Wall clock time and date at job start Mon Mar 30 2020 03:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86795 * 119.99471 * 2 1 4 4 H 1.48504 * 109.47356 * 274.66146 * 3 2 1 5 5 H 1.48498 * 109.47416 * 34.66322 * 3 2 1 6 6 H 1.48508 * 109.47077 * 154.66502 * 3 2 1 7 7 C 1.39947 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99630 * 162.23547 * 7 2 1 9 9 C 1.41390 * 119.99949 * 342.23165 * 7 2 1 10 10 C 1.40718 * 120.23972 * 155.28690 * 9 7 2 11 11 C 1.37619 * 119.73961 * 180.02562 * 10 9 7 12 12 C 1.38627 * 120.25369 * 0.02716 * 11 10 9 13 13 C 1.50706 * 119.75050 * 179.97438 * 12 11 10 14 14 N 1.46900 * 109.47235 * 90.00022 * 13 12 11 15 15 C 1.46891 * 111.00138 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47507 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47303 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.47196 * 179.97438 * 17 16 15 19 19 O 1.42896 * 109.47368 * 180.02562 * 18 17 16 20 20 C 1.38640 * 120.50069 * 0.24607 * 12 11 10 21 21 C 1.37618 * 120.24388 * 359.45385 * 20 12 11 22 22 H 0.96995 * 120.00182 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.13055 * 0.02562 * 10 9 7 24 24 H 1.08008 * 119.87340 * 180.02562 * 11 10 9 25 25 H 1.08991 * 109.47027 * 329.99673 * 13 12 11 26 26 H 1.09007 * 109.46932 * 209.99973 * 13 12 11 27 27 H 1.00896 * 110.99752 * 303.95539 * 14 13 12 28 28 H 1.09006 * 109.47302 * 299.99581 * 15 14 13 29 29 H 1.08998 * 109.47405 * 59.99327 * 15 14 13 30 30 H 1.09000 * 109.47124 * 299.99999 * 16 15 14 31 31 H 1.08998 * 109.47371 * 59.99265 * 16 15 14 32 32 H 1.08994 * 109.47099 * 299.99364 * 17 16 15 33 33 H 1.08999 * 109.47427 * 59.99921 * 17 16 15 34 34 H 1.09003 * 109.47087 * 300.00557 * 18 17 16 35 35 H 1.09009 * 109.46922 * 59.99849 * 18 17 16 36 36 H 0.96704 * 113.99990 * 180.02562 * 19 18 17 37 37 H 1.07996 * 119.87661 * 179.70259 * 20 12 11 38 38 H 1.08000 * 120.12504 * 180.26979 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3911 2.1034 -1.3955 5 1 1.4923 2.6222 0.7963 6 1 3.5856 1.4139 0.5991 7 6 2.0081 -1.2120 0.0005 8 1 3.0494 -1.2343 -0.2848 9 6 1.3517 -2.4071 0.3748 10 6 1.8220 -3.6493 -0.0899 11 6 1.1749 -4.8061 0.2803 12 6 0.0637 -4.7507 1.1072 13 6 -0.6366 -6.0245 1.5051 14 7 -0.0431 -6.5429 2.7448 15 6 -0.7017 -7.7873 3.1636 16 6 -0.0583 -8.2953 4.4554 17 6 -0.7448 -9.5911 4.8919 18 6 -0.1009 -10.0993 6.1835 19 8 -0.7416 -11.3099 6.5909 20 6 -0.4118 -3.5321 1.5664 21 6 0.2231 -2.3630 1.2140 22 1 -0.4850 0.8400 -0.0004 23 1 2.6873 -3.6947 -0.7345 24 1 1.5343 -5.7607 -0.0747 25 1 -0.5247 -6.7636 0.7119 26 1 -1.6955 -5.8220 1.6662 27 1 0.9514 -6.6779 2.6407 28 1 -1.7611 -7.5975 3.3362 29 1 -0.5899 -8.5385 2.3818 30 1 1.0012 -8.4851 4.2834 31 1 -0.1705 -7.5439 5.2371 32 1 -1.8041 -9.4008 5.0642 33 1 -0.6329 -10.3426 4.1104 34 1 0.9584 -10.2895 6.0109 35 1 -0.2124 -9.3478 6.9652 36 1 -0.3839 -11.6895 7.4051 37 1 -1.2812 -3.5003 2.2062 38 1 -0.1463 -1.4151 1.5763 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398993327.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:33 Heat of formation + Delta-G solvation = -55.912124 kcal Electronic energy + Delta-G solvation = -16925.537349 eV Core-core repulsion = 14152.402808 eV Total energy + Delta-G solvation = -2773.134541 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -37.90683 -37.46732 -36.10971 -34.01442 -32.92523 -30.23450 -29.23580 -27.81256 -25.70620 -23.25699 -22.09130 -21.25255 -20.92675 -19.78954 -17.54489 -17.27706 -16.25262 -15.47330 -15.29633 -14.66235 -14.34124 -14.09216 -13.82788 -13.71797 -13.17778 -12.66743 -12.32943 -11.93016 -11.81653 -11.77350 -11.59774 -11.47701 -11.07022 -11.05440 -10.88375 -10.74676 -10.44303 -10.33245 -10.23041 -9.57491 -9.35211 -9.11300 -8.04580 -7.41785 -7.28525 -6.74719 -4.33143 2.75865 3.07495 3.10262 3.11663 3.19555 3.88348 3.94213 4.52758 4.73443 4.82638 4.87853 5.13084 5.16131 5.37800 5.53759 5.62573 5.72436 5.74821 5.84013 5.91828 5.93619 6.16722 6.21523 6.28188 6.39158 6.47949 6.98017 7.09034 7.31684 7.32490 7.38121 7.42541 7.63708 7.73834 7.91716 8.07906 8.17553 8.32403 8.66868 8.91556 9.00249 10.19988 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.050123 B = 0.003082 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.489462 B = 9083.130319 C = 9180.305455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.228 4.228 11 C -0.086 4.086 12 C -0.213 4.213 13 C 0.124 3.876 14 N -0.686 5.686 15 C 0.058 3.942 16 C -0.115 4.115 17 C -0.119 4.119 18 C 0.075 3.925 19 O -0.578 6.578 20 C -0.079 4.079 21 C -0.167 4.167 22 H 0.280 0.720 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.018 0.982 26 H 0.062 0.938 27 H 0.339 0.661 28 H 0.068 0.932 29 H 0.023 0.977 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.378 0.622 37 H 0.087 0.913 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.370 -12.498 8.363 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.247 4.247 11 C -0.104 4.104 12 C -0.215 4.215 13 C -0.003 4.003 14 N -0.317 5.317 15 C -0.071 4.071 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.003 4.003 19 O -0.383 6.383 20 C -0.098 4.098 21 C -0.187 4.187 22 H 0.091 0.909 23 H 0.108 0.892 24 H 0.100 0.900 25 H 0.036 0.964 26 H 0.080 0.920 27 H 0.156 0.844 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.225 0.775 37 H 0.105 0.895 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.326 -11.820 8.204 14.449 hybrid contribution 1.039 0.093 -0.235 1.069 sum -0.288 -11.727 7.968 14.181 Atomic orbital electron populations 1.69833 1.07588 1.29157 1.35268 1.25914 0.94713 1.01301 0.92256 0.86333 0.80789 0.80786 0.79004 1.19622 1.20037 1.18443 1.19586 0.98073 0.91333 1.40310 0.90521 1.17625 0.91077 0.91970 0.88358 1.20931 1.03817 0.92968 1.07021 1.20354 0.95666 0.96227 0.98190 1.18901 1.01457 0.92970 1.08151 1.20553 0.97716 0.93875 0.88197 1.60634 1.08045 1.28045 1.34960 1.21920 0.99189 0.90800 0.95238 1.21471 0.99581 0.95953 0.98273 1.21484 1.00757 0.97241 0.96203 1.22231 0.95566 0.85816 0.96672 1.86475 1.63676 1.41207 1.46986 1.20501 0.98273 0.92505 0.98498 1.21311 0.99385 0.96801 1.01186 0.90913 0.89163 0.89955 0.96397 0.91974 0.84352 0.91347 0.95898 0.92002 0.90840 0.91178 0.91454 0.93679 0.93508 0.77541 0.89478 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.70 10.97 55.55 0.61 -20.09 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.42 9.05 -37.74 -0.34 -12.77 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.11 3.03 5.57 -106.83 -0.60 2.43 16 10 C -0.23 -5.64 9.80 -38.87 -0.38 -6.03 16 11 C -0.09 -1.92 9.67 -39.66 -0.38 -2.30 16 12 C -0.21 -4.66 5.42 -104.33 -0.56 -5.23 16 13 C 0.12 2.23 5.80 -4.97 -0.03 2.20 16 14 N -0.69 -10.93 6.49 -115.06 -0.75 -11.67 16 15 C 0.06 0.74 5.68 -3.83 -0.02 0.72 16 16 C -0.11 -1.23 5.47 -26.73 -0.15 -1.37 16 17 C -0.12 -1.17 5.58 -26.73 -0.15 -1.32 16 18 C 0.07 0.65 7.05 37.16 0.26 0.91 16 19 O -0.58 -5.36 13.66 -35.23 -0.48 -5.84 16 20 C -0.08 -1.87 9.67 -39.66 -0.38 -2.26 16 21 C -0.17 -4.41 8.70 -38.87 -0.34 -4.75 16 22 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 23 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 24 H 0.08 1.62 8.06 -52.48 -0.42 1.20 16 25 H 0.02 0.31 8.08 -51.93 -0.42 -0.11 16 26 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 27 H 0.34 5.31 8.72 -39.29 -0.34 4.97 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 36 H 0.38 1.69 9.12 45.56 0.42 2.11 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.12 3.17 6.18 -52.49 -0.32 2.85 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -28.86 320.32 -9.27 -38.13 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.29 Total: 8.84 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -3.16 Total: -27.92 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: -0.14 Total: -31.76 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.48 Total: -5.84 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.86 -9.27 -38.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398993327.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.783 kcal (2) G-P(sol) polarization free energy of solvation -28.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds