Wall clock time and date at job start Mon Mar 30 2020 04:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.47152 * 2 1 4 4 C 1.38289 * 119.94211 * 270.02113 * 3 2 1 5 5 C 1.38132 * 120.05426 * 179.74593 * 4 3 2 6 6 C 1.38754 * 119.94111 * 0.50680 * 5 4 3 7 7 O 1.35897 * 120.05516 * 179.74499 * 6 5 4 8 8 C 1.42905 * 117.00093 * 359.72833 * 7 6 5 9 9 C 1.38707 * 119.89014 * 359.47229 * 6 5 4 10 10 C 1.50696 * 120.02959 * 180.29464 * 9 6 5 11 11 C 1.53005 * 109.47254 * 85.00189 * 10 9 6 12 12 N 1.46499 * 109.47248 * 179.97438 * 11 10 9 13 13 C 1.36935 * 119.99747 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00641 * 0.02562 * 13 12 11 15 15 C 1.38815 * 119.99760 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00093 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99967 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46677 * 60.00292 * 17 15 13 19 19 H 1.48500 * 109.46833 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47127 * 300.00443 * 17 15 13 21 21 C 1.38169 * 119.94386 * 0.27509 * 9 6 5 22 22 H 1.09008 * 109.47337 * 300.00160 * 1 2 3 23 23 H 1.09005 * 109.47351 * 60.00074 * 1 2 3 24 24 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47098 * 240.00123 * 2 1 3 26 26 H 1.08996 * 109.47601 * 119.99975 * 2 1 3 27 27 H 1.07996 * 119.97449 * 0.02562 * 4 3 2 28 28 H 1.08000 * 120.02552 * 180.28168 * 5 4 3 29 29 H 1.09001 * 109.47103 * 300.00408 * 8 7 6 30 30 H 1.09004 * 109.47054 * 59.99912 * 8 7 6 31 31 H 1.09000 * 109.47187 * 179.97438 * 8 7 6 32 32 H 1.09008 * 109.47325 * 205.00214 * 10 9 6 33 33 H 1.08998 * 109.47382 * 325.00338 * 10 9 6 34 34 H 1.08995 * 109.46751 * 300.00305 * 11 10 9 35 35 H 1.08998 * 109.46804 * 59.99796 * 11 10 9 36 36 H 0.96999 * 119.99867 * 0.02562 * 12 11 10 37 37 H 0.96999 * 120.00200 * 179.97438 * 16 15 13 38 38 H 1.08005 * 119.97041 * 179.97438 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0717 -1.1983 5 6 2.7174 3.3758 -1.2010 6 6 2.9544 4.0291 -0.0001 7 8 3.4075 5.3103 0.0000 8 6 3.6237 5.9220 -1.2733 9 6 2.7229 3.3741 1.2005 10 6 2.9729 4.0829 2.5067 11 6 1.7389 4.9041 2.8858 12 7 1.9818 5.5926 4.1559 13 6 1.0114 6.3928 4.6974 14 1 0.0669 6.5161 4.1884 15 6 1.2417 7.0456 5.9006 16 7 2.3930 6.8958 6.5207 17 14 -0.0817 8.1378 6.6389 18 1 -1.3020 7.3318 6.8960 19 1 0.4088 8.7154 7.9160 20 1 -0.4036 9.2349 5.6913 21 6 2.2623 2.0714 1.1978 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.0808 1.5616 -2.1328 28 1 2.8922 3.8852 -2.1371 29 1 4.3651 5.3492 -1.8304 30 1 2.6870 5.9426 -1.8303 31 1 3.9835 6.9409 -1.1305 32 1 3.1739 3.3479 3.2863 33 1 3.8321 4.7454 2.4019 34 1 1.5380 5.6389 2.1063 35 1 0.8798 4.2415 2.9906 36 1 2.8302 5.4822 4.6129 37 1 2.5541 7.3523 7.3613 38 1 2.0822 1.5609 2.1324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258669482.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:34 Heat of formation + Delta-G solvation = -39.594608 kcal Electronic energy + Delta-G solvation = -17758.155403 eV Core-core repulsion = 14985.728443 eV Total energy + Delta-G solvation = -2772.426960 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.25660 -38.73250 -37.11770 -34.99916 -33.83597 -32.39838 -30.04478 -29.17896 -27.91924 -25.84458 -24.40184 -23.55420 -22.57311 -21.09531 -19.25885 -18.75839 -17.46637 -16.86254 -16.51662 -16.12516 -15.38125 -15.37115 -15.29169 -15.22545 -14.92469 -14.25178 -14.12224 -13.81814 -13.46153 -13.07205 -12.93359 -12.82533 -12.75190 -12.50224 -12.30146 -12.13824 -11.94132 -11.83575 -11.72444 -11.68415 -11.45236 -10.94796 -9.75390 -9.03918 -8.90439 -7.96243 -5.26740 0.40136 0.50119 1.45716 1.50213 1.56541 2.47672 2.55014 2.78812 3.36367 3.70316 3.85653 3.94879 4.13026 4.25972 4.29671 4.39278 4.40042 4.46470 4.51629 4.55976 4.61894 4.66626 4.72457 4.76156 4.90313 5.04188 5.10915 5.16087 5.18124 5.29735 5.42512 5.43508 5.46509 5.58366 5.75487 5.94851 6.25218 6.54917 7.30956 8.04756 8.31294 9.27318 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.004923 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.115587 B = 5685.885008 C = 6467.099648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.121 4.121 4 C -0.083 4.083 5 C -0.205 4.205 6 C 0.108 3.892 7 O -0.340 6.340 8 C 0.020 3.980 9 C -0.123 4.123 10 C -0.064 4.064 11 C 0.170 3.830 12 N -0.746 5.746 13 C -0.253 4.253 14 H 0.072 0.928 15 C -0.074 4.074 16 N -0.970 5.970 17 Si 0.979 3.021 18 H -0.276 1.276 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.086 4.086 22 H 0.041 0.959 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.152 0.848 28 H 0.150 0.850 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.009 0.991 35 H 0.015 0.985 36 H 0.374 0.626 37 H 0.253 0.747 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.399 -12.314 -19.936 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.122 4.122 4 C -0.101 4.101 5 C -0.223 4.223 6 C 0.063 3.937 7 O -0.254 6.254 8 C -0.074 4.074 9 C -0.124 4.124 10 C -0.102 4.102 11 C 0.043 3.957 12 N -0.389 5.389 13 C -0.384 4.384 14 H 0.090 0.910 15 C -0.266 4.266 16 N -0.620 5.620 17 Si 0.807 3.193 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.104 4.104 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.170 0.830 28 H 0.168 0.832 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.027 0.973 35 H 0.033 0.967 36 H 0.206 0.794 37 H 0.062 0.938 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.275 -12.099 -19.782 23.190 hybrid contribution -0.147 0.920 0.714 1.174 sum 0.128 -11.180 -19.067 22.103 Atomic orbital electron populations 1.21760 0.94723 1.02285 1.01640 1.20498 0.96094 0.91045 1.03683 1.20062 1.01773 0.97921 0.92398 1.21125 0.96996 0.93482 0.98513 1.21452 1.06945 0.97238 0.96669 1.19093 0.96049 0.84321 0.94233 1.86140 1.80651 1.24812 1.33786 1.23295 1.01841 0.98976 0.83331 1.19244 1.05256 0.95262 0.92679 1.20353 0.97740 0.98137 0.93991 1.20582 0.95448 0.92938 0.86697 1.42571 1.17258 1.55890 1.23147 1.19603 0.95917 1.19979 1.02946 0.90994 1.25632 0.99686 1.02848 0.98432 1.69824 1.25051 1.48657 1.18501 0.85143 0.78308 0.78615 0.77276 1.20171 1.21650 1.20342 1.20938 0.97725 0.92708 0.99042 0.93992 0.92551 0.90983 0.89339 0.90879 0.82995 0.83203 0.91072 0.91700 0.87506 0.91145 0.92155 0.97279 0.96679 0.79417 0.93805 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.89 71.98 0.71 -1.66 16 2 C -0.08 -1.25 6.06 29.85 0.18 -1.07 16 3 C -0.12 -2.73 5.13 -19.85 -0.10 -2.83 16 4 C -0.08 -1.70 9.69 22.26 0.22 -1.48 16 5 C -0.20 -4.73 9.04 22.37 0.20 -4.53 16 6 C 0.11 3.30 6.66 22.51 0.15 3.45 16 7 O -0.34 -10.81 9.63 -92.39 -0.89 -11.70 16 8 C 0.02 0.40 9.81 113.37 1.11 1.52 16 9 C -0.12 -4.08 5.15 -19.77 -0.10 -4.18 16 10 C -0.06 -2.51 5.18 29.85 0.15 -2.36 16 11 C 0.17 7.90 6.24 86.38 0.54 8.44 16 12 N -0.75 -41.92 5.60 -343.46 -1.92 -43.84 16 13 C -0.25 -15.19 9.99 84.03 0.84 -14.36 16 14 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 15 C -0.07 -4.44 5.50 84.86 0.47 -3.98 16 16 N -0.97 -61.76 13.06 21.65 0.28 -61.48 16 17 Si 0.98 47.76 29.55 68.60 2.03 49.79 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 C -0.09 -2.42 9.33 22.25 0.21 -2.21 16 22 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 23 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.09 1.11 8.08 -2.39 -0.02 1.09 16 26 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 27 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.15 2.58 6.30 -2.91 -0.02 2.56 16 29 H 0.07 1.13 7.67 -2.39 -0.02 1.11 16 30 H 0.06 1.13 7.65 -2.38 -0.02 1.11 16 31 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 2.65 8.05 -2.38 -0.02 2.63 16 33 H 0.06 2.48 7.69 -2.39 -0.02 2.46 16 34 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.37 21.99 7.67 -92.71 -0.71 21.28 16 37 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -71.44 319.16 4.40 -67.05 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.32 Total: 25.43 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 4.58 Total: -25.25 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -1.64 Total: -105.32 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.89 Total: -11.70 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -71.44 4.40 -67.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258669482.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.451 kcal (2) G-P(sol) polarization free energy of solvation -71.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds