Wall clock time and date at job start Mon Mar 30 2020 03:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99899 * 2 1 4 4 H 1.48503 * 109.47031 * 240.00506 * 3 2 1 5 5 H 1.48503 * 109.47034 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47133 * 120.00262 * 3 2 1 7 7 C 1.37875 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00028 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.53946 * 113.74187 * 180.02562 * 9 7 2 11 11 N 1.47580 * 86.24073 * 221.98793 * 10 9 7 12 12 C 1.34781 * 134.49338 * 204.69863 * 11 10 9 13 13 O 1.21278 * 119.99994 * 359.97438 * 12 11 10 14 14 C 1.50694 * 119.99819 * 179.97438 * 12 11 10 15 15 H 1.08998 * 115.55364 * 34.32575 * 14 12 11 16 16 C 1.53007 * 117.49882 * 248.61605 * 14 12 11 17 17 C 1.52999 * 60.00089 * 252.50948 * 16 14 12 18 18 H 1.09004 * 117.51610 * 107.47484 * 17 16 14 19 19 C 1.52996 * 117.49928 * 252.50899 * 17 16 14 20 20 C 1.53787 * 113.61203 * 227.75722 * 19 17 16 21 21 C 1.53950 * 87.02022 * 220.04845 * 20 19 17 22 22 C 1.53782 * 113.61281 * 130.15543 * 19 17 16 23 23 C 1.47927 * 90.87593 * 24.63353 * 11 10 9 24 24 H 0.96998 * 120.00253 * 0.02562 * 1 2 3 25 25 H 1.09005 * 113.01383 * 311.65557 * 9 7 2 26 26 H 1.09002 * 113.76900 * 336.34495 * 10 9 7 27 27 H 1.09000 * 113.76969 * 107.62917 * 10 9 7 28 28 H 1.08993 * 117.49718 * 0.02562 * 16 14 12 29 29 H 1.09004 * 117.49240 * 145.01983 * 16 14 12 30 30 H 1.08991 * 112.85374 * 358.95629 * 19 17 16 31 31 H 1.09001 * 113.61688 * 334.56966 * 20 19 17 32 32 H 1.09004 * 113.61118 * 105.46638 * 20 19 17 33 33 H 1.08994 * 113.53765 * 270.80901 * 21 20 19 34 34 H 1.09001 * 113.66584 * 139.93516 * 21 20 19 35 35 H 1.08993 * 113.61560 * 254.52318 * 22 19 17 36 36 H 1.08997 * 113.61647 * 25.42821 * 22 19 17 37 37 H 1.09004 * 113.77332 * 221.05836 * 23 11 10 38 38 H 1.08998 * 113.87432 * 89.67721 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.1616 -3.7405 -0.0016 11 7 1.2225 -4.3094 -0.9877 12 6 0.8857 -5.5606 -1.3588 13 8 1.4136 -6.5138 -0.8263 14 6 -0.1468 -5.7750 -2.4353 15 1 -0.1563 -5.0316 -3.2324 16 6 -1.4884 -6.3801 -2.0170 17 6 -0.4855 -7.2188 -2.8118 18 1 0.0388 -8.0135 -2.2810 19 6 -0.8121 -7.5084 -4.2781 20 6 -0.6406 -8.9864 -4.6671 21 6 -0.0384 -8.4845 -5.9921 22 6 0.3473 -7.1997 -5.2401 23 6 0.8003 -2.9535 -1.4018 24 1 -0.4850 0.8400 -0.0004 25 1 0.4602 -2.5353 0.7476 26 1 3.1585 -3.5541 -0.4009 27 1 2.1771 -4.2738 0.9489 28 1 -1.6243 -6.6226 -0.9631 29 1 -2.3808 -6.0346 -2.5388 30 1 -1.7650 -7.0822 -4.5918 31 1 0.0710 -9.5233 -4.0398 32 1 -1.5843 -9.5182 -4.7890 33 1 -0.7800 -8.3263 -6.7750 34 1 0.8190 -9.0660 -6.3311 35 1 0.2000 -6.2912 -5.8239 36 1 1.3294 -7.2472 -4.7697 37 1 -0.2725 -2.8595 -1.5699 38 1 1.3961 -2.5343 -2.2126 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598025270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:30 Heat of formation + Delta-G solvation = 15.757852 kcal Electronic energy + Delta-G solvation = -17844.356476 eV Core-core repulsion = 15074.329778 eV Total energy + Delta-G solvation = -2770.026697 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29408 -40.03087 -38.68879 -36.49020 -34.62867 -31.05680 -27.78556 -26.86641 -26.78021 -26.44874 -24.40739 -22.19321 -21.55857 -20.26317 -19.63105 -18.78391 -18.00550 -17.02680 -16.59094 -16.49464 -16.17793 -15.81908 -15.05145 -14.55546 -14.21953 -13.97537 -13.42988 -13.34632 -13.30901 -13.25171 -13.10632 -12.79207 -12.69206 -12.58252 -12.23453 -11.89808 -11.55263 -11.41294 -11.37093 -11.16847 -10.87648 -10.82276 -10.62029 -10.49805 -9.56705 -8.16299 -6.27943 1.47927 1.48944 1.49971 1.57269 1.95709 2.46299 2.80314 3.14258 3.39403 3.64383 3.75635 3.87540 3.96283 4.07542 4.15185 4.25314 4.29443 4.42904 4.48484 4.52744 4.63408 4.72930 4.83504 4.85612 4.89420 4.91493 4.94811 4.99447 5.11304 5.12861 5.14435 5.25386 5.39437 5.58504 5.66626 5.80776 6.22087 6.79572 6.87520 7.16370 7.42154 8.93295 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.037106 B = 0.004257 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.411506 B = 6575.939476 C = 6775.923872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.023 3.977 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.024 3.976 10 C 0.105 3.895 11 N -0.640 5.640 12 C 0.546 3.454 13 O -0.602 6.602 14 C -0.190 4.190 15 H 0.130 0.870 16 C -0.138 4.138 17 C -0.098 4.098 18 H 0.095 0.905 19 C -0.080 4.080 20 C -0.132 4.132 21 C -0.135 4.135 22 C -0.142 4.142 23 C 0.122 3.878 24 H 0.265 0.735 25 H 0.036 0.964 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 -11.349 -10.946 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.083 0.917 9 C 0.005 3.995 10 C -0.017 4.017 11 N -0.372 5.372 12 C 0.338 3.662 13 O -0.486 6.486 14 C -0.211 4.211 15 H 0.148 0.852 16 C -0.175 4.175 17 C -0.116 4.116 18 H 0.113 0.887 19 C -0.098 4.098 20 C -0.169 4.169 21 C -0.172 4.172 22 C -0.179 4.179 23 C 0.000 4.000 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.149 0.851 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.596 -11.903 -10.731 16.425 hybrid contribution 0.576 1.084 0.453 1.308 sum -3.020 -10.820 -10.278 15.226 Atomic orbital electron populations 1.70044 1.07360 1.27953 1.50154 1.25738 0.95575 1.02452 0.93969 0.85612 0.78349 0.78717 0.78987 1.19267 1.21141 1.19786 1.21239 0.93328 0.90669 1.51944 0.91700 1.20393 0.94200 0.91797 0.93140 1.23401 0.94630 0.92629 0.91041 1.50471 1.41835 1.05083 1.39821 1.20058 0.82717 0.80789 0.82597 1.90582 1.57939 1.41468 1.58587 1.22129 0.98173 1.00613 1.00185 0.85219 1.23162 0.91886 1.01336 1.01131 1.22395 1.01056 0.91067 0.97126 0.88656 1.22266 0.99610 0.98051 0.89862 1.22971 1.01679 0.95048 0.97210 1.22841 1.01192 0.96495 0.96720 1.22922 0.98018 0.99023 0.97946 1.23517 0.99474 0.76496 1.00552 0.92587 0.94584 0.89937 0.92212 0.89623 0.85118 0.87289 0.90876 0.90013 0.88721 0.91232 0.91032 0.91818 0.91576 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.93 13.27 21.45 0.28 -49.65 16 2 C 0.02 1.19 5.46 84.65 0.46 1.66 16 3 Si 0.96 40.70 29.54 68.60 2.03 42.73 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.53 -27.28 8.77 25.60 0.22 -27.06 16 8 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 9 C 0.02 1.15 3.62 -10.89 -0.04 1.11 16 10 C 0.11 4.54 8.38 86.48 0.72 5.27 16 11 N -0.64 -26.96 3.62 -833.35 -3.02 -29.98 16 12 C 0.55 22.28 7.84 87.65 0.69 22.97 16 13 O -0.60 -28.15 16.99 -3.02 -0.05 -28.20 16 14 C -0.19 -5.88 5.50 -11.54 -0.06 -5.95 16 15 H 0.13 3.69 8.14 -2.39 -0.02 3.67 16 16 C -0.14 -3.53 9.92 30.60 0.30 -3.23 16 17 C -0.10 -2.53 5.04 -10.79 -0.05 -2.59 16 18 H 0.10 2.88 7.50 -2.38 -0.02 2.86 16 19 C -0.08 -1.54 3.87 -10.27 -0.04 -1.58 16 20 C -0.13 -2.22 7.65 31.18 0.24 -1.98 16 21 C -0.14 -2.09 8.09 31.18 0.25 -1.84 16 22 C -0.14 -2.79 7.49 31.12 0.23 -2.56 16 23 C 0.12 5.17 8.19 86.41 0.71 5.88 16 24 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 25 H 0.04 1.92 8.13 -2.38 -0.02 1.90 16 26 H 0.08 3.39 8.09 -2.39 -0.02 3.37 16 27 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.13 2.57 8.13 -2.38 -0.02 2.55 16 30 H 0.11 1.77 8.07 -2.39 -0.02 1.75 16 31 H 0.07 1.37 7.98 -2.39 -0.02 1.35 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 37 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.08 3.31 8.09 -2.39 -0.02 3.29 16 Total: -1.00 -60.52 319.90 3.90 -56.63 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 1.02 Total: 18.37 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 3.64 Total: -9.90 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -2.73 Total: -79.63 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.05 Total: -28.20 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -60.52 3.90 -56.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598025270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.383 kcal (2) G-P(sol) polarization free energy of solvation -60.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds