Wall clock time and date at job start Mon Mar 30 2020 03:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47192 * 54.99616 * 10 9 7 12 12 N 1.46896 * 109.46919 * 294.99564 * 10 9 7 13 13 C 1.50695 * 109.46942 * 174.99721 * 10 9 7 14 14 C 1.38232 * 119.99985 * 79.73009 * 13 10 9 15 15 C 1.38240 * 119.99964 * 179.78685 * 14 13 10 16 16 C 1.38231 * 119.99948 * 0.45789 * 15 14 13 17 17 C 1.50705 * 119.99726 * 179.78975 * 16 15 14 18 18 C 1.53000 * 109.47163 * 269.97764 * 17 16 15 19 19 C 1.53002 * 109.47018 * 180.02562 * 18 17 16 20 20 O 1.42899 * 109.46775 * 180.02562 * 19 18 17 21 21 C 1.38234 * 120.00094 * 359.77263 * 16 15 14 22 22 C 1.38231 * 119.99851 * 0.02562 * 21 16 15 23 23 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 25 25 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 26 26 H 1.00899 * 110.99894 * 176.04490 * 12 10 9 27 27 H 1.00900 * 111.00679 * 300.00301 * 12 10 9 28 28 H 1.07996 * 120.00338 * 359.97438 * 14 13 10 29 29 H 1.08003 * 119.99562 * 180.25074 * 15 14 13 30 30 H 1.08997 * 109.47061 * 29.97948 * 17 16 15 31 31 H 1.09001 * 109.46889 * 149.98397 * 17 16 15 32 32 H 1.09001 * 109.47025 * 300.00482 * 18 17 16 33 33 H 1.08998 * 109.47118 * 60.00229 * 18 17 16 34 34 H 1.08997 * 109.46672 * 299.99857 * 19 18 17 35 35 H 1.08998 * 109.47449 * 59.99868 * 19 18 17 36 36 H 0.96705 * 113.99619 * 179.97438 * 20 19 18 37 37 H 1.07999 * 119.99898 * 180.02562 * 21 16 15 38 38 H 1.07997 * 120.00347 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 1 2.9287 -3.5556 0.8409 12 7 3.0092 -3.6534 -1.2561 13 6 1.4957 -4.9636 0.1213 14 6 0.8901 -5.5199 -0.9899 15 6 0.2063 -6.7162 -0.8782 16 6 0.1201 -7.3512 0.3466 17 6 -0.6295 -8.6529 0.4692 18 6 -2.0954 -8.3679 0.8021 19 6 -2.8561 -9.6895 0.9272 20 8 -4.2254 -9.4232 1.2375 21 6 0.7216 -6.7925 1.4587 22 6 1.4089 -5.5985 1.3462 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5575 0.8880 25 1 0.6246 -2.5563 -0.8919 26 1 3.7169 -4.3725 -1.2535 27 1 2.3975 -3.7508 -2.0527 28 1 0.9538 -5.0216 -1.9459 29 1 -0.2633 -7.1528 -1.7472 30 1 -0.5700 -9.1966 -0.4736 31 1 -0.1867 -9.2536 1.2637 32 1 -2.1548 -7.8241 1.7449 33 1 -2.5382 -7.7672 0.0077 34 1 -2.7967 -10.2335 -0.0154 35 1 -2.4132 -10.2899 1.7218 36 1 -4.7690 -10.2175 1.3313 37 1 0.6545 -7.2889 2.4155 38 1 1.8785 -5.1617 2.2151 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260118555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:06 Heat of formation + Delta-G solvation = -74.712108 kcal Electronic energy + Delta-G solvation = -17389.105648 eV Core-core repulsion = 14615.155879 eV Total energy + Delta-G solvation = -2773.949769 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.62632 -38.18111 -37.18139 -34.96843 -34.12840 -31.86720 -30.78858 -30.18971 -27.15988 -25.45154 -23.72476 -23.12872 -22.09892 -20.94353 -18.58028 -18.29297 -17.17536 -17.02939 -16.63165 -16.33603 -16.05125 -15.69119 -15.08176 -14.74380 -14.35814 -14.27426 -14.01347 -13.85969 -13.76794 -13.21323 -12.91569 -12.77887 -12.48748 -12.36158 -12.27584 -12.00681 -11.78011 -11.66361 -11.39939 -11.21380 -10.85480 -10.54184 -9.81527 -9.55247 -9.25875 -8.13394 -6.20578 0.43355 0.51478 1.41176 1.41631 1.55856 2.45506 2.81346 3.19331 3.40305 3.87448 3.87652 3.93959 4.07621 4.08724 4.15817 4.38793 4.42878 4.48583 4.60964 4.63822 4.74148 4.78991 4.80910 4.94412 5.10782 5.17174 5.22883 5.32914 5.42756 5.52536 5.57622 5.70835 5.78420 5.86354 6.14465 6.28113 6.49385 6.80590 6.93577 6.94033 7.46393 8.98646 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.031175 B = 0.004013 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.953210 B = 6976.296088 C = 7489.608514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.008 4.008 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.507 4.507 8 H 0.061 0.939 9 C 0.047 3.953 10 C 0.144 3.856 11 H 0.069 0.931 12 N -0.828 5.828 13 C -0.122 4.122 14 C -0.130 4.130 15 C -0.118 4.118 16 C -0.095 4.095 17 C -0.064 4.064 18 C -0.118 4.118 19 C 0.077 3.923 20 O -0.603 6.603 21 C -0.117 4.117 22 C -0.129 4.129 23 H 0.260 0.740 24 H -0.013 1.013 25 H -0.011 1.011 26 H 0.340 0.660 27 H 0.337 0.663 28 H 0.116 0.884 29 H 0.139 0.861 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.398 0.602 37 H 0.142 0.858 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 -22.473 0.783 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.204 4.204 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.010 3.990 10 C 0.033 3.967 11 H 0.087 0.913 12 N -0.357 5.357 13 C -0.125 4.125 14 C -0.148 4.148 15 C -0.136 4.136 16 C -0.095 4.095 17 C -0.101 4.101 18 C -0.155 4.155 19 C -0.001 4.001 20 O -0.412 6.412 21 C -0.135 4.135 22 C -0.147 4.147 23 H 0.068 0.932 24 H 0.005 0.995 25 H 0.007 0.993 26 H 0.153 0.847 27 H 0.151 0.849 28 H 0.134 0.866 29 H 0.157 0.843 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.248 0.752 37 H 0.160 0.840 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.303 -21.000 0.956 21.062 hybrid contribution -0.477 -0.107 -0.108 0.501 sum -1.780 -21.107 0.848 21.198 Atomic orbital electron populations 1.70128 1.07720 1.27289 1.53064 1.25954 0.95699 1.03199 0.95522 0.85405 0.79073 0.79089 0.77478 1.18788 1.20698 1.20635 1.21541 0.93464 0.91427 1.48087 0.92090 1.18918 0.93190 0.92615 0.94315 1.20334 0.93631 0.89992 0.92777 0.91301 1.58742 1.18251 1.55272 1.03414 1.21125 0.99398 0.97272 0.94664 1.21049 0.98792 0.96614 0.98336 1.21227 0.99049 0.94998 0.98316 1.20065 0.98569 0.97930 0.92985 1.20433 0.92543 0.93034 1.04056 1.21496 0.94539 0.97688 1.01809 1.22246 0.81307 0.96257 1.00262 1.86461 1.21887 1.38637 1.94174 1.21263 0.97555 0.95466 0.99220 1.21230 1.00478 0.96149 0.96887 0.93152 0.99472 0.99295 0.84696 0.84901 0.86591 0.84278 0.89183 0.89056 0.92768 0.92902 0.91959 0.91862 0.75233 0.84044 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.23 13.29 21.45 0.28 -58.95 16 2 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 3 Si 0.96 46.34 29.54 68.60 2.03 48.36 16 4 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 7 C -0.51 -29.74 8.84 25.60 0.23 -29.51 16 8 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.05 2.56 4.60 29.85 0.14 2.69 16 10 C 0.14 6.12 2.93 44.17 0.13 6.25 16 11 H 0.07 2.97 8.00 -2.39 -0.02 2.95 16 12 N -0.83 -31.34 8.78 -171.82 -1.51 -32.84 16 13 C -0.12 -4.46 4.94 -19.87 -0.10 -4.56 16 14 C -0.13 -4.26 9.29 22.27 0.21 -4.05 16 15 C -0.12 -3.20 9.70 22.27 0.22 -2.99 16 16 C -0.10 -2.35 5.13 -19.87 -0.10 -2.45 16 17 C -0.06 -1.07 5.34 29.85 0.16 -0.91 16 18 C -0.12 -2.30 5.57 30.60 0.17 -2.12 16 19 C 0.08 1.11 7.05 71.98 0.51 1.61 16 20 O -0.60 -10.79 13.66 -148.98 -2.03 -12.83 16 21 C -0.12 -3.13 9.70 22.27 0.22 -2.92 16 22 C -0.13 -4.21 9.67 22.27 0.22 -3.99 16 23 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 24 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 25 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 26 H 0.34 10.65 9.06 -89.69 -0.81 9.84 16 27 H 0.34 12.29 7.35 -89.69 -0.66 11.63 16 28 H 0.12 3.74 6.68 -2.91 -0.02 3.72 16 29 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.09 1.21 8.09 -2.39 -0.02 1.19 16 31 H 0.09 1.20 8.09 -2.39 -0.02 1.18 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.40 3.01 9.12 -74.05 -0.68 2.33 16 37 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 38 H 0.12 3.80 8.04 -2.91 -0.02 3.77 16 Total: -1.00 -72.73 320.25 0.13 -72.60 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -1.08 Total: 26.60 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 2.45 Total: -42.93 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -1.22 Total: -91.79 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -2.03 Total: -12.83 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -72.73 0.13 -72.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260118555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.116 kcal (2) G-P(sol) polarization free energy of solvation -72.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds