Wall clock time and date at job start Mon Mar 30 2020 04:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47152 * 79.24075 * 3 2 1 5 5 C 1.50698 * 109.46931 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99808 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00023 * 180.02562 * 5 4 3 8 8 C 1.46919 * 120.63255 * 179.97438 * 7 5 4 9 9 C 1.53195 * 108.89273 * 126.34238 * 8 7 5 10 10 C 1.53346 * 109.14901 * 54.57640 * 9 8 7 11 11 C 1.53004 * 109.41904 * 178.67276 * 10 9 8 12 12 C 1.50701 * 109.47085 * 295.13082 * 11 10 9 13 13 H 1.07998 * 120.00293 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99472 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99503 * 180.02562 * 14 12 11 16 16 Si 1.86791 * 120.00349 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47408 * 90.00025 * 16 14 12 18 18 H 1.48502 * 109.47396 * 210.00023 * 16 14 12 19 19 H 1.48495 * 109.47355 * 329.99898 * 16 14 12 20 20 C 1.53034 * 109.61010 * 298.71225 * 10 9 8 21 21 C 1.46933 * 120.62741 * 0.02562 * 7 5 4 22 22 H 4.44652 * 5.63343 * 180.02562 * 4 1 2 23 23 H 1.08996 * 109.47197 * 319.24069 * 3 2 1 24 24 H 1.09001 * 109.46981 * 199.24088 * 3 2 1 25 25 H 1.09001 * 109.46646 * 59.99743 * 4 3 2 26 26 H 1.09001 * 109.47188 * 299.99886 * 4 3 2 27 27 H 1.09002 * 109.58751 * 246.20189 * 8 7 5 28 28 H 1.08996 * 109.58750 * 6.48373 * 8 7 5 29 29 H 1.08997 * 109.49914 * 174.65962 * 9 8 7 30 30 H 1.09002 * 109.49585 * 294.75599 * 9 8 7 31 31 H 1.09001 * 109.42242 * 58.75065 * 10 9 8 32 32 H 1.09001 * 109.46592 * 55.13132 * 11 10 9 33 33 H 1.08997 * 109.47133 * 175.12697 * 11 10 9 34 34 H 0.97004 * 120.00347 * 180.02562 * 15 14 12 35 35 H 1.08994 * 109.50232 * 301.42239 * 20 10 9 36 36 H 1.09007 * 109.52628 * 181.33900 * 20 10 9 37 37 H 1.08994 * 109.58580 * 353.38021 * 21 7 5 38 38 H 1.09006 * 109.57831 * 113.65514 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1562 -0.2684 -1.4172 5 6 4.6632 -0.2671 -1.4172 6 8 5.2694 -0.0708 -0.3853 7 7 5.3372 -0.4841 -2.5640 8 6 6.8063 -0.4853 -2.5801 9 6 7.2944 -1.7929 -3.2115 10 6 6.6476 -1.9571 -4.5921 11 6 7.1565 -3.2451 -5.2424 12 6 8.6360 -3.1256 -5.5032 13 1 9.1607 -2.2213 -5.2326 14 6 9.3195 -4.1709 -6.0872 15 7 10.6107 -4.0668 -6.3143 16 14 8.4118 -5.7347 -6.5559 17 1 7.9054 -5.6153 -7.9468 18 1 9.3386 -6.8915 -6.4642 19 1 7.2698 -5.9408 -5.6294 20 6 5.1264 -2.0286 -4.4414 21 6 4.6167 -0.7228 -3.8221 22 1 -1.0499 0.0002 -0.0001 23 1 3.0097 -0.7776 0.6709 24 1 3.0089 0.9711 0.3387 25 1 2.7924 0.5099 -2.0881 26 1 2.7933 -1.2388 -1.7558 27 1 7.1660 0.3602 -3.1665 28 1 7.1830 -0.4091 -1.5601 29 1 8.3790 -1.7642 -3.3152 30 1 7.0114 -2.6318 -2.5756 31 1 6.9107 -1.1052 -5.2192 32 1 6.9720 -4.0866 -4.5746 33 1 6.6334 -3.4076 -6.1848 34 1 11.0917 -4.8020 -6.7256 35 1 4.8638 -2.8653 -3.7941 36 1 4.6694 -2.1691 -5.4210 37 1 3.5486 -0.8058 -3.6214 38 1 4.7962 0.1047 -4.5086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701183398.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:35 Heat of formation + Delta-G solvation = -25.021570 kcal Electronic energy + Delta-G solvation = -17884.438006 eV Core-core repulsion = 15112.642980 eV Total energy + Delta-G solvation = -2771.795026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.24311 -38.81537 -35.80455 -35.69065 -34.06942 -32.52280 -31.53947 -30.30073 -26.79589 -25.67001 -23.89325 -23.04001 -21.16251 -19.85101 -19.14957 -18.81459 -17.82646 -16.88247 -16.83966 -16.35146 -15.37232 -15.31916 -15.10929 -14.97307 -14.52123 -14.19766 -14.15264 -14.03494 -13.60265 -13.24928 -13.10156 -12.83278 -12.59189 -12.36718 -12.12210 -12.01969 -11.71179 -11.37496 -11.22961 -11.12884 -11.00249 -10.99577 -10.74179 -10.66817 -9.60618 -8.25575 -6.27760 1.35883 1.38471 1.49454 1.61951 1.78669 1.95642 2.15779 2.38091 3.10135 3.36702 3.76492 3.90260 4.03512 4.05991 4.15831 4.17961 4.25944 4.41559 4.49509 4.64519 4.69956 4.83019 4.87560 4.95360 4.96492 5.05175 5.10372 5.20053 5.21062 5.24779 5.31550 5.45913 5.60843 5.72753 5.76090 6.34281 6.46870 6.73142 6.80551 7.16297 7.36202 8.91138 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.038948 B = 0.004247 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.739166 B = 6591.575412 C = 6978.220442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.221 4.221 3 C 0.004 3.996 4 C -0.123 4.123 5 C 0.509 3.491 6 O -0.590 6.590 7 N -0.608 5.608 8 C 0.117 3.883 9 C -0.112 4.112 10 C -0.071 4.071 11 C -0.007 4.007 12 C -0.519 4.519 13 H 0.036 0.964 14 C -0.001 4.001 15 N -0.955 5.955 16 Si 0.948 3.052 17 H -0.265 1.265 18 H -0.290 1.290 19 H -0.248 1.248 20 C -0.127 4.127 21 C 0.108 3.892 22 H 0.247 0.753 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.012 0.988 33 H 0.021 0.979 34 H 0.263 0.737 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.508 7.315 6.932 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.221 4.221 3 C -0.033 4.033 4 C -0.163 4.163 5 C 0.300 3.700 6 O -0.471 6.471 7 N -0.340 5.340 8 C -0.006 4.006 9 C -0.150 4.150 10 C -0.089 4.089 11 C -0.045 4.045 12 C -0.557 4.557 13 H 0.054 0.946 14 C -0.197 4.197 15 N -0.597 5.597 16 Si 0.772 3.228 17 H -0.190 1.190 18 H -0.216 1.216 19 H -0.172 1.172 20 C -0.165 4.165 21 C -0.014 4.014 22 H 0.263 0.737 23 H 0.101 0.899 24 H 0.105 0.895 25 H 0.139 0.861 26 H 0.134 0.866 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.030 0.970 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.136 0.864 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.044 7.334 7.388 23.479 hybrid contribution 0.722 -0.861 -0.338 1.173 sum -20.323 6.473 7.050 22.464 Atomic orbital electron populations 1.25698 0.96730 0.99873 0.98845 1.23291 0.94839 1.01710 1.02217 1.18313 0.84507 1.03791 0.96695 1.21618 0.89182 1.06520 0.98940 1.21216 0.91360 0.75177 0.82284 1.90669 1.71553 1.51817 1.33037 1.48283 1.06726 1.69721 1.09288 1.21499 0.79983 0.97641 1.01440 1.21799 1.00222 0.96514 0.96485 1.20992 0.94857 0.98002 0.95091 1.19590 0.93964 0.95160 0.95749 1.21512 0.94260 1.01282 1.38642 0.94599 1.26017 0.95491 1.02497 0.95651 1.70079 1.09759 1.33995 1.45821 0.85691 0.79005 0.78457 0.79663 1.19032 1.21609 1.17154 1.22005 0.94651 0.97797 1.02076 1.22037 0.97591 0.97596 0.84169 0.73671 0.89943 0.89519 0.86080 0.86643 0.90924 0.90769 0.92658 0.93385 0.92306 0.96987 0.96052 0.92776 0.92040 0.89032 0.86427 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.74 19.25 74.32 1.43 -1.31 16 2 C -0.22 -3.91 13.34 31.13 0.42 -3.50 16 3 C 0.00 0.07 4.99 28.79 0.14 0.22 16 4 C -0.12 -2.03 4.00 29.85 0.12 -1.92 16 5 C 0.51 12.96 7.70 87.66 0.67 13.63 16 6 O -0.59 -19.84 15.39 -3.03 -0.05 -19.88 16 7 N -0.61 -15.33 2.97 -818.81 -2.43 -17.76 16 8 C 0.12 3.57 6.42 86.36 0.55 4.13 16 9 C -0.11 -4.05 5.21 30.78 0.16 -3.89 16 10 C -0.07 -2.50 2.10 -10.66 -0.02 -2.52 16 11 C -0.01 -0.32 3.52 29.85 0.10 -0.22 16 12 C -0.52 -29.10 8.94 25.60 0.23 -28.87 16 13 H 0.04 2.21 7.30 -2.91 -0.02 2.19 16 14 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 15 N -0.96 -60.04 13.96 21.45 0.30 -59.74 16 16 Si 0.95 44.00 27.47 68.60 1.88 45.88 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 19 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 20 C -0.13 -3.16 5.37 30.69 0.16 -3.00 16 21 C 0.11 2.04 6.34 86.38 0.55 2.58 16 22 H 0.25 1.51 7.80 -4.42 -0.03 1.47 16 23 H 0.08 1.70 8.10 -2.39 -0.02 1.68 16 24 H 0.09 1.70 8.10 -2.39 -0.02 1.68 16 25 H 0.12 1.43 7.94 -2.39 -0.02 1.41 16 26 H 0.12 1.54 7.69 -2.39 -0.02 1.52 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.07 2.45 7.00 -2.39 -0.02 2.43 16 29 H 0.05 2.34 6.93 -2.39 -0.02 2.32 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 33 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 34 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.12 1.39 5.93 -2.39 -0.01 1.37 16 38 H 0.08 1.42 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -72.02 311.94 5.65 -66.37 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.96 Total: 9.35 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 4.99 Total: -24.22 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -2.13 Total: -77.50 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.88 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.88 kcal Total: -72.02 5.65 -66.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701183398.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.346 kcal (2) G-P(sol) polarization free energy of solvation -72.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds