Wall clock time and date at job start Mon Mar 30 2020 04:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47098 * 206.45863 * 3 2 1 5 5 C 1.52997 * 109.47131 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47055 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00218 * 0.02562 * 8 7 6 10 10 N 1.34784 * 120.00109 * 179.97438 * 8 7 6 11 11 C 1.47069 * 136.05284 * 359.63697 * 10 8 7 12 12 C 1.53758 * 87.88391 * 152.95561 * 11 10 8 13 13 C 1.50709 * 114.26562 * 139.78735 * 12 11 10 14 14 H 1.07996 * 120.00245 * 266.47753 * 13 12 11 15 15 C 1.37875 * 119.99790 * 86.47657 * 13 12 11 16 16 N 1.31522 * 120.00005 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00056 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46954 * 89.99997 * 17 15 13 19 19 H 1.48497 * 109.47138 * 209.99919 * 17 15 13 20 20 H 1.48494 * 109.46859 * 330.00163 * 17 15 13 21 21 C 1.47059 * 136.05949 * 179.97438 * 10 8 7 22 22 H 4.44650 * 5.63233 * 180.02562 * 4 1 2 23 23 H 1.09000 * 109.47524 * 86.45315 * 3 2 1 24 24 H 1.09001 * 109.46952 * 326.45591 * 3 2 1 25 25 H 1.08996 * 109.47452 * 60.00127 * 4 3 2 26 26 H 1.09001 * 109.46997 * 299.99701 * 4 3 2 27 27 H 1.09001 * 109.47502 * 60.00153 * 5 4 3 28 28 H 1.09001 * 109.47289 * 299.99950 * 5 4 3 29 29 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 30 30 H 1.08993 * 109.46955 * 60.00011 * 6 5 4 31 31 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 32 32 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 33 33 H 1.08995 * 113.46811 * 267.68445 * 11 10 8 34 34 H 1.09000 * 113.46782 * 38.13190 * 11 10 8 35 35 H 1.08994 * 114.40031 * 272.67293 * 12 11 10 36 36 H 0.96999 * 119.99914 * 179.97438 * 16 15 13 37 37 H 1.09000 * 113.46879 * 321.87522 * 21 10 8 38 38 H 1.09010 * 113.46500 * 92.25198 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.2923 0.6427 5 6 4.6854 1.2932 0.6421 6 6 5.1948 2.5852 1.2843 7 6 6.7248 2.5865 1.2831 8 6 7.2265 3.8592 1.9150 9 8 6.4381 4.6839 2.3263 10 7 8.5516 4.0807 2.0241 11 6 9.7794 3.3533 1.6691 12 6 10.4856 4.7145 1.5575 13 6 11.8861 4.7332 2.1141 14 1 12.0570 5.0382 3.1359 15 6 12.9490 4.3610 1.3187 16 7 12.7407 3.9892 0.0745 17 14 14.6847 4.3835 2.0087 18 1 14.9947 3.0625 2.6121 19 1 15.6485 4.6665 0.9151 20 1 14.7907 5.4393 3.0476 21 6 9.4056 5.1533 2.5558 22 1 -1.0502 -0.0005 0.0000 23 1 3.0094 -0.0628 -1.0257 24 1 3.0097 -0.8557 0.5679 25 1 2.7921 1.3556 1.6684 26 1 2.7917 2.1486 0.0748 27 1 5.0484 1.2302 -0.3837 28 1 5.0495 0.4369 1.2097 29 1 4.8308 3.4414 0.7163 30 1 4.8318 2.6487 2.3100 31 1 7.0893 1.7303 1.8508 32 1 7.0874 2.5231 0.2571 33 1 10.1635 2.7300 2.4766 34 1 9.7093 2.8200 0.7211 35 1 10.4053 5.1844 0.5774 36 1 13.4886 3.7277 -0.4852 37 1 9.0171 6.1533 2.3632 38 1 9.6903 5.0053 3.5977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855474103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:51 Heat of formation + Delta-G solvation = 5.897245 kcal Electronic energy + Delta-G solvation = -16965.405077 eV Core-core repulsion = 14194.950791 eV Total energy + Delta-G solvation = -2770.454285 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.11002 -38.94910 -37.30395 -34.79828 -34.63391 -32.27895 -30.88820 -28.36008 -26.80385 -26.57783 -23.84661 -22.10110 -21.72530 -19.65093 -18.88563 -18.72109 -17.74104 -17.10268 -16.65887 -16.46776 -16.18584 -15.48564 -15.09854 -14.57560 -14.46356 -14.18538 -13.91245 -13.35068 -13.25118 -13.05062 -12.96239 -12.78046 -12.56535 -12.37342 -12.17323 -12.09527 -11.94237 -11.43524 -11.38595 -11.06052 -11.03893 -10.95830 -10.68463 -10.49269 -9.54235 -8.15966 -6.26933 1.48118 1.50519 1.59710 1.66953 1.88640 1.93254 2.06950 2.47326 3.14244 3.47462 3.62311 3.97701 4.01640 4.17272 4.27133 4.29364 4.41891 4.51302 4.57048 4.63269 4.70220 4.73188 4.83937 4.85641 4.90920 4.98040 5.02058 5.07968 5.10732 5.24345 5.27752 5.43016 5.51032 5.60458 5.82307 6.24250 6.72744 6.81516 6.95770 7.19853 7.43095 8.93989 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.048565 B = 0.003045 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.406178 B = 9193.972483 C = 9606.845261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.217 4.217 3 C -0.014 4.014 4 C -0.110 4.110 5 C -0.111 4.111 6 C -0.097 4.097 7 C -0.125 4.125 8 C 0.521 3.479 9 O -0.602 6.602 10 N -0.648 5.648 11 C 0.115 3.885 12 C 0.022 3.978 13 C -0.528 4.528 14 H 0.065 0.935 15 C 0.021 3.979 16 N -0.918 5.918 17 Si 0.959 3.041 18 H -0.272 1.272 19 H -0.287 1.287 20 H -0.268 1.268 21 C 0.101 3.899 22 H 0.241 0.759 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.038 0.962 36 H 0.265 0.735 37 H 0.051 0.949 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.472 -9.707 -0.345 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.217 4.217 3 C -0.051 4.051 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.135 4.135 7 C -0.164 4.164 8 C 0.314 3.686 9 O -0.485 6.485 10 N -0.382 5.382 11 C -0.008 4.008 12 C 0.002 3.998 13 C -0.566 4.566 14 H 0.083 0.917 15 C -0.179 4.179 16 N -0.556 5.556 17 Si 0.784 3.216 18 H -0.197 1.197 19 H -0.213 1.213 20 H -0.193 1.193 21 C -0.022 4.022 22 H 0.257 0.743 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.011 -9.386 -0.318 17.707 hybrid contribution 0.758 0.330 0.207 0.852 sum -14.253 -9.057 -0.110 16.887 Atomic orbital electron populations 1.25708 0.97036 1.00313 1.00729 1.23875 0.95809 1.01066 1.00919 1.18859 0.83787 0.99254 1.03183 1.21469 0.95529 0.96852 1.00915 1.21559 0.94478 0.96784 1.01986 1.21281 0.92169 0.98725 1.01362 1.21649 0.97927 0.93988 1.02846 1.21183 0.79532 0.89338 0.78558 1.90607 1.55187 1.49565 1.53162 1.50118 1.04168 1.24345 1.59538 1.23382 0.79586 0.98386 0.99406 1.20273 0.92363 0.92733 0.94407 1.21207 0.91239 1.45624 0.98563 0.91658 1.25761 1.02979 0.94292 0.94907 1.70055 1.32888 1.44973 1.07683 0.85542 0.79309 0.78755 0.77968 1.19742 1.21294 1.19279 1.23212 0.88593 0.90947 0.99420 0.74288 0.88444 0.88287 0.92205 0.92415 0.90414 0.90086 0.92918 0.92558 0.87182 0.87830 0.89967 0.91661 0.94359 0.92615 0.93000 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.66 19.25 74.32 1.43 -2.23 16 2 C -0.22 -4.05 13.34 31.13 0.42 -3.64 16 3 C -0.01 -0.21 5.70 28.79 0.16 -0.05 16 4 C -0.11 -1.85 5.17 30.59 0.16 -1.69 16 5 C -0.11 -1.84 5.21 30.60 0.16 -1.68 16 6 C -0.10 -2.34 4.50 30.60 0.14 -2.20 16 7 C -0.12 -3.34 5.53 29.85 0.16 -3.18 16 8 C 0.52 19.88 8.08 87.65 0.71 20.59 16 9 O -0.60 -27.01 16.76 -3.03 -0.05 -27.06 16 10 N -0.65 -26.04 3.69 -857.83 -3.16 -29.20 16 11 C 0.11 4.66 8.00 83.27 0.67 5.32 16 12 C 0.02 1.01 3.79 -11.12 -0.04 0.97 16 13 C -0.53 -26.62 8.83 25.60 0.23 -26.39 16 14 H 0.07 3.19 7.81 -2.91 -0.02 3.17 16 15 C 0.02 1.07 5.46 84.65 0.46 1.53 16 16 N -0.92 -49.61 13.26 21.45 0.28 -49.32 16 17 Si 0.96 40.37 29.54 68.60 2.03 42.40 16 18 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 19 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 21 C 0.10 4.26 8.17 83.17 0.68 4.94 16 22 H 0.24 2.20 7.80 -4.41 -0.03 2.17 16 23 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 30 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 31 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 33 H 0.08 3.20 8.10 -2.39 -0.02 3.19 16 34 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.04 2.01 8.11 -2.39 -0.02 1.99 16 36 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 37 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.08 3.28 8.10 -2.38 -0.02 3.26 16 Total: -1.00 -62.47 331.46 5.43 -57.04 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.00 Total: 13.85 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 5.33 Total: -7.70 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.88 Total: -78.53 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.05 Total: -27.06 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -62.47 5.43 -57.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855474103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.939 kcal (2) G-P(sol) polarization free energy of solvation -62.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds