0.5105 -1.6471 16 6 4.3335 2.6759 -2.6730 17 6 4.4490 2.0483 -3.8994 18 6 4.8336 2.7718 -5.0126 19 6 5.1025 4.1232 -4.8996 20 6 4.9827 4.7516 -3.6744 21 6 4.6027 4.0269 -2.5600 22 6 4.4767 4.7110 -1.2232 23 1 -0.3633 0.6233 0.8172 24 1 -0.3634 0.3960 -0.9483 25 1 -0.3634 -1.0193 0.1312 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.6327 -0.0098 3.1427 29 1 2.1343 3.0776 -1.2278 30 1 1.8835 1.5390 -2.0870 31 1 3.8228 0.1030 -2.4134 32 1 4.2394 0.9925 -3.9877 33 1 4.9242 2.2813 -5.9705 34 1 5.4034 4.6884 -5.7693 35 1 5.1891 5.8081 -3.5869 36 1 5.4311 4.6628 -0.6990 37 1 3.7107 4.2113 -0.6301 38 1 4.1970 5.7537 -1.3736 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159736460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:34 Heat of formation + Delta-G solvation = -15.077771 kcal Electronic energy + Delta-G solvation = -18718.122714 eV Core-core repulsion = 15946.758884 eV Total energy + Delta-G solvation = -2771.363830 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.79878 -38.44507 -36.93208 -34.06126 -33.08526 -32.14764 -31.19592 -28.73179 -27.67112 -25.93027 -24.14394 -22.64045 -22.02928 -21.58669 -18.80233 -18.11183 -17.01248 -16.85248 -16.36190 -15.92094 -15.43794 -15.34208 -14.98253 -14.63354 -14.41511 -13.92698 -13.78046 -13.47752 -13.16635 -13.09487 -12.94818 -12.72819 -12.53478 -12.43513 -12.38170 -11.94376 -11.85719 -11.70857 -11.51815 -11.47770 -11.00630 -10.30692 -9.68121 -9.46635 -8.64665 -7.61267 -5.12250 0.46968 0.52873 1.49079 1.50108 1.57506 2.54562 2.86686 3.38292 3.57534 3.65281 3.98432 4.03488 4.11407 4.22733 4.35500 4.46775 4.53849 4.66431 4.77103 4.77986 4.83710 4.89469 5.02830 5.05088 5.15046 5.23361 5.26284 5.34742 5.38979 5.62475 5.63833 5.65139 5.80987 5.98516 6.16341 6.18020 6.51784 6.89277 7.28860 7.98963 8.37495 9.27594 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027968 B = 0.006561 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.907787 B = 4266.495377 C = 4958.374532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.173 3.827 3 N -0.608 5.608 4 C -0.248 4.248 5 H 0.073 0.927 6 C -0.057 4.057 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.290 1.290 10 H -0.298 1.298 11 H -0.273 1.273 12 C 0.135 3.865 13 C 0.135 3.865 14 H 0.078 0.922 15 O -0.564 6.564 16 C -0.124 4.124 17 C -0.123 4.123 18 C -0.127 4.127 19 C -0.124 4.124 20 C -0.126 4.126 21 C -0.093 4.093 22 C -0.122 4.122 23 H 0.047 0.953 24 H 0.012 0.988 25 H 0.030 0.970 26 H 0.016 0.984 27 H 0.071 0.929 28 H 0.241 0.759 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.375 0.625 32 H 0.130 0.870 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 6.443 -14.066 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 N -0.330 5.330 4 C -0.378 4.378 5 H 0.091 0.909 6 C -0.251 4.251 7 N -0.573 5.573 8 Si 0.792 3.208 9 H -0.217 1.217 10 H -0.225 1.225 11 H -0.199 1.199 12 C 0.008 3.992 13 C 0.073 3.927 14 H 0.096 0.904 15 O -0.371 6.371 16 C -0.125 4.125 17 C -0.141 4.141 18 C -0.145 4.145 19 C -0.142 4.142 20 C -0.144 4.144 21 C -0.094 4.094 22 C -0.179 4.179 23 H 0.066 0.934 24 H 0.031 0.969 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.224 0.776 32 H 0.148 0.852 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.666 6.470 -13.375 16.285 hybrid contribution -0.595 0.184 0.719 0.951 sum 6.071 6.654 -12.656 15.534 Atomic orbital electron populations 1.22153 0.99271 0.98839 0.97719 1.20834 0.92194 0.84334 0.97781 1.44224 1.75209 1.11501 1.02022 1.19547 1.27647 1.02795 0.87763 0.90894 1.25489 1.00809 0.97987 1.00776 1.70402 1.45169 1.14945 1.26792 0.85316 0.77709 0.78059 0.79680 1.21731 1.22495 1.19853 1.21432 0.92546 0.97084 0.88174 1.21432 0.97071 0.80297 0.93862 0.90372 1.86609 1.72976 1.24626 1.52856 1.20591 1.00990 0.94838 0.96116 1.21099 1.00285 1.00574 0.92113 1.21400 0.99533 0.94763 0.98818 1.21469 0.99686 0.95059 0.97993 1.21290 1.00219 1.00640 0.92204 1.19930 0.99440 0.93263 0.96727 1.20901 1.02289 1.00952 0.93733 0.93442 0.96943 0.95132 0.96548 0.91154 0.94847 0.93350 0.92776 0.77643 0.85200 0.83667 0.83417 0.84154 0.91047 0.92678 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 9.31 71.98 0.67 -5.13 16 2 C 0.17 8.66 5.68 86.38 0.49 9.15 16 3 N -0.61 -30.24 2.52 -702.01 -1.77 -32.00 16 4 C -0.25 -13.41 9.75 84.03 0.82 -12.59 16 5 H 0.07 3.82 7.84 -2.91 -0.02 3.80 16 6 C -0.06 -3.16 5.07 84.86 0.43 -2.73 16 7 N -0.92 -52.95 7.51 21.65 0.16 -52.79 16 8 Si 0.96 45.24 29.56 68.60 2.03 47.27 16 9 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 10 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 12 C 0.13 5.46 5.00 86.38 0.43 5.89 16 13 C 0.14 5.00 2.72 29.85 0.08 5.08 16 14 H 0.08 3.32 6.99 -2.38 -0.02 3.30 16 15 O -0.56 -21.06 12.77 -148.98 -1.90 -22.96 16 16 C -0.12 -3.81 5.06 -19.87 -0.10 -3.91 16 17 C -0.12 -3.17 9.30 22.27 0.21 -2.96 16 18 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 19 C -0.12 -2.49 10.05 22.27 0.22 -2.26 16 20 C -0.13 -2.86 9.70 22.27 0.22 -2.65 16 21 C -0.09 -2.64 5.88 -19.87 -0.12 -2.75 16 22 C -0.12 -3.38 9.22 71.24 0.66 -2.73 16 23 H 0.05 2.58 6.13 -2.39 -0.01 2.57 16 24 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.02 0.74 7.84 -2.38 -0.02 0.72 16 27 H 0.07 4.04 5.85 -2.39 -0.01 4.03 16 28 H 0.24 13.62 8.31 -92.71 -0.77 12.85 16 29 H 0.05 1.97 7.00 -2.39 -0.02 1.95 16 30 H 0.05 2.04 8.03 -2.39 -0.02 2.02 16 31 H 0.37 11.00 7.33 -74.05 -0.54 10.46 16 32 H 0.13 2.94 6.41 -2.91 -0.02 2.92 16 33 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.82 5.51 -2.39 -0.01 1.80 16 38 H 0.08 1.91 8.08 -2.39 -0.02 1.89 16 Total: -1.00 -63.08 304.39 3.26 -59.83 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.51 Total: 20.73 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 4.23 Total: -20.07 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -1.61 Total: -84.79 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -1.90 Total: -22.96 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -63.08 3.26 -59.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159736460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.749 kcal (2) G-P(sol) polarization free energy of solvation -63.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds