Wall clock time and date at job start Mon Mar 30 2020 03:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99926 * 2 1 4 4 H 1.48491 * 109.46953 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46948 * 300.00131 * 3 2 1 6 6 H 1.48501 * 109.47186 * 59.99869 * 3 2 1 7 7 C 1.37873 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99332 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00448 * 359.97438 * 7 2 1 10 10 C 1.53496 * 114.20708 * 180.02562 * 9 7 2 11 11 N 1.47064 * 87.98348 * 139.85184 * 10 9 7 12 12 C 1.34778 * 136.05636 * 152.84079 * 11 10 9 13 13 O 1.21276 * 119.99978 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99904 * 180.02562 * 12 11 10 15 15 H 1.08991 * 109.61282 * 60.35891 * 14 12 11 16 16 C 1.53297 * 109.61516 * 300.00246 * 14 12 11 17 17 C 1.52883 * 108.57981 * 165.82632 * 16 14 12 18 18 C 1.52715 * 110.15185 * 54.52145 * 17 16 14 19 19 H 1.08994 * 114.91482 * 127.84303 * 18 17 16 20 20 C 1.53652 * 116.02780 * 269.79725 * 18 17 16 21 21 C 1.52071 * 120.52121 * 338.52654 * 18 17 16 22 22 H 1.09004 * 115.92942 * 149.26166 * 21 18 17 23 23 C 1.52076 * 120.02133 * 5.29616 * 21 18 17 24 24 C 1.47064 * 87.88749 * 333.10110 * 11 10 9 25 25 H 0.97005 * 120.00492 * 359.97438 * 1 2 3 26 26 H 1.08993 * 113.27963 * 46.93417 * 9 7 2 27 27 H 1.09003 * 113.46434 * 25.07198 * 10 9 7 28 28 H 1.08999 * 113.51947 * 254.63987 * 10 9 7 29 29 H 1.08998 * 109.62098 * 46.10133 * 16 14 12 30 30 H 1.09001 * 109.62016 * 285.54920 * 16 14 12 31 31 H 1.09002 * 109.35754 * 294.31361 * 17 16 14 32 32 H 1.09001 * 109.35887 * 174.72876 * 17 16 14 33 33 H 1.08997 * 117.53953 * 4.31573 * 20 18 17 34 34 H 1.09002 * 117.60033 * 219.03446 * 20 18 17 35 35 H 1.08993 * 109.26827 * 98.56139 * 23 21 18 36 36 H 1.09000 * 109.26215 * 218.03291 * 23 21 18 37 37 H 1.09002 * 113.47124 * 141.67409 * 24 11 10 38 38 H 1.08998 * 113.46995 * 272.12121 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.1488 -3.7442 -0.0005 11 7 1.2073 -4.3593 0.9471 12 6 0.8311 -5.6139 1.2650 13 8 1.3268 -6.5597 0.6901 14 6 -0.2057 -5.8414 2.3348 15 1 -1.1395 -5.3581 2.0480 16 6 0.2890 -5.2578 3.6632 17 6 -0.8926 -5.1773 4.6300 18 6 -1.5584 -6.5453 4.7622 19 1 -1.6861 -6.8968 5.7859 20 6 -2.6954 -6.8403 3.7717 21 6 -1.3782 -7.5996 3.6812 22 1 -1.4018 -8.6361 4.0177 23 6 -0.4346 -7.3419 2.5168 24 6 0.8522 -3.0029 1.3907 25 1 -0.4851 0.8400 0.0004 26 1 0.4433 -2.5303 -0.7317 27 1 3.1373 -3.5665 0.4232 28 1 2.1885 -4.2519 -0.9643 29 1 0.6939 -4.2597 3.4963 30 1 1.0609 -5.9036 4.0818 31 1 -1.6189 -4.4569 4.2536 32 1 -0.5378 -4.8522 5.6080 33 1 -2.9009 -6.0946 3.0037 34 1 -3.5642 -7.3813 4.1467 35 1 0.5199 -7.8302 2.7125 36 1 -0.8680 -7.7528 1.6050 37 1 -0.2091 -2.8808 1.6071 38 1 1.4918 -2.6257 2.1887 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598021780.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:39 Heat of formation + Delta-G solvation = -9.327955 kcal Electronic energy + Delta-G solvation = -18457.209773 eV Core-core repulsion = 15686.095273 eV Total energy + Delta-G solvation = -2771.114500 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.60754 -40.12064 -38.61495 -34.70698 -34.21661 -31.78628 -30.88546 -27.44922 -26.76070 -25.57729 -24.15211 -22.37586 -21.78285 -19.86883 -19.44870 -18.73298 -17.94500 -17.26368 -16.62144 -16.28750 -15.82670 -15.50309 -15.16894 -14.71493 -14.46658 -14.15023 -13.98602 -13.48690 -13.27319 -13.19666 -13.02031 -12.79336 -12.60950 -12.46925 -12.18781 -12.11983 -11.96018 -11.53537 -11.30874 -11.07000 -10.70287 -10.65441 -10.57126 -10.45114 -9.57233 -8.16840 -6.28047 1.46428 1.50142 1.59533 1.61012 2.00162 2.46589 2.84785 3.13544 3.44668 3.61978 3.75159 3.96065 4.06910 4.09168 4.20602 4.26997 4.38589 4.48013 4.52360 4.54407 4.63832 4.69235 4.73767 4.83713 4.93965 4.95555 4.97354 5.09021 5.10112 5.17399 5.26400 5.27845 5.34734 5.42910 5.58916 5.81059 6.22758 6.80833 6.90291 7.15083 7.42338 8.93466 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.031889 B = 0.005305 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.847710 B = 5276.322474 C = 5795.396183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.023 3.977 3 Si 0.958 3.042 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.279 1.279 7 C -0.527 4.527 8 H 0.066 0.934 9 C 0.021 3.979 10 C 0.102 3.898 11 N -0.644 5.644 12 C 0.530 3.470 13 O -0.598 6.598 14 C -0.094 4.094 15 H 0.095 0.905 16 C -0.107 4.107 17 C -0.085 4.085 18 C -0.144 4.144 19 H 0.121 0.879 20 C -0.182 4.182 21 C -0.143 4.143 22 H 0.116 0.884 23 C -0.063 4.063 24 C 0.120 3.880 25 H 0.265 0.735 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 -9.018 10.622 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.178 4.178 3 Si 0.784 3.216 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.565 4.565 8 H 0.084 0.916 9 C 0.002 3.998 10 C -0.020 4.020 11 N -0.376 5.376 12 C 0.322 3.678 13 O -0.481 6.481 14 C -0.115 4.115 15 H 0.113 0.887 16 C -0.145 4.145 17 C -0.123 4.123 18 C -0.162 4.162 19 H 0.139 0.861 20 C -0.219 4.219 21 C -0.161 4.161 22 H 0.134 0.866 23 C -0.101 4.101 24 C -0.003 4.003 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.669 -9.607 10.386 14.616 hybrid contribution 0.326 0.902 -0.482 1.074 sum -3.343 -8.704 9.904 13.603 Atomic orbital electron populations 1.70062 1.07431 1.27824 1.50360 1.25746 0.95546 1.02512 0.93973 0.85498 0.79217 0.79354 0.77546 1.18840 1.21013 1.20436 1.21222 0.93313 0.90413 1.51559 0.91553 1.20197 0.94541 0.91793 0.93302 1.23236 0.94660 0.92148 0.91954 1.50013 1.42027 1.05268 1.40339 1.20904 0.83307 0.80126 0.83491 1.90596 1.59475 1.41713 1.56274 1.21273 0.96921 0.99350 0.93917 0.88690 1.21569 0.99078 1.00883 0.92976 1.21057 0.96082 0.95417 0.99724 1.22325 1.01796 0.96016 0.96109 0.86061 1.23212 0.92436 1.03735 1.02537 1.21802 0.98412 0.98047 0.97842 0.86600 1.20563 0.99280 0.92574 0.97641 1.23237 0.99726 0.76791 1.00519 0.92617 0.94508 0.89816 0.92821 0.91801 0.91243 0.91557 0.89509 0.89721 0.87251 0.91763 0.92177 0.92279 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.89 13.26 21.45 0.28 -49.61 16 2 C 0.02 1.15 5.46 84.65 0.46 1.62 16 3 Si 0.96 40.45 29.54 68.60 2.03 42.48 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.53 -26.63 8.84 25.60 0.23 -26.40 16 8 H 0.07 3.25 7.81 -2.91 -0.02 3.23 16 9 C 0.02 0.99 3.76 -11.29 -0.04 0.95 16 10 C 0.10 4.35 8.18 83.18 0.68 5.03 16 11 N -0.64 -26.36 3.59 -858.84 -3.09 -29.45 16 12 C 0.53 21.02 7.41 87.66 0.65 21.67 16 13 O -0.60 -27.33 16.70 -3.02 -0.05 -27.38 16 14 C -0.09 -2.85 2.15 -11.48 -0.02 -2.88 16 15 H 0.10 2.87 7.12 -2.39 -0.02 2.85 16 16 C -0.11 -2.81 5.21 30.65 0.16 -2.65 16 17 C -0.09 -1.77 5.83 30.46 0.18 -1.59 16 18 C -0.14 -2.67 6.19 -10.98 -0.07 -2.74 16 19 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 20 C -0.18 -3.44 9.66 30.58 0.30 -3.14 16 21 C -0.14 -2.95 6.00 -11.63 -0.07 -3.01 16 22 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 23 C -0.06 -1.71 4.58 30.25 0.14 -1.57 16 24 C 0.12 4.95 6.33 83.09 0.53 5.48 16 25 H 0.26 13.64 8.31 -92.70 -0.77 12.87 16 26 H 0.04 1.95 8.11 -2.39 -0.02 1.94 16 27 H 0.08 3.36 8.10 -2.39 -0.02 3.34 16 28 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.06 1.83 6.04 -2.39 -0.01 1.81 16 30 H 0.07 1.79 8.04 -2.39 -0.02 1.77 16 31 H 0.07 1.43 8.06 -2.39 -0.02 1.41 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.80 7.27 -2.39 -0.02 1.78 16 34 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.87 7.95 -2.39 -0.02 1.85 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.08 3.28 7.94 -2.39 -0.02 3.26 16 Total: -1.00 -59.27 305.76 3.31 -55.96 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 1.03 Total: 17.24 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 3.11 Total: -9.25 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -2.80 Total: -79.06 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -59.27 3.31 -55.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598021780.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.633 kcal (2) G-P(sol) polarization free energy of solvation -59.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds