Wall clock time and date at job start Mon Mar 30 2020 04:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.50696 * 109.46951 * 240.00177 * 2 1 3 5 5 H 1.08002 * 119.99970 * 239.99785 * 4 2 1 6 6 C 1.37884 * 120.00241 * 59.99996 * 4 2 1 7 7 N 1.31509 * 119.99792 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00255 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46928 * 60.00026 * 8 6 4 10 10 H 1.48495 * 109.47323 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47268 * 300.00591 * 8 6 4 12 12 N 1.46898 * 109.47140 * 120.00406 * 2 1 3 13 13 C 1.46906 * 110.99888 * 275.00023 * 12 2 1 14 14 C 1.52993 * 109.47378 * 180.02562 * 13 12 2 15 15 C 1.53005 * 109.47212 * 59.99438 * 14 13 12 16 16 O 1.42903 * 109.47053 * 300.00036 * 14 13 12 17 17 C 1.50696 * 109.47429 * 179.97438 * 14 13 12 18 18 C 1.38238 * 119.99934 * 329.72459 * 17 14 13 19 19 C 1.38230 * 119.99909 * 179.80790 * 18 17 14 20 20 C 1.38236 * 120.00124 * 0.40080 * 19 18 17 21 21 C 1.38235 * 119.99996 * 359.85212 * 20 19 18 22 22 C 1.38235 * 119.99953 * 359.96142 * 21 20 19 23 23 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47134 * 299.99882 * 1 2 3 25 25 H 1.09006 * 109.47131 * 60.00086 * 1 2 3 26 26 H 0.97000 * 120.00111 * 179.97438 * 7 6 4 27 27 H 1.00904 * 110.99913 * 38.95089 * 12 2 1 28 28 H 1.09004 * 109.47040 * 299.99934 * 13 12 2 29 29 H 1.09000 * 109.47033 * 59.99886 * 13 12 2 30 30 H 1.08996 * 109.46524 * 60.00440 * 15 14 13 31 31 H 1.09001 * 109.46962 * 180.02562 * 15 14 13 32 32 H 1.08992 * 109.47457 * 300.00343 * 15 14 13 33 33 H 0.96698 * 113.99903 * 300.00141 * 16 14 13 34 34 H 1.08003 * 119.99426 * 359.97438 * 18 17 14 35 35 H 1.07996 * 119.99797 * 180.22954 * 19 18 17 36 36 H 1.08002 * 120.00277 * 179.83206 * 20 19 18 37 37 H 1.07997 * 120.00259 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.99843 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8279 -2.5196 -4.0083 10 1 1.8278 -0.4191 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0197 -0.6926 1.1994 13 6 2.0824 0.2225 2.3469 14 6 2.5962 -0.5329 3.5741 15 6 3.9935 -1.0852 3.2851 16 8 1.7099 -1.6130 3.8741 17 6 2.6612 0.4059 4.7511 18 6 2.9053 1.7515 4.5493 19 6 2.9610 2.6133 5.6286 20 6 2.7808 2.1282 6.9105 21 6 2.5418 0.7818 7.1127 22 6 2.4823 -0.0794 6.0331 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 0.7095 1.1619 -3.4844 27 1 1.4495 -1.4980 1.4099 28 1 2.7589 1.0461 2.1183 29 1 1.0870 0.6162 2.5525 30 1 4.6695 -0.2614 3.0563 31 1 4.3593 -1.6238 4.1593 32 1 3.9469 -1.7641 2.4337 33 1 0.8040 -1.3361 4.0681 34 1 3.0499 2.1297 3.5481 35 1 3.1481 3.6651 5.4706 36 1 2.8270 2.8011 7.7540 37 1 2.4015 0.4027 8.1142 38 1 2.2952 -1.1313 6.1911 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309570232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:14 Heat of formation + Delta-G solvation = -29.987177 kcal Electronic energy + Delta-G solvation = -18235.451915 eV Core-core repulsion = 15463.441564 eV Total energy + Delta-G solvation = -2772.010351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.83794 -37.39807 -35.32572 -32.80713 -31.82354 -30.85553 -29.44408 -27.96760 -25.25714 -24.74384 -22.89382 -22.09827 -20.14884 -19.94356 -17.45743 -16.64445 -15.98246 -15.13805 -14.94249 -14.68527 -14.48855 -14.08238 -13.63468 -13.30511 -12.94435 -12.77034 -12.45687 -12.04226 -11.90627 -11.59613 -11.43487 -11.36892 -11.13730 -10.91106 -10.76374 -10.57629 -10.46156 -10.11565 -10.04405 -9.58770 -8.98235 -8.92057 -8.70049 -8.33774 -7.18672 -5.96302 -3.99329 1.32990 1.40073 3.36459 3.40021 3.43772 3.77598 4.37297 4.48005 4.67340 4.92667 4.98610 5.11063 5.28310 5.35199 5.39673 5.50177 5.57883 5.72713 5.92790 6.00643 6.08980 6.18236 6.24392 6.32791 6.46433 6.49813 6.60433 6.69494 6.72735 6.85328 6.99747 7.11403 7.37755 7.75917 7.83709 7.90823 8.29705 8.58680 8.65190 9.07988 9.65991 11.10783 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.039107 B = 0.004713 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.814486 B = 5939.759987 C = 6140.222341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.031 0.969 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.676 5.676 13 C 0.040 3.960 14 C 0.173 3.827 15 C -0.121 4.121 16 O -0.551 6.551 17 C -0.107 4.107 18 C -0.110 4.110 19 C -0.122 4.122 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.106 4.106 23 H 0.028 0.972 24 H 0.003 0.997 25 H 0.088 0.912 26 H 0.260 0.740 27 H 0.331 0.669 28 H 0.073 0.927 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.371 0.629 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 1.409 16.923 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.306 5.306 13 C -0.091 4.091 14 C 0.132 3.868 15 C -0.178 4.178 16 O -0.356 6.356 17 C -0.108 4.108 18 C -0.128 4.128 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.124 4.124 23 H 0.047 0.953 24 H 0.022 0.978 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.149 0.851 28 H 0.091 0.909 29 H 0.038 0.962 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.218 0.782 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.351 1.257 16.494 16.877 hybrid contribution -1.267 0.239 -0.508 1.386 sum 2.084 1.496 15.986 16.191 Atomic orbital electron populations 1.22429 1.00836 0.99180 1.00333 1.19167 0.89511 0.94311 0.86639 0.95122 1.21125 1.30154 1.12401 0.89577 0.91963 1.24950 0.95357 0.95211 0.99030 1.69873 1.37398 1.23219 1.23396 0.86565 0.79175 0.79618 0.82035 1.20369 1.21517 1.20303 1.60731 1.58306 1.08841 1.02760 1.22560 0.98604 0.96258 0.91665 1.20156 0.91890 0.85139 0.89605 1.21575 0.92194 1.01802 1.02263 1.86550 1.22952 1.34089 1.91999 1.20708 0.99778 0.94738 0.95599 1.21236 0.99129 0.92925 0.99493 1.21156 1.00467 0.99683 0.92726 1.21137 1.00629 0.95647 0.96995 1.21126 1.00822 0.93708 0.98696 1.21027 0.99479 1.00131 0.91797 0.95311 0.97827 0.89322 0.93068 0.85126 0.90855 0.96229 0.91636 0.93272 0.89685 0.78243 0.85444 0.86142 0.86434 0.86335 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.94 37.16 0.33 -3.74 16 2 C 0.21 5.30 2.57 -68.87 -0.18 5.13 16 3 H 0.03 0.84 7.80 -51.93 -0.41 0.44 16 4 C -0.49 -13.71 8.84 -34.44 -0.30 -14.01 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.80 11.32 55.43 0.63 -25.18 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.68 -14.21 5.47 -107.96 -0.59 -14.80 16 13 C 0.04 0.70 3.95 -3.82 -0.02 0.68 16 14 C 0.17 2.58 0.99 -91.77 -0.09 2.49 16 15 C -0.12 -1.84 8.67 37.16 0.32 -1.52 16 16 O -0.55 -8.02 11.30 -35.23 -0.40 -8.41 16 17 C -0.11 -1.45 4.80 -104.62 -0.50 -1.95 16 18 C -0.11 -1.44 9.14 -39.58 -0.36 -1.80 16 19 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 20 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 21 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 22 C -0.11 -1.30 9.35 -39.58 -0.37 -1.67 16 23 H 0.03 0.67 8.13 -51.93 -0.42 0.24 16 24 H 0.00 0.06 7.45 -51.93 -0.39 -0.33 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.33 6.86 7.86 -39.29 -0.31 6.55 16 28 H 0.07 1.32 6.42 -51.93 -0.33 0.98 16 29 H 0.02 0.35 7.44 -51.93 -0.39 -0.04 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.45 7.60 -51.93 -0.39 1.06 16 33 H 0.37 4.40 9.04 45.56 0.41 4.82 16 34 H 0.13 1.68 6.17 -52.48 -0.32 1.35 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.13 1.46 7.48 -52.49 -0.39 1.07 16 LS Contribution 309.70 15.07 4.67 4.67 Total: -1.00 -29.27 309.70 -8.09 -37.36 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -4.92 Total: 10.00 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -2.46 Total: -20.24 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.04 Total: -39.98 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.40 Total: -8.41 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.27 -8.09 -37.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309570232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.370 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds