Wall clock time and date at job start Mon Mar 30 2020 04:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47096 * 2 1 4 4 O 1.42899 * 109.46993 * 119.99385 * 2 1 3 5 5 C 1.52997 * 109.47604 * 239.99506 * 2 1 3 6 6 C 1.50699 * 109.47255 * 174.83870 * 5 2 1 7 7 C 1.38254 * 120.00243 * 94.04824 * 6 5 2 8 8 C 1.38213 * 119.99671 * 180.23107 * 7 6 5 9 9 C 1.38260 * 120.00145 * 359.80999 * 8 7 6 10 10 C 1.38210 * 119.99993 * 359.97438 * 9 8 7 11 11 C 1.38213 * 119.99705 * 273.83588 * 6 5 2 12 12 C 1.50709 * 120.00264 * 359.97438 * 11 6 5 13 13 H 1.09005 * 109.46772 * 32.97775 * 12 11 6 14 14 N 1.46899 * 109.47066 * 152.97430 * 12 11 6 15 15 C 1.52999 * 109.47198 * 272.97937 * 12 11 6 16 16 C 1.50697 * 109.47159 * 174.75334 * 15 12 11 17 17 H 1.08005 * 119.99782 * 359.97438 * 16 15 12 18 18 C 1.37881 * 120.00159 * 180.02562 * 16 15 12 19 19 N 1.31507 * 119.99623 * 359.72414 * 18 16 15 20 20 Si 1.86799 * 119.99954 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47142 * 179.72673 * 20 18 16 22 22 H 1.48506 * 109.47050 * 299.72475 * 20 18 16 23 23 H 1.48493 * 109.47110 * 59.72281 * 20 18 16 24 24 H 1.09007 * 109.46613 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47132 * 300.00436 * 1 2 3 26 26 H 1.08999 * 109.46887 * 60.00913 * 1 2 3 27 27 H 0.96703 * 114.00179 * 64.83041 * 4 2 1 28 28 H 1.08998 * 109.46720 * 54.83344 * 5 2 1 29 29 H 1.08999 * 109.47142 * 294.84042 * 5 2 1 30 30 H 1.07996 * 120.00336 * 0.05721 * 7 6 5 31 31 H 1.08002 * 119.99848 * 179.83113 * 8 7 6 32 32 H 1.07998 * 119.99793 * 179.97438 * 9 8 7 33 33 H 1.08002 * 119.99857 * 180.02562 * 10 9 8 34 34 H 1.00906 * 110.99684 * 60.00546 * 14 12 11 35 35 H 1.00897 * 110.99696 * 183.95358 * 14 12 11 36 36 H 1.09005 * 109.47200 * 54.75407 * 15 12 11 37 37 H 1.09002 * 109.47050 * 294.75224 * 15 12 11 38 38 H 0.97005 * 120.00361 * 0.27519 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0401 -0.7213 -1.2491 6 6 3.5417 -0.6115 -1.3146 7 6 4.3319 -1.6178 -0.7907 8 6 5.7091 -1.5147 -0.8466 9 6 6.2964 -0.4073 -1.4299 10 6 5.5064 0.5965 -1.9576 11 6 4.1288 0.4930 -1.9024 12 6 3.2674 1.5874 -2.4783 13 1 2.3545 1.6789 -1.8896 14 7 4.0024 2.8588 -2.4429 15 6 2.9087 1.2457 -3.9258 16 6 1.9441 2.2727 -4.4602 17 1 1.6190 3.0875 -3.8302 18 6 1.4756 2.1717 -5.7531 19 7 1.8749 1.1821 -6.5216 20 14 0.2793 3.4444 -6.4152 21 1 -0.0641 3.1162 -7.8221 22 1 -0.9555 3.4395 -5.5902 23 1 0.9064 4.7893 -6.3595 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.7832 -1.6140 1.1968 28 1 1.6032 -0.2638 -2.1367 29 1 1.7543 -1.7722 -1.2040 30 1 3.8732 -2.4829 -0.3353 31 1 6.3264 -2.2995 -0.4349 32 1 7.3725 -0.3266 -1.4731 33 1 5.9652 1.4614 -2.4136 34 1 4.8534 2.7996 -2.9818 35 1 3.4233 3.6202 -2.7640 36 1 2.4463 0.2592 -3.9624 37 1 3.8133 1.2457 -4.5340 38 1 2.4959 0.5209 -6.1776 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260291216.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:47 Heat of formation + Delta-G solvation = -75.271694 kcal Electronic energy + Delta-G solvation = -18609.283384 eV Core-core repulsion = 15835.309349 eV Total energy + Delta-G solvation = -2773.974035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.91894 -38.41145 -37.22143 -34.73275 -33.87971 -31.47612 -31.11731 -29.62265 -27.48694 -26.11539 -23.99336 -23.07455 -22.12262 -21.10195 -19.06239 -17.91633 -17.28759 -17.10597 -16.13582 -15.95590 -15.72529 -15.46594 -15.28146 -15.02947 -14.68236 -14.36249 -14.19457 -13.49694 -13.27860 -13.20029 -13.06617 -12.87876 -12.68873 -12.54203 -12.29159 -11.97521 -11.88079 -11.76098 -11.66496 -11.01759 -10.71190 -10.59734 -9.75685 -9.59004 -9.25855 -8.70888 -6.43019 0.50672 0.57057 1.50802 1.58042 1.76872 2.53226 2.89350 3.12874 3.45899 3.71726 3.82816 3.94901 4.02429 4.09567 4.17843 4.27620 4.36139 4.44903 4.50609 4.68433 4.75074 4.78434 4.86082 4.87719 5.11002 5.11956 5.18220 5.22109 5.24555 5.36818 5.62128 5.64628 5.83634 5.89929 6.11799 6.20159 6.29632 6.51880 6.58640 6.88503 7.39698 8.68526 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.019741 B = 0.007237 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.026868 B = 3868.038977 C = 4685.815797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.119 3.881 3 H 0.073 0.927 4 O -0.568 6.568 5 C -0.114 4.114 6 C -0.089 4.089 7 C -0.114 4.114 8 C -0.131 4.131 9 C -0.131 4.131 10 C -0.127 4.127 11 C -0.086 4.086 12 C 0.146 3.854 13 H 0.071 0.929 14 N -0.830 5.830 15 C 0.001 3.999 16 C -0.610 4.610 17 H 0.056 0.944 18 C -0.036 4.036 19 N -0.936 5.936 20 Si 1.115 2.885 21 H -0.288 1.288 22 H -0.268 1.268 23 H -0.268 1.268 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.386 0.614 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.118 0.882 34 H 0.333 0.667 35 H 0.344 0.656 36 H -0.012 1.012 37 H -0.020 1.020 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 -5.124 12.845 14.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.060 3.940 3 H 0.091 0.909 4 O -0.375 6.375 5 C -0.151 4.151 6 C -0.089 4.089 7 C -0.132 4.132 8 C -0.148 4.148 9 C -0.149 4.149 10 C -0.145 4.145 11 C -0.087 4.087 12 C 0.035 3.965 13 H 0.089 0.911 14 N -0.358 5.358 15 C -0.037 4.037 16 C -0.647 4.647 17 H 0.074 0.926 18 C -0.233 4.233 19 N -0.573 5.573 20 Si 0.936 3.064 21 H -0.213 1.213 22 H -0.194 1.194 23 H -0.193 1.193 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.235 0.765 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.161 0.839 31 H 0.167 0.833 32 H 0.159 0.841 33 H 0.136 0.864 34 H 0.145 0.855 35 H 0.157 0.843 36 H 0.006 0.994 37 H -0.002 1.002 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.662 -4.209 12.457 13.253 hybrid contribution 0.620 -0.932 -0.394 1.186 sum 2.282 -5.140 12.063 13.310 Atomic orbital electron populations 1.22435 0.94963 1.03584 1.02625 1.21645 0.93384 0.95585 0.83435 0.90892 1.86572 1.81012 1.27603 1.42357 1.21375 0.91814 1.02566 0.99379 1.19750 0.95935 0.94589 0.98627 1.21213 0.94006 0.98546 0.99387 1.21419 0.94980 0.98546 0.99887 1.21382 1.00575 0.94104 0.98848 1.21068 0.93164 0.99549 1.00758 1.19992 0.94686 0.95744 0.98236 1.20116 0.94360 0.87963 0.94104 0.91098 1.59289 1.09551 1.05193 1.61813 1.19766 0.94626 0.95765 0.93559 1.22337 1.29308 1.12464 1.00638 0.92579 1.27353 1.00356 1.00944 0.94689 1.70922 1.32897 1.14111 1.39385 0.82956 0.74461 0.73332 0.75620 1.21320 1.19355 1.19298 0.90458 0.91246 0.92403 0.76487 0.91914 0.88800 0.83898 0.83334 0.84069 0.86439 0.85481 0.84330 0.99413 1.00210 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.25 9.56 71.98 0.69 -3.56 16 2 C 0.12 3.32 3.35 30.59 0.10 3.42 16 3 H 0.07 2.45 7.08 -2.39 -0.02 2.43 16 4 O -0.57 -14.38 13.02 -148.98 -1.94 -16.32 16 5 C -0.11 -3.48 4.30 29.85 0.13 -3.36 16 6 C -0.09 -2.98 4.92 -19.87 -0.10 -3.08 16 7 C -0.11 -3.17 9.59 22.27 0.21 -2.96 16 8 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 9 C -0.13 -3.76 10.05 22.27 0.22 -3.54 16 10 C -0.13 -4.42 9.27 22.27 0.21 -4.22 16 11 C -0.09 -3.29 5.05 -19.86 -0.10 -3.39 16 12 C 0.15 6.18 2.30 44.17 0.10 6.29 16 13 H 0.07 3.07 5.71 -2.38 -0.01 3.06 16 14 N -0.83 -32.37 8.83 -171.79 -1.52 -33.88 16 15 C 0.00 0.07 3.70 29.85 0.11 0.18 16 16 C -0.61 -33.40 8.55 25.60 0.22 -33.18 16 17 H 0.06 2.95 7.16 -2.91 -0.02 2.93 16 18 C -0.04 -2.02 5.46 84.66 0.46 -1.56 16 19 N -0.94 -57.71 13.65 21.45 0.29 -57.42 16 20 Si 1.11 49.30 29.90 68.60 2.05 51.35 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 24 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.39 6.30 9.03 -74.06 -0.67 5.64 16 28 H 0.06 2.35 5.82 -2.39 -0.01 2.33 16 29 H 0.09 2.33 8.06 -2.39 -0.02 2.31 16 30 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 31 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 32 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 33 H 0.12 3.97 6.32 -2.91 -0.02 3.95 16 34 H 0.33 12.49 7.20 -89.69 -0.65 11.84 16 35 H 0.34 13.59 7.92 -89.70 -0.71 12.88 16 36 H -0.01 -0.69 7.02 -2.38 -0.02 -0.71 16 37 H -0.02 -1.15 8.00 -2.39 -0.02 -1.16 16 38 H 0.25 15.98 7.22 -92.70 -0.67 15.31 16 Total: -1.00 -67.37 308.00 0.53 -66.84 By element: Atomic # 1 Polarization: 42.40 SS G_CDS: -0.84 Total: 41.56 kcal Atomic # 6 Polarization: -54.59 SS G_CDS: 2.48 Total: -52.11 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -1.22 Total: -91.31 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -1.94 Total: -16.32 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 2.05 Total: 51.35 kcal Total: -67.37 0.53 -66.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260291216.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.435 kcal (2) G-P(sol) polarization free energy of solvation -67.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds