Wall clock time and date at job start Mon Mar 30 2020 04:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47519 * 20.43644 * 3 2 1 5 5 H 1.08997 * 109.52259 * 55.08278 * 4 3 2 6 6 C 1.53070 * 109.62317 * 175.10635 * 4 3 2 7 7 C 1.53039 * 109.65812 * 181.16862 * 6 4 3 8 8 C 1.53191 * 109.31416 * 298.69913 * 7 6 4 9 9 N 1.46928 * 108.77343 * 54.63452 * 8 7 6 10 10 C 1.34783 * 120.62874 * 126.37163 * 9 8 7 11 11 O 1.21274 * 119.99655 * 180.02562 * 10 9 8 12 12 C 1.50698 * 119.99922 * 0.02562 * 10 9 8 13 13 C 1.52999 * 109.47009 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47500 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99447 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00503 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99596 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00214 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47397 * 59.99803 * 18 16 14 20 20 H 1.48506 * 109.47166 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46895 * 299.99552 * 18 16 14 22 22 C 1.46919 * 118.73982 * 306.39079 * 9 8 7 23 23 H 4.44650 * 5.63458 * 179.97438 * 4 1 2 24 24 H 1.09004 * 109.46997 * 260.43354 * 3 2 1 25 25 H 1.09000 * 109.47202 * 140.43891 * 3 2 1 26 26 H 1.09007 * 109.35101 * 61.14616 * 6 4 3 27 27 H 1.09000 * 109.44413 * 301.25160 * 6 4 3 28 28 H 1.09002 * 109.49876 * 178.74890 * 7 6 4 29 29 H 1.09005 * 109.52615 * 58.67140 * 7 6 4 30 30 H 1.08998 * 109.58966 * 294.84519 * 8 7 6 31 31 H 1.08999 * 109.58758 * 174.41876 * 8 7 6 32 32 H 1.09001 * 109.47385 * 300.00399 * 12 10 9 33 33 H 1.08997 * 109.47457 * 60.00250 * 12 10 9 34 34 H 1.09001 * 109.46917 * 300.00128 * 13 12 10 35 35 H 1.08997 * 109.47262 * 59.99573 * 13 12 10 36 36 H 0.97003 * 119.99721 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.58751 * 173.39743 * 22 9 8 38 38 H 1.08996 * 109.58750 * 293.67928 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1566 -1.3508 -0.5037 5 1 2.7238 -1.5623 -1.4814 6 6 4.6823 -1.3125 -0.6209 7 6 5.1917 -2.6542 -1.1523 8 6 4.8102 -3.7660 -0.1699 9 7 3.3594 -3.7186 0.0577 10 6 2.6000 -4.8177 -0.1210 11 8 1.4035 -4.7655 0.0697 12 6 3.2378 -6.1113 -0.5578 13 6 2.1626 -7.1923 -0.6858 14 6 2.8003 -8.4862 -1.1220 15 1 3.8660 -8.5326 -1.2914 16 6 2.0235 -9.6105 -1.3047 17 7 0.7258 -9.5536 -1.0988 18 14 2.8142 -11.2144 -1.8447 19 1 3.8210 -11.6339 -0.8369 20 1 1.7706 -12.2635 -1.9690 21 1 3.4794 -11.0206 -3.1581 22 6 2.7522 -2.4503 0.4834 23 1 -1.0499 -0.0005 0.0000 24 1 3.0092 0.1716 1.0134 25 1 3.0089 0.7931 -0.6545 26 1 5.1154 -1.1229 0.3613 27 1 4.9738 -0.5164 -1.3060 28 1 6.2761 -2.6166 -1.2558 29 1 4.7404 -2.8564 -2.1237 30 1 5.3333 -3.6148 0.7743 31 1 5.0827 -4.7342 -0.5900 32 1 3.7255 -5.9686 -1.5221 33 1 3.9772 -6.4196 0.1812 34 1 1.6745 -7.3351 0.2783 35 1 1.4233 -6.8838 -1.4250 36 1 0.1793 -10.3448 -1.2270 37 1 1.6668 -2.5503 0.4945 38 1 3.1055 -2.1930 1.4819 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843669642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:53 Heat of formation + Delta-G solvation = -30.098757 kcal Electronic energy + Delta-G solvation = -17948.701666 eV Core-core repulsion = 15176.686477 eV Total energy + Delta-G solvation = -2772.015189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.24137 -38.85583 -35.88498 -35.58133 -33.63131 -32.97475 -32.05038 -28.64910 -27.46666 -26.11865 -23.57450 -23.36889 -21.27770 -19.82460 -18.97025 -18.75722 -17.67040 -16.94108 -16.63120 -16.43626 -15.79115 -15.44753 -15.03785 -14.76078 -14.43740 -14.23301 -14.05537 -13.84772 -13.66568 -13.23304 -13.18987 -12.77860 -12.50404 -12.24187 -11.96586 -11.92238 -11.81891 -11.51964 -11.45785 -11.33286 -11.06261 -10.99582 -10.63622 -10.56853 -9.59798 -8.18267 -6.33209 1.41874 1.47019 1.54734 1.66235 1.85501 1.90389 2.08119 2.43430 3.14476 3.46113 3.71648 3.85579 3.87904 4.07919 4.14305 4.32853 4.40084 4.45426 4.49756 4.60722 4.68136 4.80321 4.85673 4.87420 4.96005 5.02015 5.13091 5.19469 5.22382 5.30808 5.46564 5.50352 5.59478 5.65577 5.83363 6.15952 6.41781 6.71079 6.84809 7.25738 7.37384 8.94510 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.032345 B = 0.004516 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.467603 B = 6198.277983 C = 6884.513753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.209 4.209 3 C -0.001 4.001 4 C -0.090 4.090 5 H 0.052 0.948 6 C -0.107 4.107 7 C -0.132 4.132 8 C 0.095 3.905 9 N -0.613 5.613 10 C 0.505 3.495 11 O -0.595 6.595 12 C -0.113 4.113 13 C 0.043 3.957 14 C -0.544 4.544 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.939 5.939 18 Si 0.977 3.023 19 H -0.261 1.261 20 H -0.288 1.288 21 H -0.261 1.261 22 C 0.111 3.889 23 H 0.230 0.770 24 H 0.109 0.891 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.104 0.896 34 H -0.020 1.020 35 H -0.022 1.022 36 H 0.263 0.737 37 H 0.050 0.950 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.256 20.186 1.535 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.209 4.209 3 C -0.038 4.038 4 C -0.109 4.109 5 H 0.071 0.929 6 C -0.144 4.144 7 C -0.170 4.170 8 C -0.027 4.027 9 N -0.346 5.346 10 C 0.296 3.704 11 O -0.476 6.476 12 C -0.153 4.153 13 C 0.005 3.995 14 C -0.582 4.582 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.800 3.200 19 H -0.185 1.185 20 H -0.214 1.214 21 H -0.186 1.186 22 C -0.011 4.011 23 H 0.247 0.753 24 H 0.127 0.873 25 H 0.132 0.868 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.126 0.874 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.122 0.878 34 H -0.002 1.002 35 H -0.003 1.003 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.507 20.120 1.637 23.747 hybrid contribution -1.026 -1.049 -0.212 1.482 sum 11.481 19.071 1.425 22.306 Atomic orbital electron populations 1.25641 0.97239 1.00666 1.01281 1.23902 0.95950 1.00616 1.00443 1.18909 0.83095 0.97339 1.04452 1.21447 0.98280 0.93118 0.98073 0.92936 1.21586 0.91638 0.97733 1.03441 1.21937 1.02946 0.94187 0.97951 1.22132 0.77836 1.01562 1.01132 1.48295 1.09521 1.09240 1.67562 1.21476 0.86544 0.86618 0.75789 1.90631 1.17832 1.85770 1.53354 1.21619 0.99909 0.90658 1.03108 1.18687 0.93269 0.92984 0.94512 1.21672 0.95145 0.95263 1.46081 0.90416 1.26176 0.95234 1.03717 0.95340 1.70191 1.06647 1.30814 1.50267 0.85335 0.77928 0.77307 0.79434 1.18514 1.21356 1.18582 1.21687 0.98118 0.82945 0.98345 0.75289 0.87330 0.86750 0.89395 0.89191 0.87372 0.92905 0.89003 0.89090 0.88028 0.87810 1.00196 1.00345 0.92853 0.93167 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -5.59 19.25 74.32 1.43 -4.16 16 2 C -0.21 -4.91 12.42 31.12 0.39 -4.53 16 3 C 0.00 -0.02 5.20 28.79 0.15 0.13 16 4 C -0.09 -1.74 2.32 -10.71 -0.02 -1.77 16 5 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 6 C -0.11 -1.29 5.17 30.63 0.16 -1.13 16 7 C -0.13 -1.91 6.08 30.67 0.19 -1.72 16 8 C 0.09 1.87 6.34 86.36 0.55 2.42 16 9 N -0.61 -18.55 2.97 -818.92 -2.44 -20.98 16 10 C 0.51 21.41 7.70 87.66 0.67 22.08 16 11 O -0.60 -31.81 15.39 -3.01 -0.05 -31.85 16 12 C -0.11 -4.81 3.99 29.85 0.12 -4.69 16 13 C 0.04 2.50 4.26 29.85 0.13 2.63 16 14 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 15 H 0.08 4.06 7.74 -2.91 -0.02 4.04 16 16 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 17 N -0.94 -60.82 13.29 21.45 0.28 -60.53 16 18 Si 0.98 44.69 29.54 68.60 2.03 46.72 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 22 C 0.11 3.01 5.42 86.36 0.47 3.48 16 23 H 0.23 4.28 7.80 -4.42 -0.03 4.25 16 24 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.84 5.93 -2.39 -0.01 1.82 16 32 H 0.10 3.81 7.69 -2.39 -0.02 3.79 16 33 H 0.10 3.85 7.94 -2.39 -0.02 3.83 16 34 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 35 H -0.02 -1.44 8.10 -2.39 -0.02 -1.46 16 36 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 37 H 0.05 1.79 6.44 -2.39 -0.02 1.77 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -82.21 316.57 5.76 -76.45 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.01 Total: 8.78 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 4.92 Total: -18.57 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -2.15 Total: -81.52 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.05 Total: -31.85 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -82.21 5.76 -76.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843669642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.347 kcal (2) G-P(sol) polarization free energy of solvation -82.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds