Wall clock time and date at job start Mon Mar 30 2020 04:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.46807 * 2 1 4 4 C 1.38167 * 120.03044 * 265.02307 * 3 2 1 5 5 C 1.38239 * 120.06015 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.94994 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47140 * 89.99384 * 6 5 4 8 8 N 1.46497 * 109.47535 * 180.02562 * 7 6 5 9 9 C 1.36929 * 120.00291 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00033 * 359.97438 * 9 8 7 11 11 C 1.38819 * 120.00026 * 180.02562 * 9 8 7 12 12 N 1.31624 * 119.99907 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00175 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46794 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.47067 * 119.99552 * 13 11 9 16 16 H 1.48490 * 109.46924 * 240.00066 * 13 11 9 17 17 C 1.38293 * 120.10779 * 0.02562 * 5 4 3 18 18 C 1.38114 * 120.05730 * 359.68584 * 17 5 4 19 19 C 1.38708 * 120.02883 * 85.00691 * 3 2 1 20 20 O 1.35902 * 120.05405 * 0.02562 * 19 3 2 21 21 C 1.42905 * 116.99876 * 180.02562 * 20 19 3 22 22 H 1.08995 * 109.47570 * 60.00263 * 1 2 3 23 23 H 1.09009 * 109.46900 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46974 * 299.99649 * 1 2 3 25 25 H 1.09001 * 109.46619 * 239.99992 * 2 1 3 26 26 H 1.08993 * 109.47116 * 120.00358 * 2 1 3 27 27 H 1.08000 * 119.96958 * 359.95617 * 4 3 2 28 28 H 1.08990 * 109.47831 * 209.99501 * 6 5 4 29 29 H 1.09004 * 109.46703 * 330.00127 * 6 5 4 30 30 H 1.09004 * 109.47322 * 300.00569 * 7 6 5 31 31 H 1.08997 * 109.47049 * 60.00170 * 7 6 5 32 32 H 0.97010 * 119.99488 * 0.02562 * 8 7 6 33 33 H 0.96996 * 119.99668 * 180.02562 * 12 11 9 34 34 H 1.08008 * 119.96976 * 179.97438 * 17 5 4 35 35 H 1.07998 * 120.03191 * 180.31711 * 18 17 5 36 36 H 1.09001 * 109.47103 * 60.00723 * 21 20 19 37 37 H 1.09004 * 109.47054 * 180.02562 * 21 20 19 38 38 H 1.09000 * 109.47187 * 300.00283 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0381 -1.1917 5 6 2.8208 3.3417 -1.1924 6 6 3.1787 4.0124 -2.4936 7 6 1.9448 4.7177 -3.0601 8 7 2.2925 5.3692 -4.3253 9 6 1.3412 6.0675 -5.0200 10 1 0.3345 6.1375 -4.6354 11 6 1.6706 6.6844 -6.2191 12 7 2.8972 6.5977 -6.6886 13 14 0.3727 7.6364 -7.1672 14 1 -0.9163 7.5826 -6.4317 15 1 0.8019 9.0508 -7.3098 16 1 0.2009 7.0330 -8.5130 17 6 2.9544 4.0309 -0.0010 18 6 2.6219 3.4203 1.1924 19 6 2.1651 2.1101 1.1963 20 8 1.8430 1.5050 2.3698 21 6 2.0042 2.2754 3.5626 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.2578 1.5017 -2.1234 28 1 3.9678 4.7440 -2.3203 29 1 3.5275 3.2633 -3.2045 30 1 1.1556 3.9860 -3.2335 31 1 1.5960 5.4666 -2.3492 32 1 3.1967 5.3060 -4.6710 33 1 3.1274 7.0291 -7.5263 34 1 3.3146 5.0491 -0.0041 35 1 2.7216 3.9606 2.1222 36 1 1.3751 3.1640 3.5090 37 1 1.7132 1.6754 4.4248 38 1 3.0475 2.5744 3.6639 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258733607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:23 Heat of formation + Delta-G solvation = -39.894396 kcal Electronic energy + Delta-G solvation = -17548.295948 eV Core-core repulsion = 14775.855988 eV Total energy + Delta-G solvation = -2772.439960 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25898 -38.81288 -36.89006 -35.28523 -33.87500 -31.96611 -30.52647 -29.13643 -27.76562 -25.61424 -24.82073 -23.37332 -22.58059 -21.13298 -19.16372 -18.85633 -17.45811 -16.81051 -16.59839 -16.08390 -15.48687 -15.41768 -15.30829 -15.06911 -14.74656 -14.50375 -14.20314 -13.92553 -13.23818 -13.11552 -12.91233 -12.82498 -12.59206 -12.55745 -12.37284 -12.19623 -12.07875 -11.88068 -11.66679 -11.61545 -11.45922 -10.96166 -9.75896 -9.03022 -8.93070 -7.96719 -5.26614 0.39855 0.46586 1.47103 1.48330 1.58732 2.42419 2.54914 2.76848 3.36722 3.74780 3.79158 3.89475 4.17890 4.26334 4.32887 4.39488 4.42349 4.47698 4.48377 4.54468 4.56660 4.69935 4.75716 4.76164 4.85261 5.04391 5.09249 5.13401 5.24301 5.26872 5.38625 5.43183 5.47752 5.54945 5.78248 5.86934 6.25775 6.49225 7.31706 8.06068 8.31147 9.27042 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.033717 B = 0.003937 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.239116 B = 7110.308010 C = 7391.731451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C -0.122 4.122 4 C -0.085 4.085 5 C -0.114 4.114 6 C -0.071 4.071 7 C 0.162 3.838 8 N -0.748 5.748 9 C -0.250 4.250 10 H 0.074 0.926 11 C -0.075 4.075 12 N -0.969 5.969 13 Si 0.976 3.024 14 H -0.267 1.267 15 H -0.290 1.290 16 H -0.290 1.290 17 C -0.090 4.090 18 C -0.203 4.203 19 C 0.113 3.887 20 O -0.326 6.326 21 C 0.018 3.982 22 H 0.046 0.954 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.131 0.869 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.375 0.625 33 H 0.253 0.747 34 H 0.131 0.869 35 H 0.149 0.851 36 H 0.060 0.940 37 H 0.120 0.880 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.332 -11.940 20.755 23.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 C -0.123 4.123 4 C -0.103 4.103 5 C -0.115 4.115 6 C -0.109 4.109 7 C 0.036 3.964 8 N -0.391 5.391 9 C -0.381 4.381 10 H 0.091 0.909 11 C -0.267 4.267 12 N -0.620 5.620 13 Si 0.805 3.195 14 H -0.191 1.191 15 H -0.217 1.217 16 H -0.217 1.217 17 C -0.108 4.108 18 C -0.222 4.222 19 C 0.067 3.933 20 O -0.240 6.240 21 C -0.076 4.076 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.067 0.933 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.149 0.851 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.207 0.793 33 H 0.061 0.939 34 H 0.149 0.851 35 H 0.167 0.833 36 H 0.078 0.922 37 H 0.138 0.862 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.595 -12.075 20.795 24.099 hybrid contribution -0.038 1.012 -0.833 1.311 sum -1.633 -11.063 19.961 22.880 Atomic orbital electron populations 1.21682 0.94543 1.02236 1.01348 1.20361 0.96357 0.91111 1.03069 1.19449 1.04392 0.98140 0.90296 1.20926 0.97675 0.94263 0.97463 1.19725 1.02325 0.94795 0.94671 1.20524 0.97441 0.99130 0.93777 1.20707 0.95498 0.93743 0.86466 1.42613 1.11046 1.62390 1.23024 1.19677 0.92548 1.24047 1.01852 0.90853 1.25610 0.98775 1.02956 0.99354 1.69827 1.19521 1.50242 1.22398 0.85036 0.78586 0.77724 0.78191 1.19133 1.21733 1.21742 1.21022 0.98390 0.99949 0.91411 1.21393 1.06267 0.94718 0.99774 1.18936 0.96561 0.91640 0.86134 1.86034 1.82233 1.42274 1.13454 1.23316 1.02157 0.97466 0.84705 0.93508 0.90949 0.93293 0.90440 0.90589 0.85075 0.91092 0.91177 0.96618 0.96556 0.79301 0.93851 0.85081 0.83326 0.92182 0.86228 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.89 71.98 0.71 -2.08 16 2 C -0.07 -1.50 5.79 29.85 0.17 -1.33 16 3 C -0.12 -3.12 5.15 -19.77 -0.10 -3.22 16 4 C -0.09 -2.38 9.33 22.25 0.21 -2.18 16 5 C -0.11 -3.43 5.13 -19.85 -0.10 -3.53 16 6 C -0.07 -2.45 5.46 29.85 0.16 -2.29 16 7 C 0.16 6.94 6.24 86.38 0.54 7.48 16 8 N -0.75 -39.90 5.60 -343.45 -1.92 -41.82 16 9 C -0.25 -14.49 9.99 84.04 0.84 -13.65 16 10 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 11 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 12 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 13 Si 0.98 46.91 29.55 68.60 2.03 48.93 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 16 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 17 C -0.09 -2.41 9.69 22.25 0.22 -2.20 16 18 C -0.20 -4.76 9.04 22.36 0.20 -4.56 16 19 C 0.11 2.76 6.66 22.51 0.15 2.91 16 20 O -0.33 -6.88 9.63 -92.44 -0.89 -7.77 16 21 C 0.02 0.23 9.81 113.37 1.11 1.34 16 22 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.08 1.47 8.05 -2.39 -0.02 1.45 16 26 H 0.08 1.52 7.69 -2.39 -0.02 1.50 16 27 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 28 H 0.07 2.41 8.08 -2.39 -0.02 2.39 16 29 H 0.07 2.40 8.08 -2.38 -0.02 2.38 16 30 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.38 20.94 7.67 -92.70 -0.71 20.23 16 33 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 34 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.15 2.63 6.30 -2.91 -0.02 2.61 16 36 H 0.06 0.71 7.65 -2.39 -0.02 0.69 16 37 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.06 0.70 7.67 -2.39 -0.02 0.68 16 Total: -1.00 -67.55 319.16 4.39 -63.15 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.32 Total: 24.83 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 4.58 Total: -27.23 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -1.64 Total: -101.92 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.89 Total: -7.77 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal Total: -67.55 4.39 -63.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258733607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.256 kcal (2) G-P(sol) polarization free energy of solvation -67.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds