Wall clock time and date at job start Mon Mar 30 2020 04:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46818 * 2 1 4 4 C 1.53004 * 109.47034 * 240.00304 * 2 1 3 5 5 O 1.42897 * 109.47073 * 59.99671 * 4 2 1 6 6 C 1.50695 * 109.47608 * 119.99777 * 2 1 3 7 7 C 1.38232 * 120.00003 * 300.00485 * 6 2 1 8 8 C 1.38236 * 120.00051 * 179.97438 * 7 6 2 9 9 C 1.38241 * 120.00048 * 359.95450 * 8 7 6 10 10 C 1.50702 * 120.00224 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.46490 * 339.99768 * 10 9 8 12 12 N 1.46896 * 109.46621 * 219.99895 * 10 9 8 13 13 C 1.50696 * 109.47168 * 99.99651 * 10 9 8 14 14 H 1.07999 * 120.00202 * 359.97438 * 13 10 9 15 15 C 1.37884 * 119.99746 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99573 * 0.27650 * 15 13 10 17 17 Si 1.86800 * 119.99781 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47364 * 359.97438 * 17 15 13 19 19 H 1.48508 * 109.46883 * 120.00040 * 17 15 13 20 20 H 1.48497 * 109.46870 * 239.99850 * 17 15 13 21 21 C 1.38229 * 119.99681 * 0.27280 * 9 8 7 22 22 C 1.38232 * 120.00090 * 119.97762 * 6 2 1 23 23 H 1.09007 * 109.46871 * 299.99702 * 1 2 3 24 24 H 1.08998 * 109.47817 * 59.99966 * 1 2 3 25 25 H 1.09001 * 109.46658 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46979 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46778 * 300.00036 * 3 2 1 28 28 H 1.08994 * 109.47223 * 60.00174 * 3 2 1 29 29 H 1.09000 * 109.46457 * 179.97438 * 4 2 1 30 30 H 1.09001 * 109.46797 * 299.99178 * 4 2 1 31 31 H 0.96704 * 113.99775 * 180.02562 * 5 4 2 32 32 H 1.08000 * 120.00216 * 359.97367 * 7 6 2 33 33 H 1.07999 * 120.00179 * 179.97438 * 8 7 6 34 34 H 1.00896 * 111.00177 * 299.99157 * 12 10 9 35 35 H 1.00900 * 111.00585 * 63.95654 * 12 10 9 36 36 H 0.97001 * 120.00651 * 359.71956 * 16 15 13 37 37 H 1.08006 * 120.00194 * 179.72698 * 21 9 8 38 38 H 1.07999 * 119.99779 * 0.02562 * 22 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.5636 -0.0476 -2.4160 6 6 2.0324 -0.7103 1.2304 7 6 1.6985 -0.2381 2.4859 8 6 2.1589 -0.8900 3.6146 9 6 2.9526 -2.0147 3.4878 10 6 3.4541 -2.7257 4.7182 11 1 3.4076 -2.0503 5.5724 12 7 4.8439 -3.1512 4.5055 13 6 2.5942 -3.9340 4.9858 14 1 1.7669 -4.1638 4.3306 15 6 2.8629 -4.7455 6.0676 16 7 3.8664 -4.4619 6.8691 17 14 1.7965 -6.2428 6.3997 18 1 0.7370 -6.3357 5.3633 19 1 2.6363 -7.4670 6.3610 20 1 1.1682 -6.1157 7.7392 21 6 3.2904 -2.4842 2.2323 22 6 2.8268 -1.8345 1.1036 23 1 -0.3633 0.5138 0.8901 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1300 -0.7208 -1.2494 30 1 1.6767 -1.7489 -1.2492 31 1 1.8486 -0.4513 -3.2472 32 1 1.0778 0.6402 2.5851 33 1 1.8984 -0.5208 4.5955 34 1 4.9136 -3.7786 3.7184 35 1 5.4521 -2.3547 4.3879 36 1 4.4199 -3.6842 6.6968 37 1 3.9141 -3.3603 2.1331 38 1 3.0877 -2.2034 0.1227 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260062065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:37 Heat of formation + Delta-G solvation = -42.744050 kcal Electronic energy + Delta-G solvation = -18224.752891 eV Core-core repulsion = 15452.189360 eV Total energy + Delta-G solvation = -2772.563530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.72930 -37.57408 -35.47845 -33.83930 -31.27794 -30.64277 -28.68502 -27.20714 -26.50566 -25.43730 -22.92314 -21.83106 -20.59575 -18.92156 -17.79314 -16.83840 -15.64719 -15.26764 -15.10241 -14.58838 -14.37078 -13.80280 -13.69925 -13.46970 -13.15567 -12.92663 -12.70409 -12.50837 -12.08865 -11.89847 -11.78194 -11.37666 -11.02984 -10.96925 -10.73542 -10.57596 -10.19641 -10.10851 -10.08830 -10.03289 -8.86849 -8.42150 -8.32478 -7.82413 -7.45721 -6.17801 -4.00903 1.90822 1.91853 3.47995 3.51289 3.64975 4.07109 4.27706 4.61570 4.73107 4.91712 4.98069 5.29734 5.35995 5.39502 5.47018 5.48239 5.58274 5.74245 5.78380 5.86915 5.91815 5.94358 6.05542 6.10687 6.16917 6.29745 6.31760 6.48074 6.59847 6.92410 6.98202 7.02371 7.42666 7.46963 7.54939 7.99149 8.30275 8.66390 8.76358 9.05921 9.82707 11.21949 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.035284 B = 0.004991 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.380833 B = 5609.258403 C = 5756.716871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.016 4.016 3 C -0.132 4.132 4 C 0.085 3.915 5 O -0.571 6.571 6 C -0.100 4.100 7 C -0.112 4.112 8 C -0.120 4.120 9 C -0.066 4.066 10 C 0.235 3.765 11 H 0.037 0.963 12 N -0.829 5.829 13 C -0.607 4.607 14 H 0.046 0.954 15 C 0.038 3.962 16 N -0.892 5.892 17 Si 1.069 2.931 18 H -0.292 1.292 19 H -0.288 1.288 20 H -0.288 1.288 21 C -0.118 4.118 22 C -0.126 4.126 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.376 0.624 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.325 0.675 35 H 0.302 0.698 36 H 0.290 0.710 37 H 0.115 0.885 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.026 8.705 -15.115 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.016 4.016 3 C -0.189 4.189 4 C 0.007 3.993 5 O -0.376 6.376 6 C -0.100 4.100 7 C -0.130 4.130 8 C -0.138 4.138 9 C -0.069 4.069 10 C 0.126 3.874 11 H 0.055 0.945 12 N -0.357 5.357 13 C -0.645 4.645 14 H 0.065 0.935 15 C -0.172 4.172 16 N -0.527 5.527 17 Si 0.898 3.102 18 H -0.218 1.218 19 H -0.215 1.215 20 H -0.215 1.215 21 C -0.136 4.136 22 C -0.144 4.144 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.222 0.778 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.538 7.498 -12.867 15.307 hybrid contribution 0.347 1.247 -2.403 2.729 sum -3.192 8.745 -15.270 17.884 Atomic orbital electron populations 1.21795 0.93505 1.01923 1.01762 1.19335 0.96185 0.95324 0.90762 1.21790 1.00754 0.94581 1.01791 1.22329 0.97153 0.94764 0.85021 1.86443 1.77668 1.57502 1.16025 1.19408 1.00233 0.96815 0.93533 1.20789 1.00438 0.99871 0.91951 1.21063 0.98622 0.96151 0.97988 1.21489 0.94458 0.93310 0.97611 1.18378 0.85770 0.94837 0.88378 0.94543 1.59452 1.09065 1.18991 1.48179 1.21724 1.15533 1.11905 1.15374 0.93530 1.25631 0.97710 1.01229 0.92632 1.70493 1.15877 1.28909 1.37375 0.83574 0.75242 0.75727 0.75639 1.21801 1.21460 1.21475 1.20917 1.01079 0.99561 0.92091 1.20951 0.99228 0.96097 0.98137 0.92601 0.91939 0.92801 0.92938 0.91930 0.92618 0.93445 0.93335 0.77782 0.87033 0.86581 0.86138 0.88802 0.89741 0.86666 0.87011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.14 37.16 0.30 -1.34 16 2 C -0.02 -0.20 0.69 -155.66 -0.11 -0.31 16 3 C -0.13 -1.58 8.14 37.16 0.30 -1.27 16 4 C 0.08 0.96 4.57 37.16 0.17 1.12 16 5 O -0.57 -5.85 12.31 -35.23 -0.43 -6.29 16 6 C -0.10 -1.54 4.76 -104.63 -0.50 -2.04 16 7 C -0.11 -1.85 8.71 -39.58 -0.34 -2.19 16 8 C -0.12 -2.29 9.67 -39.58 -0.38 -2.68 16 9 C -0.07 -1.40 4.88 -104.62 -0.51 -1.91 16 10 C 0.24 5.77 2.47 -70.02 -0.17 5.60 16 11 H 0.04 0.97 7.86 -51.93 -0.41 0.56 16 12 N -0.83 -18.91 7.63 -6.65 -0.05 -18.96 16 13 C -0.61 -16.90 8.71 -34.44 -0.30 -17.20 16 14 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 15 C 0.04 1.07 5.39 -17.82 -0.10 0.98 16 16 N -0.89 -26.92 13.51 55.43 0.75 -26.17 16 17 Si 1.07 25.48 29.90 -169.99 -5.08 20.40 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.12 -2.24 9.29 -39.58 -0.37 -2.61 16 22 C -0.13 -2.05 8.98 -39.58 -0.36 -2.40 16 23 H 0.05 0.67 7.39 -51.93 -0.38 0.29 16 24 H 0.06 0.74 7.68 -51.93 -0.40 0.34 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.72 7.68 -51.93 -0.40 0.32 16 28 H 0.05 0.64 7.39 -51.93 -0.38 0.26 16 29 H 0.05 0.51 7.52 -51.93 -0.39 0.12 16 30 H 0.05 0.54 7.51 -51.93 -0.39 0.15 16 31 H 0.38 2.16 9.12 45.56 0.42 2.57 16 32 H 0.11 1.59 7.10 -52.49 -0.37 1.21 16 33 H 0.12 2.16 8.04 -52.49 -0.42 1.74 16 34 H 0.33 7.13 7.33 -39.29 -0.29 6.85 16 35 H 0.30 6.09 9.06 -39.29 -0.36 5.73 16 36 H 0.29 8.74 6.40 -40.82 -0.26 8.48 16 37 H 0.12 2.15 6.65 -52.48 -0.35 1.80 16 38 H 0.11 1.52 5.90 -52.49 -0.31 1.22 16 LS Contribution 305.72 15.07 4.61 4.61 Total: -1.00 -31.31 305.72 -7.32 -38.63 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -4.74 Total: 14.02 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -2.36 Total: -26.24 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.70 Total: -45.13 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.43 Total: -6.29 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.31 -7.32 -38.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.115 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds