Wall clock time and date at job start Mon Mar 30 2020 04:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47374 * 267.77628 * 3 2 1 5 5 C 1.53003 * 109.47572 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47388 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47232 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99910 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00280 * 179.97438 * 7 6 5 10 10 C 1.47426 * 125.64489 * 0.04405 * 9 7 6 11 11 C 1.54914 * 104.82992 * 204.09098 * 10 9 7 12 12 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 13 13 H 1.09000 * 110.69068 * 277.04987 * 12 11 10 14 14 C 1.50696 * 110.85075 * 153.69831 * 12 11 10 15 15 H 1.08002 * 119.99956 * 246.53845 * 14 12 11 16 16 C 1.37881 * 120.00015 * 66.54004 * 14 12 11 17 17 N 1.31515 * 119.99624 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00164 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47056 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47140 * 119.99780 * 18 16 14 21 21 H 1.48496 * 109.47367 * 240.00382 * 18 16 14 22 22 C 1.47018 * 125.64993 * 180.02562 * 9 7 6 23 23 H 4.44652 * 5.63266 * 179.97438 * 4 1 2 24 24 H 1.08997 * 109.47103 * 147.77063 * 3 2 1 25 25 H 1.09004 * 109.46869 * 27.77655 * 3 2 1 26 26 H 1.09001 * 109.47259 * 60.00127 * 4 3 2 27 27 H 1.09004 * 109.47145 * 299.99858 * 4 3 2 28 28 H 1.09001 * 109.46665 * 59.99837 * 5 4 3 29 29 H 1.08994 * 109.46804 * 300.00165 * 5 4 3 30 30 H 1.09001 * 109.47080 * 60.00423 * 6 5 4 31 31 H 1.09003 * 109.47031 * 300.00271 * 6 5 4 32 32 H 1.08999 * 110.36956 * 322.93474 * 10 9 7 33 33 H 1.09001 * 110.36709 * 85.14667 * 10 9 7 34 34 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 35 35 H 1.09000 * 111.00165 * 204.88167 * 11 10 9 36 36 H 0.97008 * 119.99755 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.88241 * 298.39592 * 22 9 7 38 38 H 1.09000 * 109.88049 * 59.40721 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 0.0569 1.4413 5 6 4.6860 0.0569 1.4414 6 6 5.1960 0.1137 2.8828 7 6 6.7030 0.1131 2.8828 8 8 7.3094 0.0718 1.8333 9 7 7.3769 0.1596 4.0491 10 6 6.7690 0.2126 5.3911 11 6 7.8507 0.8603 6.2911 12 6 9.1544 0.2533 5.7020 13 1 9.3392 -0.7378 6.1162 14 6 10.3294 1.1639 5.9491 15 1 10.8227 1.6465 5.1183 16 6 10.7749 1.3807 7.2358 17 7 10.1745 0.7925 8.2474 18 14 12.2319 2.5088 7.5422 19 1 12.7258 3.0421 6.2472 20 1 11.8109 3.6358 8.4128 21 1 13.3168 1.7459 8.2099 22 6 8.8399 0.1653 4.1937 23 1 -1.0500 0.0002 -0.0001 24 1 3.0089 0.8701 -0.5480 25 1 3.0097 -0.9085 -0.4789 26 1 2.7931 -0.8127 1.9893 27 1 2.7923 0.9660 1.9203 28 1 5.0493 0.9262 0.8933 29 1 5.0493 -0.8524 0.9626 30 1 4.8328 -0.7554 3.4312 31 1 4.8326 1.0233 3.3611 32 1 5.8695 0.8281 5.3761 33 1 6.5340 -0.7926 5.7411 34 1 7.8461 1.9454 6.1883 35 1 7.7184 0.5682 7.3329 36 1 10.4881 0.9448 9.1526 37 1 9.2568 -0.7535 3.7813 38 1 9.2602 1.0278 3.6763 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701190308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:10 Heat of formation + Delta-G solvation = -26.517435 kcal Electronic energy + Delta-G solvation = -17380.738063 eV Core-core repulsion = 14608.878172 eV Total energy + Delta-G solvation = -2771.859891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.94242 -38.49568 -36.94233 -34.96777 -34.07072 -32.26090 -30.70134 -29.97843 -27.24202 -25.66425 -23.73135 -22.18761 -21.46705 -20.06056 -18.84300 -18.67762 -17.84454 -17.15180 -16.59985 -16.46857 -16.10323 -15.30782 -15.09512 -14.46376 -14.36433 -14.15223 -13.97714 -13.47723 -13.09570 -13.04676 -12.93703 -12.71805 -12.62924 -12.53562 -12.29349 -12.12958 -11.62797 -11.54107 -11.36711 -11.10562 -10.97084 -10.94186 -10.74328 -10.51895 -9.55042 -8.17520 -6.26328 1.40455 1.43553 1.54210 1.69410 1.90715 1.96075 2.16401 2.43645 3.14520 3.48101 3.69266 3.99345 4.05641 4.09546 4.29577 4.40328 4.45244 4.49236 4.50471 4.66361 4.66898 4.81284 4.82007 4.89471 4.93419 5.11200 5.13762 5.24374 5.28165 5.36548 5.37009 5.48292 5.57689 5.76699 5.86525 6.27812 6.70675 6.75198 6.80207 7.22155 7.41204 8.92087 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.056398 B = 0.003373 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.350747 B = 8298.475582 C = 8518.818417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.216 4.216 3 C -0.018 4.018 4 C -0.103 4.103 5 C -0.098 4.098 6 C -0.125 4.125 7 C 0.512 3.488 8 O -0.598 6.598 9 N -0.617 5.617 10 C 0.103 3.897 11 C -0.105 4.105 12 C 0.038 3.962 13 H 0.018 0.982 14 C -0.535 4.535 15 H 0.049 0.951 16 C 0.021 3.979 17 N -0.912 5.912 18 Si 0.953 3.047 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.279 1.279 22 C 0.119 3.881 23 H 0.242 0.758 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.264 0.736 37 H 0.041 0.959 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.118 -1.329 -8.681 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.216 4.216 3 C -0.054 4.054 4 C -0.140 4.140 5 C -0.136 4.136 6 C -0.165 4.165 7 C 0.303 3.697 8 O -0.480 6.480 9 N -0.350 5.350 10 C -0.018 4.018 11 C -0.143 4.143 12 C 0.019 3.981 13 H 0.036 0.964 14 C -0.573 4.573 15 H 0.067 0.933 16 C -0.179 4.179 17 N -0.550 5.550 18 Si 0.779 3.221 19 H -0.197 1.197 20 H -0.203 1.203 21 H -0.205 1.205 22 C -0.004 4.004 23 H 0.259 0.741 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -16.832 -1.375 -9.097 19.182 hybrid contribution 1.144 0.488 0.373 1.298 sum -15.688 -0.887 -8.723 17.972 Atomic orbital electron populations 1.25690 0.96929 1.00639 0.99956 1.23703 0.95502 1.01047 1.01319 1.18807 0.84144 1.04019 0.98444 1.21447 0.93614 1.03380 0.95566 1.21280 0.95027 1.02800 0.94538 1.21702 0.87875 1.06321 1.00578 1.21330 0.91884 0.75115 0.81364 1.90633 1.71999 1.53136 1.32212 1.48868 1.07478 1.71466 1.07144 1.22556 0.97041 1.01599 0.80623 1.22599 0.94433 0.98707 0.98608 1.19670 0.94126 0.95869 0.88431 0.96352 1.21344 1.15001 1.28283 0.92654 0.93307 1.25638 0.99152 0.97153 0.95930 1.70035 1.41898 1.43879 0.99213 0.85574 0.79549 0.78892 0.78056 1.19729 1.20264 1.20511 1.21955 0.80399 0.98906 0.99101 0.74146 0.89107 0.89020 0.90772 0.90888 0.92202 0.92024 0.86715 0.86898 0.88092 0.90350 0.93519 0.91296 0.92711 0.94093 0.94173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.35 19.25 74.32 1.43 -1.91 16 2 C -0.22 -3.91 13.34 31.12 0.42 -3.50 16 3 C -0.02 -0.28 5.70 28.79 0.16 -0.11 16 4 C -0.10 -1.59 5.17 30.59 0.16 -1.43 16 5 C -0.10 -2.01 4.50 30.59 0.14 -1.87 16 6 C -0.13 -2.74 4.71 29.85 0.14 -2.60 16 7 C 0.51 17.56 7.85 87.66 0.69 18.24 16 8 O -0.60 -25.28 16.31 -3.04 -0.05 -25.33 16 9 N -0.62 -22.76 3.33 -811.79 -2.70 -25.46 16 10 C 0.10 3.26 6.69 86.86 0.58 3.85 16 11 C -0.10 -4.40 5.97 32.08 0.19 -4.21 16 12 C 0.04 1.86 2.79 -10.27 -0.03 1.83 16 13 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 14 C -0.53 -28.99 8.47 25.60 0.22 -28.78 16 15 H 0.05 2.68 7.53 -2.91 -0.02 2.66 16 16 C 0.02 1.14 5.36 84.66 0.45 1.60 16 17 N -0.91 -50.27 12.52 21.45 0.27 -50.00 16 18 Si 0.95 42.74 29.54 68.60 2.03 44.76 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 C 0.12 5.32 6.44 86.73 0.56 5.88 16 23 H 0.24 1.93 7.80 -4.42 -0.03 1.90 16 24 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 25 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 29 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 30 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.11 2.02 7.85 -2.39 -0.02 2.01 16 32 H 0.10 2.42 7.48 -2.39 -0.02 2.40 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.05 2.05 8.04 -2.39 -0.02 2.03 16 35 H 0.07 3.05 7.80 -2.39 -0.02 3.03 16 36 H 0.26 13.78 8.31 -92.70 -0.77 13.01 16 37 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.92 7.63 -2.39 -0.02 1.90 16 Total: -1.00 -65.74 323.04 5.66 -60.08 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.01 Total: 8.97 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 5.11 Total: -13.01 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -2.43 Total: -75.46 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.05 Total: -25.33 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -65.74 5.66 -60.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701190308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.559 kcal (2) G-P(sol) polarization free energy of solvation -65.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds