Wall clock time and date at job start Mon Mar 30 2020 04:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38235 * 120.00236 * 2 1 4 4 C 1.38230 * 120.00326 * 179.72466 * 3 2 1 5 5 C 1.50696 * 120.00309 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99880 * 359.97438 * 4 3 2 7 7 C 1.38234 * 120.00264 * 359.95214 * 6 4 3 8 8 C 1.50701 * 120.00279 * 180.02562 * 7 6 4 9 9 H 1.08991 * 109.47206 * 24.99793 * 8 7 6 10 10 O 1.42898 * 109.47355 * 145.00225 * 8 7 6 11 11 C 1.53005 * 109.46914 * 265.00112 * 8 7 6 12 12 H 1.09008 * 109.47123 * 299.99833 * 11 8 7 13 13 N 1.46896 * 109.47366 * 60.00020 * 11 8 7 14 14 C 1.52997 * 109.47058 * 180.02562 * 11 8 7 15 15 C 1.50697 * 109.47388 * 175.00052 * 14 11 8 16 16 H 1.08001 * 119.99920 * 359.97438 * 15 14 11 17 17 C 1.37875 * 120.00297 * 179.97438 * 15 14 11 18 18 N 1.31511 * 119.99948 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00283 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46921 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47490 * 119.99599 * 19 17 15 22 22 H 1.48502 * 109.47051 * 240.00039 * 19 17 15 23 23 C 1.38232 * 119.99842 * 0.13879 * 7 6 4 24 24 H 1.09000 * 109.47344 * 89.99948 * 1 2 3 25 25 H 1.09003 * 109.46871 * 209.99878 * 1 2 3 26 26 H 1.09001 * 109.47017 * 329.99216 * 1 2 3 27 27 H 1.08000 * 119.99297 * 359.70257 * 3 2 1 28 28 H 1.08996 * 109.47441 * 89.99986 * 5 4 3 29 29 H 1.09003 * 109.47255 * 210.00399 * 5 4 3 30 30 H 1.09001 * 109.46747 * 329.99788 * 5 4 3 31 31 H 1.08008 * 120.00283 * 179.97438 * 6 4 3 32 32 H 0.96705 * 113.99766 * 59.99443 * 10 8 7 33 33 H 1.00907 * 110.99810 * 296.04952 * 13 11 8 34 34 H 1.00899 * 110.99801 * 59.99165 * 13 11 8 35 35 H 1.09005 * 109.46859 * 295.00088 * 14 11 8 36 36 H 1.09002 * 109.47685 * 54.99856 * 14 11 8 37 37 H 0.96998 * 120.00364 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.00365 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.3341 2.5022 0.0052 6 6 4.2717 0.0000 0.0120 7 6 3.5806 -1.1972 0.0136 8 6 4.3340 -2.5023 0.0210 9 1 5.3206 -2.3497 0.4585 10 8 3.6135 -3.4639 0.7943 11 6 4.4856 -3.0118 -1.4137 12 1 3.4990 -3.1643 -1.8513 13 7 5.2264 -2.0233 -2.2087 14 6 5.2500 -4.3371 -1.4062 15 6 5.2929 -4.9003 -2.8033 16 1 4.8217 -4.3666 -3.6153 17 6 5.9337 -6.0970 -3.0448 18 7 6.5080 -6.7467 -2.0561 19 14 5.9862 -6.7955 -4.7765 20 1 5.2720 -5.8793 -5.7017 21 1 7.3992 -6.9346 -5.2116 22 1 5.3297 -8.1274 -4.7931 23 6 2.1983 -1.1972 0.0059 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5140 27 1 1.6582 2.1324 -0.0049 28 1 4.5115 2.8198 1.0326 29 1 5.2886 2.3704 -0.5044 30 1 3.7471 3.2603 -0.5133 31 1 5.3518 0.0000 0.0161 32 1 2.7245 -3.6495 0.4620 33 1 4.7107 -1.1591 -2.2827 34 1 6.1450 -1.8642 -1.8230 35 1 6.2667 -4.1681 -1.0512 36 1 4.7471 -5.0430 -0.7452 37 1 6.9591 -7.5883 -2.2260 38 1 1.6582 -2.1325 0.0067 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259347072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:02 Heat of formation + Delta-G solvation = -71.650464 kcal Electronic energy + Delta-G solvation = -18139.850181 eV Core-core repulsion = 15366.033175 eV Total energy + Delta-G solvation = -2773.817006 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.02161 -38.70182 -36.00731 -34.58344 -34.29950 -32.87017 -30.16416 -28.39659 -27.63460 -27.49736 -25.28626 -22.15062 -21.82140 -21.19343 -18.48856 -18.04737 -17.27173 -16.88286 -16.60114 -16.33788 -15.92259 -15.18415 -14.88809 -14.57155 -14.15101 -14.11440 -13.98279 -13.85274 -13.43160 -13.31272 -13.08251 -12.79565 -12.73254 -12.49627 -12.44874 -12.26527 -12.02118 -11.83577 -11.69216 -11.19821 -10.99521 -10.51111 -9.64912 -9.47635 -9.22479 -8.11338 -6.17944 0.37459 0.42584 1.41085 1.41773 1.55483 2.46200 2.72880 3.21509 3.48298 3.57524 3.82056 3.91865 3.98821 4.17142 4.17910 4.24923 4.47432 4.49138 4.59804 4.68544 4.78639 4.82111 4.85672 4.98000 5.03647 5.07386 5.22640 5.35936 5.51867 5.58118 5.62475 5.67896 5.71380 5.87083 6.10544 6.28513 6.48302 6.72369 6.76429 6.96916 7.48586 9.00693 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.030225 B = 0.004998 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.175009 B = 5601.364206 C = 5794.692225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.083 4.083 3 C -0.131 4.131 4 C -0.082 4.082 5 C -0.112 4.112 6 C -0.135 4.135 7 C -0.111 4.111 8 C 0.121 3.879 9 H 0.086 0.914 10 O -0.566 6.566 11 C 0.095 3.905 12 H 0.063 0.937 13 N -0.824 5.824 14 C 0.040 3.960 15 C -0.505 4.505 16 H 0.057 0.943 17 C -0.007 4.007 18 N -0.940 5.940 19 Si 0.961 3.039 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.280 1.280 23 C -0.135 4.135 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.144 0.856 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.381 0.619 33 H 0.338 0.662 34 H 0.337 0.663 35 H -0.014 1.014 36 H 0.000 1.000 37 H 0.259 0.741 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.221 18.836 4.669 21.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.083 4.083 3 C -0.149 4.149 4 C -0.082 4.082 5 C -0.168 4.168 6 C -0.153 4.153 7 C -0.111 4.111 8 C 0.059 3.941 9 H 0.104 0.896 10 O -0.372 6.372 11 C -0.018 4.018 12 H 0.081 0.919 13 N -0.355 5.355 14 C 0.003 3.997 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.203 4.203 18 N -0.581 5.581 19 Si 0.787 3.213 20 H -0.190 1.190 21 H -0.208 1.208 22 H -0.206 1.206 23 C -0.153 4.153 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.162 0.838 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.140 0.860 32 H 0.231 0.769 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.004 0.996 36 H 0.019 0.981 37 H 0.068 0.932 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.666 18.163 4.450 21.050 hybrid contribution 0.009 -0.415 -0.069 0.421 sum -9.657 17.747 4.381 20.674 Atomic orbital electron populations 1.20839 0.89269 1.03684 1.03101 1.20183 0.97471 0.92547 0.98131 1.21225 0.93586 0.98261 1.01830 1.20180 0.94300 0.95661 0.98072 1.20834 1.00033 0.92891 1.03088 1.20973 0.99937 0.91584 1.02788 1.20523 0.94941 0.95275 1.00379 1.21761 0.94199 0.85008 0.93114 0.89593 1.86561 1.32682 1.62349 1.55614 1.21912 0.97482 0.93217 0.89143 0.91889 1.58641 1.06303 1.13816 1.56772 1.18927 0.93549 0.91525 0.95713 1.21516 1.33202 1.04568 0.95024 0.92429 1.25913 0.95674 0.97727 1.00952 1.70120 1.38137 1.16669 1.33219 0.85451 0.77685 0.78051 0.80115 1.18954 1.20783 1.20633 1.20915 0.93238 0.98695 1.02405 0.90405 0.91184 0.90005 0.83811 0.90335 0.91148 0.90065 0.85965 0.76949 0.84865 0.84966 0.99609 0.98142 0.93201 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 10.01 71.24 0.71 -1.03 16 2 C -0.08 -1.81 5.88 -19.86 -0.12 -1.93 16 3 C -0.13 -2.62 9.36 22.27 0.21 -2.42 16 4 C -0.08 -1.74 5.88 -19.87 -0.12 -1.86 16 5 C -0.11 -1.67 10.01 71.23 0.71 -0.96 16 6 C -0.13 -3.42 8.38 22.27 0.19 -3.24 16 7 C -0.11 -3.21 4.30 -19.87 -0.09 -3.29 16 8 C 0.12 4.24 2.95 29.85 0.09 4.33 16 9 H 0.09 3.17 8.05 -2.39 -0.02 3.15 16 10 O -0.57 -20.89 12.38 -148.98 -1.84 -22.74 16 11 C 0.09 3.87 2.51 44.92 0.11 3.99 16 12 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 13 N -0.82 -30.64 8.80 -168.67 -1.48 -32.13 16 14 C 0.04 2.15 4.55 29.85 0.14 2.29 16 15 C -0.50 -29.39 8.84 25.60 0.23 -29.16 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 17 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 18 N -0.94 -58.97 13.29 21.45 0.28 -58.69 16 19 Si 0.96 46.21 29.54 68.60 2.03 48.23 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 C -0.13 -3.51 8.98 22.27 0.20 -3.31 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 26 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 27 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 30 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 31 H 0.12 2.93 8.06 -2.91 -0.02 2.90 16 32 H 0.38 11.50 7.39 -74.05 -0.55 10.95 16 33 H 0.34 10.76 7.45 -89.69 -0.67 10.09 16 34 H 0.34 12.04 9.00 -89.69 -0.81 11.23 16 35 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 36 H 0.00 0.02 7.54 -2.39 -0.02 0.00 16 37 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.12 2.98 6.62 -2.91 -0.02 2.96 16 Total: -1.00 -70.12 315.55 0.76 -69.36 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: -0.95 Total: 32.47 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 2.73 Total: -36.51 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -1.20 Total: -90.82 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -1.84 Total: -22.74 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -70.12 0.76 -69.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259347072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.286 kcal (2) G-P(sol) polarization free energy of solvation -70.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds