Wall clock time and date at job start Mon Mar 30 2020 03:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 119.99935 * 2 1 4 4 H 1.48498 * 109.47499 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47367 * 300.00084 * 3 2 1 6 6 H 1.48503 * 109.47271 * 59.99686 * 3 2 1 7 7 C 1.37879 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.49888 * 60.06867 * 9 7 2 11 11 C 1.53041 * 109.49940 * 300.00574 * 9 7 2 12 12 C 1.53038 * 109.53768 * 178.68601 * 11 9 7 13 13 C 1.53187 * 109.31606 * 61.36503 * 12 11 9 14 14 N 1.46926 * 108.77227 * 305.36475 * 13 12 11 15 15 C 1.34787 * 120.62918 * 233.33389 * 14 13 12 16 16 O 1.21282 * 119.99956 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.99793 * 0.02562 * 15 14 13 18 18 H 1.08996 * 115.54945 * 34.33161 * 17 15 14 19 19 C 1.53008 * 117.49685 * 248.61831 * 17 15 14 20 20 C 1.52993 * 117.49676 * 179.97438 * 17 15 14 21 21 C 1.52996 * 138.59009 * 336.59606 * 20 17 15 22 22 C 1.52994 * 138.59038 * 238.38284 * 20 17 15 23 23 C 1.46924 * 118.73991 * 53.60881 * 14 13 12 24 24 H 0.97003 * 120.00244 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46022 * 58.65987 * 11 9 7 26 26 H 1.09007 * 109.45589 * 298.70417 * 11 9 7 27 27 H 1.08999 * 109.49677 * 301.40907 * 12 11 9 28 28 H 1.09001 * 109.52131 * 181.33314 * 12 11 9 29 29 H 1.09002 * 109.58471 * 185.57893 * 13 12 11 30 30 H 1.08996 * 109.70613 * 65.22278 * 13 12 11 31 31 H 1.08999 * 117.49559 * 0.02562 * 19 17 15 32 32 H 1.09001 * 117.49889 * 145.02476 * 19 17 15 33 33 H 1.09002 * 117.49844 * 336.59699 * 21 20 17 34 34 H 1.08999 * 117.50227 * 121.61355 * 21 20 17 35 35 H 1.09003 * 117.49947 * 238.38245 * 22 20 17 36 36 H 1.08998 * 117.49542 * 23.40117 * 22 20 17 37 37 H 1.09003 * 109.58516 * 66.18182 * 23 14 13 38 38 H 1.09002 * 109.58479 * 186.60340 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6248 -2.5577 -0.8907 11 6 0.3713 -2.5811 1.2491 12 6 -0.4190 -3.8916 1.2335 13 6 0.5570 -5.0721 1.2511 14 7 1.4998 -4.9228 0.1342 15 6 1.6810 -5.9238 -0.7500 16 8 2.4625 -5.7885 -1.6675 17 6 0.9124 -7.2112 -0.5986 18 1 -0.0992 -7.1113 -0.2052 19 6 1.7013 -8.4636 -0.2109 20 6 1.1618 -8.3089 -1.6347 21 6 1.6670 -8.4355 -3.0733 22 6 0.3668 -9.1253 -2.6556 23 6 2.2459 -3.6640 0.0030 24 1 -0.4850 0.8400 0.0004 25 1 -0.3212 -1.7394 1.2615 26 1 1.0002 -2.5469 2.1388 27 1 -1.0295 -3.9375 0.3317 28 1 -1.0631 -3.9389 2.1116 29 1 0.0041 -6.0050 1.1404 30 1 1.1051 -5.0819 2.1932 31 1 2.7761 -8.3561 -0.0649 32 1 1.2087 -9.1878 0.4380 33 1 1.5874 -7.5571 -3.7138 34 1 2.5384 -9.0667 -3.2471 35 1 0.3828 -10.2105 -2.5545 36 1 -0.5682 -8.7007 -3.0211 37 1 2.9316 -3.5563 0.8435 38 1 2.8075 -3.6677 -0.9312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597900766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:23 Heat of formation + Delta-G solvation = -0.611998 kcal Electronic energy + Delta-G solvation = -18426.956572 eV Core-core repulsion = 15656.220025 eV Total energy + Delta-G solvation = -2770.736547 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28196 -39.08360 -37.86197 -35.39102 -33.66862 -32.90863 -31.93449 -27.34511 -26.55742 -24.35009 -23.30860 -23.26456 -21.53977 -20.46427 -19.36123 -18.58412 -18.01717 -16.83578 -16.63374 -16.12986 -15.85873 -15.43252 -15.13038 -15.07836 -14.65095 -14.39925 -13.82486 -13.61649 -13.36335 -12.90961 -12.73292 -12.63017 -12.57840 -12.34783 -11.96533 -11.87456 -11.62106 -11.29118 -11.13784 -11.00763 -10.89315 -10.85404 -10.59252 -10.43213 -9.49167 -8.12827 -6.28412 1.38425 1.40470 1.50737 1.52973 2.03667 2.41819 2.75815 2.84714 3.13578 3.35001 3.63722 3.85276 4.02289 4.16747 4.25297 4.32845 4.49490 4.49874 4.61800 4.66149 4.75563 4.77098 4.81679 4.84578 4.85787 4.97573 5.02677 5.06398 5.10966 5.27400 5.29038 5.47199 5.55969 5.59444 5.90740 6.11598 6.32324 6.57451 6.81210 7.23973 7.39992 8.91155 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.037312 B = 0.005154 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.249225 B = 5431.079157 C = 5746.232234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.017 3.983 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.051 0.949 9 C 0.041 3.959 10 H -0.017 1.017 11 C -0.106 4.106 12 C -0.128 4.128 13 C 0.110 3.890 14 N -0.605 5.605 15 C 0.526 3.474 16 O -0.593 6.593 17 C -0.151 4.151 18 H 0.148 0.852 19 C -0.075 4.075 20 C -0.227 4.227 21 C -0.138 4.138 22 C -0.099 4.099 23 C 0.130 3.870 24 H 0.262 0.738 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.143 0.857 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 -17.770 3.223 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.182 4.182 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.070 0.930 9 C 0.022 3.978 10 H 0.001 0.999 11 C -0.144 4.144 12 C -0.166 4.166 13 C -0.011 4.011 14 N -0.336 5.336 15 C 0.316 3.684 16 O -0.474 6.474 17 C -0.171 4.171 18 H 0.165 0.835 19 C -0.112 4.112 20 C -0.228 4.228 21 C -0.175 4.175 22 C -0.136 4.136 23 C 0.008 3.992 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.161 0.839 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.144 0.856 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.802 -17.565 2.767 17.872 hybrid contribution 0.476 1.776 -0.372 1.876 sum -1.326 -15.789 2.395 16.024 Atomic orbital electron populations 1.70016 1.07129 1.27203 1.50930 1.25698 0.95704 1.02318 0.94475 0.85530 0.79000 0.79523 0.77751 1.19341 1.20841 1.19957 1.21470 0.93056 0.91938 1.51277 0.93033 1.18874 0.93147 0.91661 0.94119 0.99876 1.21426 0.98772 0.97153 0.97056 1.21924 0.97852 0.94996 1.01848 1.22014 0.90646 0.99710 0.88741 1.48327 1.42346 1.14536 1.28383 1.20497 0.82001 0.85224 0.80707 1.90620 1.39926 1.82562 1.34334 1.22026 1.01727 0.87136 1.06258 0.83465 1.22769 0.99458 0.95186 0.93793 1.21465 1.09408 1.02126 0.89771 1.22579 0.99155 1.01948 0.93777 1.22850 0.94864 0.99268 0.96605 1.21535 0.94542 0.82960 1.00174 0.92884 0.91920 0.94289 0.93905 0.88990 0.86777 0.89929 0.89261 0.83868 0.91026 0.87737 0.85590 0.88181 0.92053 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.99 11.31 21.45 0.24 -52.75 16 2 C 0.02 0.96 5.30 84.66 0.45 1.41 16 3 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.54 -30.57 8.56 25.60 0.22 -30.35 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.04 2.14 2.25 -11.46 -0.03 2.12 16 10 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 11 C -0.11 -4.84 4.96 30.62 0.15 -4.69 16 12 C -0.13 -4.38 6.08 30.67 0.19 -4.20 16 13 C 0.11 3.16 6.34 86.36 0.55 3.71 16 14 N -0.61 -22.83 2.97 -818.91 -2.43 -25.26 16 15 C 0.53 19.74 7.48 87.65 0.66 20.39 16 16 O -0.59 -27.44 15.66 -3.04 -0.05 -27.49 16 17 C -0.15 -3.93 5.13 -11.54 -0.06 -3.99 16 18 H 0.15 3.05 6.56 -2.39 -0.02 3.03 16 19 C -0.08 -1.49 10.24 30.61 0.31 -1.18 16 20 C -0.23 -5.45 5.06 -52.17 -0.26 -5.71 16 21 C -0.14 -3.43 10.16 30.59 0.31 -3.12 16 22 C -0.10 -1.80 10.53 30.59 0.32 -1.48 16 23 C 0.13 5.99 5.65 86.36 0.49 6.47 16 24 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 25 H 0.06 3.28 6.04 -2.39 -0.01 3.27 16 26 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.11 2.36 5.51 -2.39 -0.01 2.35 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.05 2.50 7.01 -2.39 -0.02 2.48 16 Total: -1.00 -70.70 307.43 4.12 -66.59 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 1.03 Total: 13.29 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 3.30 Total: -20.61 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -2.19 Total: -78.01 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.05 Total: -27.49 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -70.70 4.12 -66.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597900766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.975 kcal (2) G-P(sol) polarization free energy of solvation -70.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds