Wall clock time and date at job start Mon Mar 30 2020 03:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99925 * 2 1 4 4 H 1.48494 * 109.46912 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47015 * 299.99774 * 3 2 1 6 6 H 1.48503 * 109.46741 * 59.99719 * 3 2 1 7 7 C 1.37872 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.53502 * 114.20905 * 180.02562 * 9 7 2 11 11 N 1.47066 * 88.04593 * 220.37336 * 10 9 7 12 12 C 1.34783 * 136.05235 * 207.05730 * 11 10 9 13 13 O 1.21279 * 120.00206 * 354.88101 * 12 11 10 14 14 C 1.50697 * 119.99881 * 174.88572 * 12 11 10 15 15 C 1.52999 * 112.84675 * 292.76337 * 14 12 11 16 16 C 1.52997 * 117.50400 * 2.27990 * 15 14 12 17 17 C 1.52998 * 117.50066 * 293.61735 * 15 14 12 18 18 C 1.53780 * 113.61612 * 161.56261 * 14 12 11 19 19 C 1.53953 * 87.01971 * 220.04699 * 18 14 12 20 20 C 1.53777 * 87.11394 * 25.36473 * 19 18 14 21 21 C 1.47065 * 87.88649 * 27.08811 * 11 10 9 22 22 H 0.97005 * 120.00339 * 0.02562 * 1 2 3 23 23 H 1.09005 * 113.41018 * 313.19637 * 9 7 2 24 24 H 1.08999 * 113.46657 * 105.56375 * 10 9 7 25 25 H 1.09005 * 113.46418 * 335.17977 * 10 9 7 26 26 H 1.09005 * 115.54836 * 147.95190 * 15 14 12 27 27 H 1.09004 * 117.49672 * 0.02562 * 16 15 14 28 28 H 1.09003 * 117.50132 * 145.01724 * 16 15 14 29 29 H 1.08993 * 117.50352 * 214.98449 * 17 15 14 30 30 H 1.08998 * 117.49642 * 359.97438 * 17 15 14 31 31 H 1.08999 * 113.61425 * 334.56890 * 18 14 12 32 32 H 1.08999 * 113.61120 * 105.47097 * 18 14 12 33 33 H 1.08995 * 113.53721 * 270.81103 * 19 18 14 34 34 H 1.08998 * 113.73924 * 139.94825 * 19 18 14 35 35 H 1.08995 * 113.61877 * 220.09072 * 20 19 18 36 36 H 1.09001 * 113.69391 * 89.19365 * 20 19 18 37 37 H 1.09001 * 113.46404 * 87.66416 * 21 11 10 38 38 H 1.09001 * 113.46559 * 218.03851 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.1488 -3.7443 0.0018 11 7 1.2119 -4.3589 -0.9508 12 6 0.8393 -5.6135 -1.2730 13 8 1.3998 -6.5618 -0.7655 14 6 -0.2737 -5.8379 -2.2638 15 6 -1.6363 -5.3791 -1.7407 16 6 -1.6790 -4.7276 -0.3570 17 6 -2.2311 -6.1415 -0.5551 18 6 -0.2888 -7.2541 -2.8630 19 6 -0.6406 -6.5941 -4.2087 20 6 0.0476 -5.3255 -3.6778 21 6 0.8612 -3.0023 -1.3975 22 1 -0.4851 0.8401 -0.0004 23 1 0.4412 -2.5317 0.7295 24 1 2.1843 -4.2528 0.9652 25 1 3.1391 -3.5657 -0.4173 26 1 -2.3274 -5.0035 -2.4953 27 1 -0.7362 -4.6255 0.1805 28 1 -2.3984 -3.9237 -0.2012 29 1 -3.3135 -6.2673 -0.5294 30 1 -1.6519 -6.9703 -0.1480 31 1 0.6863 -7.7411 -2.8572 32 1 -1.0819 -7.8877 -2.4659 33 1 -1.7122 -6.4752 -4.3682 34 1 -0.1326 -7.0415 -5.0629 35 1 -0.4741 -4.4044 -3.9374 36 1 1.1150 -5.2829 -3.8946 37 1 1.5083 -2.6254 -2.1895 38 1 -0.1978 -2.8804 -1.6248 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912396824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:28 Heat of formation + Delta-G solvation = 44.007008 kcal Electronic energy + Delta-G solvation = -18992.813276 eV Core-core repulsion = 16224.011554 eV Total energy + Delta-G solvation = -2768.801722 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.59209 -38.33455 -36.58747 -35.55726 -32.67642 -29.41359 -26.62956 -25.59159 -24.92861 -24.66142 -22.04880 -21.94731 -20.71037 -18.95660 -17.66088 -16.69895 -16.33429 -15.88644 -15.35712 -14.81652 -14.60841 -14.23176 -13.47536 -13.01794 -12.75512 -12.43989 -12.39378 -12.00885 -11.75903 -11.50715 -11.29417 -11.15620 -11.06550 -10.91077 -10.78790 -10.53896 -10.42941 -10.32410 -9.94219 -9.69577 -9.45998 -9.17729 -8.81474 -8.56515 -7.79888 -6.18391 -4.23434 3.19583 3.22218 3.31388 3.34860 3.62085 3.94539 4.33142 4.58081 4.77204 4.82429 4.95343 5.10154 5.17953 5.25026 5.30961 5.43939 5.68605 5.79253 5.88514 5.89603 6.00762 6.07370 6.10943 6.18416 6.21460 6.28230 6.34224 6.39333 6.45299 6.50277 6.54894 6.61817 6.75091 6.87488 7.55990 7.79523 8.19265 8.57331 8.80303 8.83244 9.43253 10.91164 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.030983 B = 0.006170 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.501280 B = 4536.798476 C = 4637.884818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.069 3.931 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.096 3.904 11 N -0.638 5.638 12 C 0.548 3.452 13 O -0.568 6.568 14 C -0.067 4.067 15 C -0.126 4.126 16 C -0.171 4.171 17 C -0.180 4.180 18 C -0.110 4.110 19 C -0.139 4.139 20 C -0.121 4.121 21 C 0.103 3.897 22 H 0.263 0.737 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.043 -8.205 -6.123 11.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.017 3.983 10 C -0.026 4.026 11 N -0.370 5.370 12 C 0.338 3.662 13 O -0.448 6.448 14 C -0.069 4.069 15 C -0.145 4.145 16 C -0.208 4.208 17 C -0.217 4.217 18 C -0.148 4.148 19 C -0.176 4.176 20 C -0.159 4.159 21 C -0.020 4.020 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.968 -8.789 -5.912 11.311 hybrid contribution 0.412 1.025 -0.111 1.110 sum -3.557 -7.763 -6.023 10.450 Atomic orbital electron populations 1.69959 1.05998 1.26924 1.49221 1.25007 0.94855 0.99300 0.94277 0.86512 0.80234 0.83450 0.77694 1.19602 1.20923 1.20891 1.20949 0.93025 0.89617 1.51875 0.91893 1.20360 0.94610 0.91017 0.92346 1.23362 0.94578 0.93328 0.91339 1.50016 1.42171 1.04959 1.39878 1.19819 0.83673 0.81118 0.81608 1.90613 1.57566 1.41103 1.55518 1.21502 0.92800 0.98622 0.94024 1.21784 0.95410 1.05302 0.91983 1.23266 1.04064 0.95219 0.98229 1.22961 1.00170 0.96254 1.02348 1.22850 1.02498 0.94492 0.94948 1.22843 1.00691 0.96964 0.97126 1.22902 1.01213 0.98352 0.93397 1.23579 0.99938 0.76745 1.01732 0.92752 0.91385 0.92704 0.91119 0.87235 0.87545 0.88363 0.88960 0.88953 0.89508 0.91013 0.90040 0.91413 0.90531 0.89981 0.91233 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.64 13.26 55.43 0.74 -22.91 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 19.93 29.54 -169.99 -5.02 14.90 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.03 8.82 -34.44 -0.30 -13.34 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.04 0.83 3.79 -91.20 -0.35 0.48 16 10 C 0.10 2.02 8.18 -8.50 -0.07 1.95 16 11 N -0.64 -12.93 2.43 -185.02 -0.45 -13.38 16 12 C 0.55 10.89 5.59 -10.98 -0.06 10.83 16 13 O -0.57 -12.97 16.97 5.56 0.09 -12.88 16 14 C -0.07 -1.05 0.81 -154.85 -0.13 -1.18 16 15 C -0.13 -1.87 5.13 -90.62 -0.47 -2.33 16 16 C -0.17 -2.82 8.42 -26.70 -0.22 -3.04 16 17 C -0.18 -2.56 9.92 -26.70 -0.26 -2.83 16 18 C -0.11 -1.53 6.85 -25.83 -0.18 -1.71 16 19 C -0.14 -1.60 7.82 -25.83 -0.20 -1.81 16 20 C -0.12 -1.68 6.98 -25.92 -0.18 -1.86 16 21 C 0.10 2.13 7.23 -8.45 -0.06 2.07 16 22 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 23 H 0.07 1.71 8.11 -51.93 -0.42 1.29 16 24 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 26 H 0.11 1.44 8.10 -51.93 -0.42 1.02 16 27 H 0.11 2.07 5.72 -51.93 -0.30 1.77 16 28 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.09 1.31 7.75 -51.93 -0.40 0.90 16 32 H 0.07 0.93 7.91 -51.93 -0.41 0.52 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 37 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 38 H 0.06 1.31 7.28 -51.93 -0.38 0.93 16 LS Contribution 310.75 15.07 4.68 4.68 Total: -1.00 -27.83 310.75 -8.63 -36.46 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.09 Total: 4.18 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -2.58 Total: -11.07 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.28 Total: -36.29 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.83 -8.63 -36.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912396824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.472 kcal (2) G-P(sol) polarization free energy of solvation -27.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds