Wall clock time and date at job start Mon Mar 30 2020 04:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46818 * 2 1 4 4 C 1.53004 * 109.47034 * 240.00304 * 2 1 3 5 5 O 1.42897 * 109.47073 * 59.99671 * 4 2 1 6 6 C 1.50695 * 109.47608 * 119.99777 * 2 1 3 7 7 C 1.38232 * 120.00003 * 300.00485 * 6 2 1 8 8 C 1.38236 * 120.00051 * 179.97438 * 7 6 2 9 9 C 1.38241 * 120.00048 * 359.95450 * 8 7 6 10 10 C 1.50702 * 120.00224 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.46490 * 339.99768 * 10 9 8 12 12 N 1.46896 * 109.46621 * 219.99895 * 10 9 8 13 13 C 1.50696 * 109.47168 * 99.99651 * 10 9 8 14 14 H 1.07999 * 120.00202 * 359.97438 * 13 10 9 15 15 C 1.37884 * 119.99746 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99573 * 0.27650 * 15 13 10 17 17 Si 1.86800 * 119.99781 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47364 * 359.97438 * 17 15 13 19 19 H 1.48508 * 109.46883 * 120.00040 * 17 15 13 20 20 H 1.48497 * 109.46870 * 239.99850 * 17 15 13 21 21 C 1.38229 * 119.99681 * 0.27280 * 9 8 7 22 22 C 1.38232 * 120.00090 * 119.97762 * 6 2 1 23 23 H 1.09007 * 109.46871 * 299.99702 * 1 2 3 24 24 H 1.08998 * 109.47817 * 59.99966 * 1 2 3 25 25 H 1.09001 * 109.46658 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46979 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46778 * 300.00036 * 3 2 1 28 28 H 1.08994 * 109.47223 * 60.00174 * 3 2 1 29 29 H 1.09000 * 109.46457 * 179.97438 * 4 2 1 30 30 H 1.09001 * 109.46797 * 299.99178 * 4 2 1 31 31 H 0.96704 * 113.99775 * 180.02562 * 5 4 2 32 32 H 1.08000 * 120.00216 * 359.97367 * 7 6 2 33 33 H 1.07999 * 120.00179 * 179.97438 * 8 7 6 34 34 H 1.00896 * 111.00177 * 299.99157 * 12 10 9 35 35 H 1.00900 * 111.00585 * 63.95654 * 12 10 9 36 36 H 0.97001 * 120.00651 * 359.71956 * 16 15 13 37 37 H 1.08006 * 120.00194 * 179.72698 * 21 9 8 38 38 H 1.07999 * 119.99779 * 0.02562 * 22 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.5636 -0.0476 -2.4160 6 6 2.0324 -0.7103 1.2304 7 6 1.6985 -0.2381 2.4859 8 6 2.1589 -0.8900 3.6146 9 6 2.9526 -2.0147 3.4878 10 6 3.4541 -2.7257 4.7182 11 1 3.4076 -2.0503 5.5724 12 7 4.8439 -3.1512 4.5055 13 6 2.5942 -3.9340 4.9858 14 1 1.7669 -4.1638 4.3306 15 6 2.8629 -4.7455 6.0676 16 7 3.8664 -4.4619 6.8691 17 14 1.7965 -6.2428 6.3997 18 1 0.7370 -6.3357 5.3633 19 1 2.6363 -7.4670 6.3610 20 1 1.1682 -6.1157 7.7392 21 6 3.2904 -2.4842 2.2323 22 6 2.8268 -1.8345 1.1036 23 1 -0.3633 0.5138 0.8901 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1300 -0.7208 -1.2494 30 1 1.6767 -1.7489 -1.2492 31 1 1.8486 -0.4513 -3.2472 32 1 1.0778 0.6402 2.5851 33 1 1.8984 -0.5208 4.5955 34 1 4.9136 -3.7786 3.7184 35 1 5.4521 -2.3547 4.3879 36 1 4.4199 -3.6842 6.6968 37 1 3.9141 -3.3603 2.1331 38 1 3.0877 -2.2034 0.1227 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260062065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:36 Heat of formation + Delta-G solvation = -64.665414 kcal Electronic energy + Delta-G solvation = -18225.703472 eV Core-core repulsion = 15452.189360 eV Total energy + Delta-G solvation = -2773.514112 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.99725 -38.73822 -36.84313 -35.25875 -33.24229 -32.01731 -30.18208 -28.14744 -27.72010 -27.15931 -24.62820 -23.18849 -22.20295 -20.11014 -18.94285 -18.61085 -17.06688 -16.74011 -16.07586 -15.95758 -15.79802 -15.55631 -15.18421 -14.83243 -14.46732 -14.15542 -14.03752 -13.85040 -13.53828 -13.19531 -13.01212 -12.78491 -12.60520 -12.39500 -12.09947 -12.05873 -11.93262 -11.57507 -11.24904 -10.90178 -10.82296 -10.49597 -9.81394 -9.50984 -9.16893 -8.40015 -6.26418 0.49819 0.50894 1.54180 1.63046 1.78957 2.60592 2.88739 3.24603 3.30027 3.67604 3.97530 3.98902 4.11073 4.17265 4.21022 4.23343 4.33278 4.55372 4.61373 4.64801 4.68591 4.82266 4.93964 4.99653 4.99832 5.03006 5.19266 5.23610 5.31231 5.37065 5.59066 5.66171 5.83509 5.91975 6.13824 6.22130 6.66508 6.76063 6.91986 7.02782 7.64809 8.95917 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.035284 B = 0.004991 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.380833 B = 5609.258403 C = 5756.716871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.018 4.018 3 C -0.129 4.129 4 C 0.087 3.913 5 O -0.581 6.581 6 C -0.087 4.087 7 C -0.108 4.108 8 C -0.136 4.136 9 C -0.096 4.096 10 C 0.240 3.760 11 H 0.004 0.996 12 N -0.835 5.835 13 C -0.614 4.614 14 H 0.033 0.967 15 C -0.011 4.011 16 N -0.920 5.920 17 Si 1.115 2.885 18 H -0.280 1.280 19 H -0.280 1.280 20 H -0.281 1.281 21 C -0.127 4.127 22 C -0.121 4.121 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.396 0.604 32 H 0.136 0.864 33 H 0.109 0.891 34 H 0.331 0.669 35 H 0.317 0.683 36 H 0.278 0.722 37 H 0.113 0.887 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 9.121 -17.436 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.018 4.018 3 C -0.186 4.186 4 C 0.010 3.990 5 O -0.389 6.389 6 C -0.087 4.087 7 C -0.126 4.126 8 C -0.155 4.155 9 C -0.098 4.098 10 C 0.130 3.870 11 H 0.022 0.978 12 N -0.364 5.364 13 C -0.652 4.652 14 H 0.051 0.949 15 C -0.214 4.214 16 N -0.555 5.555 17 Si 0.938 3.062 18 H -0.205 1.205 19 H -0.206 1.206 20 H -0.207 1.207 21 C -0.146 4.146 22 C -0.139 4.139 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.246 0.754 32 H 0.154 0.846 33 H 0.127 0.873 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.131 0.869 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.377 7.927 -15.218 17.708 hybrid contribution 0.592 1.231 -1.809 2.267 sum -3.785 9.158 -17.028 19.701 Atomic orbital electron populations 1.21776 0.93067 1.01636 1.02295 1.19394 0.96465 0.95726 0.90251 1.21763 1.00651 0.93898 1.02300 1.22209 0.97462 0.94536 0.84834 1.86388 1.77858 1.57841 1.16775 1.19770 0.98537 0.96064 0.94369 1.21017 0.99984 1.00166 0.91428 1.21121 0.99111 0.96303 0.98924 1.21168 0.96893 0.94796 0.96973 1.18037 0.86317 0.93413 0.89204 0.97827 1.59207 1.08649 1.19922 1.48616 1.21997 1.15426 1.12929 1.14878 0.94890 1.26979 0.98130 1.03772 0.92566 1.70612 1.17180 1.29239 1.38466 0.82966 0.74207 0.72918 0.76092 1.20533 1.20617 1.20677 1.20958 1.01539 0.99911 0.92158 1.21253 0.98341 0.95771 0.98508 0.92440 0.91097 0.93487 0.93075 0.91196 0.92391 0.92764 0.93153 0.75397 0.84596 0.87261 0.85587 0.87171 0.91022 0.86929 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.14 71.98 0.59 -2.27 16 2 C -0.02 -0.41 0.69 -52.93 -0.04 -0.45 16 3 C -0.13 -2.67 8.14 71.98 0.59 -2.08 16 4 C 0.09 1.65 4.57 71.98 0.33 1.98 16 5 O -0.58 -9.76 12.31 -148.98 -1.83 -11.60 16 6 C -0.09 -2.48 4.76 -19.87 -0.09 -2.57 16 7 C -0.11 -3.38 8.71 22.27 0.19 -3.18 16 8 C -0.14 -5.24 9.67 22.27 0.22 -5.03 16 9 C -0.10 -4.11 4.88 -19.87 -0.10 -4.21 16 10 C 0.24 12.18 2.47 43.42 0.11 12.29 16 11 H 0.00 0.22 7.86 -2.39 -0.02 0.20 16 12 N -0.84 -39.10 7.63 -174.96 -1.33 -40.43 16 13 C -0.61 -35.02 8.71 25.60 0.22 -34.79 16 14 H 0.03 1.92 7.74 -2.91 -0.02 1.90 16 15 C -0.01 -0.63 5.39 84.66 0.46 -0.18 16 16 N -0.92 -56.71 13.51 21.45 0.29 -56.42 16 17 Si 1.11 51.58 29.90 68.60 2.05 53.63 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 21 C -0.13 -4.75 9.29 22.27 0.21 -4.54 16 22 C -0.12 -3.66 8.98 22.27 0.20 -3.46 16 23 H 0.06 1.22 7.39 -2.38 -0.02 1.20 16 24 H 0.07 1.44 7.68 -2.39 -0.02 1.43 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.37 7.68 -2.39 -0.02 1.35 16 28 H 0.06 1.16 7.39 -2.39 -0.02 1.14 16 29 H 0.05 0.96 7.52 -2.39 -0.02 0.94 16 30 H 0.05 0.94 7.51 -2.39 -0.02 0.92 16 31 H 0.40 3.09 9.12 -74.05 -0.68 2.41 16 32 H 0.14 3.53 7.10 -2.91 -0.02 3.51 16 33 H 0.11 4.23 8.04 -2.91 -0.02 4.21 16 34 H 0.33 14.76 7.33 -89.70 -0.66 14.10 16 35 H 0.32 13.10 9.06 -89.69 -0.81 12.29 16 36 H 0.28 17.36 6.40 -92.71 -0.59 16.77 16 37 H 0.11 4.17 6.65 -2.91 -0.02 4.15 16 38 H 0.14 3.40 5.90 -2.91 -0.02 3.38 16 Total: -1.00 -67.73 305.72 1.16 -66.57 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: -0.89 Total: 36.74 kcal Atomic # 6 Polarization: -51.36 SS G_CDS: 2.88 Total: -48.49 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -1.04 Total: -96.85 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.83 Total: -11.60 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.05 Total: 53.63 kcal Total: -67.73 1.16 -66.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.904 kcal (2) G-P(sol) polarization free energy of solvation -67.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds