Wall clock time and date at job start Mon Mar 30 2020 03:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99945 * 2 1 4 4 H 1.48503 * 109.46717 * 269.99961 * 3 2 1 5 5 H 1.48492 * 109.47175 * 29.99724 * 3 2 1 6 6 H 1.48502 * 109.47448 * 150.00020 * 3 2 1 7 7 C 1.37881 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99527 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00104 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47086 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47483 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47439 * 180.02562 * 11 10 9 13 13 C 1.46897 * 111.00179 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47298 * 180.02562 * 13 12 11 15 15 C 1.38264 * 119.99747 * 270.02274 * 14 13 12 16 16 C 1.38205 * 119.99484 * 179.97438 * 15 14 13 17 17 C 1.38262 * 120.00498 * 359.81306 * 16 15 14 18 18 C 1.38217 * 119.99351 * 0.42077 * 17 16 15 19 19 C 1.50699 * 119.99610 * 179.81235 * 18 17 16 20 20 O 1.42903 * 109.47152 * 269.72650 * 19 18 17 21 21 C 1.38205 * 119.99984 * 90.00256 * 14 13 12 22 22 H 0.97004 * 119.99932 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46939 * 60.00858 * 9 7 2 24 24 H 1.08994 * 109.47318 * 300.00833 * 9 7 2 25 25 H 1.09003 * 109.47089 * 60.00421 * 10 9 7 26 26 H 1.09000 * 109.47283 * 300.00348 * 10 9 7 27 27 H 1.09003 * 109.46880 * 59.99967 * 11 10 9 28 28 H 1.09000 * 109.46880 * 300.00270 * 11 10 9 29 29 H 1.00895 * 110.99815 * 303.95246 * 12 11 10 30 30 H 1.09003 * 109.46778 * 59.99869 * 13 12 11 31 31 H 1.09004 * 109.47334 * 300.00411 * 13 12 11 32 32 H 1.07992 * 119.99832 * 359.97438 * 15 14 13 33 33 H 1.08001 * 119.99707 * 180.02562 * 16 15 14 34 34 H 1.07994 * 120.00185 * 180.22639 * 17 16 15 35 35 H 1.08997 * 109.47198 * 149.72328 * 19 18 17 36 36 H 1.09008 * 109.47393 * 29.72044 * 19 18 17 37 37 H 0.96700 * 114.00311 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.00366 * 359.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5516 -2.6365 0.0001 12 7 6.0413 -4.0215 -0.0004 13 6 7.5097 -4.0607 -0.0009 14 6 7.9740 -5.4943 -0.0021 15 6 8.1870 -6.1529 1.1948 16 6 8.6122 -7.4679 1.1937 17 6 8.8210 -8.1261 -0.0042 18 6 8.6127 -7.4661 -1.2006 19 6 8.8444 -8.1821 -2.5062 20 8 10.1992 -7.9930 -2.9194 21 6 8.1865 -6.1509 -1.1995 22 1 -0.4850 0.8401 -0.0004 23 1 3.8752 -0.6797 0.8896 24 1 3.8745 -0.6806 -0.8904 25 1 3.6580 -3.1505 -0.8897 26 1 3.6586 -3.1501 0.8903 27 1 5.9149 -2.1226 0.8901 28 1 5.9149 -2.1227 -0.8899 29 1 5.6658 -4.5380 0.7808 30 1 7.8869 -3.5569 0.8890 31 1 7.8863 -3.5564 -0.8909 32 1 8.0210 -5.6398 2.1304 33 1 8.7782 -7.9825 2.1286 34 1 9.1498 -9.1547 -0.0050 35 1 8.1735 -7.7797 -3.2653 36 1 8.6493 -9.2467 -2.3765 37 1 10.4200 -8.4272 -3.7548 38 1 8.0194 -5.6367 -2.1345 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227467429.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:36 Heat of formation + Delta-G solvation = -42.416291 kcal Electronic energy + Delta-G solvation = -16882.490296 eV Core-core repulsion = 14109.940979 eV Total energy + Delta-G solvation = -2772.549318 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.73024 -37.14220 -36.28211 -33.77750 -32.21985 -31.64621 -30.57571 -27.12924 -26.20050 -24.64952 -22.21763 -22.02137 -20.73361 -19.94549 -17.74775 -16.86587 -16.61462 -16.12198 -15.50289 -15.14045 -14.67564 -14.18101 -14.12669 -13.96593 -13.70912 -13.13901 -12.83035 -12.57472 -12.37389 -12.26679 -11.81025 -11.59865 -11.11377 -11.09907 -10.91535 -10.77296 -10.38786 -9.94474 -9.71734 -9.60440 -9.15626 -8.99989 -8.88324 -8.51603 -8.23580 -6.01909 -3.99602 1.11323 1.25977 3.32187 3.39251 3.43008 3.47212 4.15747 4.46679 4.47211 4.59198 4.72632 4.82673 4.95066 5.01007 5.10064 5.24801 5.31749 5.32397 5.52540 5.54057 5.69732 5.77521 5.89101 5.92909 6.17992 6.28790 6.38342 6.49986 6.55649 6.58101 6.83469 6.93639 7.19572 7.27745 7.36254 7.45544 7.56353 7.82669 8.57504 9.03792 9.60730 11.11713 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.039742 B = 0.003112 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.383961 B = 8995.957546 C = 9149.218510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.056 3.944 12 N -0.685 5.685 13 C 0.095 3.905 14 C -0.079 4.079 15 C -0.108 4.108 16 C -0.124 4.124 17 C -0.103 4.103 18 C -0.098 4.098 19 C 0.117 3.883 20 O -0.569 6.569 21 C -0.076 4.076 22 H 0.262 0.738 23 H 0.013 0.987 24 H 0.011 0.989 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.025 0.975 28 H 0.067 0.933 29 H 0.340 0.660 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.379 0.621 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.664 -16.041 -1.626 26.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.072 4.072 12 N -0.316 5.316 13 C -0.033 4.033 14 C -0.080 4.080 15 C -0.127 4.127 16 C -0.142 4.142 17 C -0.121 4.121 18 C -0.098 4.098 19 C 0.040 3.960 20 O -0.374 6.374 21 C -0.095 4.095 22 H 0.072 0.928 23 H 0.032 0.968 24 H 0.030 0.970 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.158 0.842 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.226 0.774 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 20.471 -15.625 -1.754 25.812 hybrid contribution 0.434 0.838 0.433 1.038 sum 20.905 -14.787 -1.321 25.640 Atomic orbital electron populations 1.69920 1.06308 1.26829 1.51370 1.25048 0.94739 0.99188 0.94647 0.86759 0.80304 0.83602 0.78486 1.20293 1.21443 1.19084 1.21160 0.89545 0.94467 1.50517 0.91024 1.19542 0.97148 0.92272 0.96110 1.21444 0.91013 0.99663 1.01614 1.22183 0.97705 0.87429 0.99933 1.60569 1.05703 1.15145 1.50182 1.20895 0.89297 0.91856 1.01291 1.19841 0.98934 0.96181 0.93014 1.21119 0.99040 0.94849 0.97645 1.21078 1.00394 0.94855 0.97893 1.20997 0.99346 0.99791 0.91986 1.19584 1.01331 0.94758 0.94096 1.20987 0.83532 0.98113 0.93370 1.86569 1.28270 1.78310 1.44301 1.20929 0.97167 0.93366 0.98026 0.92780 0.96846 0.97043 0.91930 0.93018 0.95702 0.91407 0.84220 0.94519 0.90259 0.86131 0.85962 0.86247 0.92521 0.92820 0.77399 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.37 13.96 55.43 0.77 -27.60 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -15.11 9.66 -34.44 -0.33 -15.45 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 10 C -0.10 -2.00 5.41 -26.73 -0.14 -2.15 16 11 C 0.06 0.92 5.69 -3.83 -0.02 0.90 16 12 N -0.69 -9.87 6.49 -115.06 -0.75 -10.61 16 13 C 0.10 1.17 5.81 -4.98 -0.03 1.15 16 14 C -0.08 -0.94 5.39 -104.63 -0.56 -1.50 16 15 C -0.11 -1.16 9.70 -39.58 -0.38 -1.54 16 16 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 17 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 18 C -0.10 -1.06 5.51 -104.62 -0.58 -1.64 16 19 C 0.12 0.99 7.17 36.01 0.26 1.25 16 20 O -0.57 -5.07 13.64 -35.23 -0.48 -5.55 16 21 C -0.08 -0.90 9.36 -39.59 -0.37 -1.27 16 22 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 23 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 24 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.34 4.70 8.72 -39.29 -0.34 4.36 16 30 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 32 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.05 0.36 8.08 -51.92 -0.42 -0.06 16 37 H 0.38 1.45 9.12 45.56 0.42 1.87 16 38 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 321.33 15.07 4.84 4.84 Total: -1.00 -33.23 321.33 -8.78 -42.01 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.34 Total: 1.44 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -3.16 Total: -21.90 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.03 Total: -38.21 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.48 Total: -5.55 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.23 -8.78 -42.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227467429.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.408 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds