Wall clock time and date at job start Mon Mar 30 2020 03:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99925 * 2 1 4 4 H 1.48494 * 109.46912 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47015 * 299.99774 * 3 2 1 6 6 H 1.48503 * 109.46741 * 59.99719 * 3 2 1 7 7 C 1.37872 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.53502 * 114.20905 * 180.02562 * 9 7 2 11 11 N 1.47066 * 88.04593 * 220.37336 * 10 9 7 12 12 C 1.34783 * 136.05235 * 207.05730 * 11 10 9 13 13 O 1.21279 * 120.00206 * 354.88101 * 12 11 10 14 14 C 1.50697 * 119.99881 * 174.88572 * 12 11 10 15 15 C 1.52999 * 112.84675 * 292.76337 * 14 12 11 16 16 C 1.52997 * 117.50400 * 2.27990 * 15 14 12 17 17 C 1.52998 * 117.50066 * 293.61735 * 15 14 12 18 18 C 1.53780 * 113.61612 * 161.56261 * 14 12 11 19 19 C 1.53953 * 87.01971 * 220.04699 * 18 14 12 20 20 C 1.53777 * 87.11394 * 25.36473 * 19 18 14 21 21 C 1.47065 * 87.88649 * 27.08811 * 11 10 9 22 22 H 0.97005 * 120.00339 * 0.02562 * 1 2 3 23 23 H 1.09005 * 113.41018 * 313.19637 * 9 7 2 24 24 H 1.08999 * 113.46657 * 105.56375 * 10 9 7 25 25 H 1.09005 * 113.46418 * 335.17977 * 10 9 7 26 26 H 1.09005 * 115.54836 * 147.95190 * 15 14 12 27 27 H 1.09004 * 117.49672 * 0.02562 * 16 15 14 28 28 H 1.09003 * 117.50132 * 145.01724 * 16 15 14 29 29 H 1.08993 * 117.50352 * 214.98449 * 17 15 14 30 30 H 1.08998 * 117.49642 * 359.97438 * 17 15 14 31 31 H 1.08999 * 113.61425 * 334.56890 * 18 14 12 32 32 H 1.08999 * 113.61120 * 105.47097 * 18 14 12 33 33 H 1.08995 * 113.53721 * 270.81103 * 19 18 14 34 34 H 1.08998 * 113.73924 * 139.94825 * 19 18 14 35 35 H 1.08995 * 113.61877 * 220.09072 * 20 19 18 36 36 H 1.09001 * 113.69391 * 89.19365 * 20 19 18 37 37 H 1.09001 * 113.46404 * 87.66416 * 21 11 10 38 38 H 1.09001 * 113.46559 * 218.03851 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.1488 -3.7443 0.0018 11 7 1.2119 -4.3589 -0.9508 12 6 0.8393 -5.6135 -1.2730 13 8 1.3998 -6.5618 -0.7655 14 6 -0.2737 -5.8379 -2.2638 15 6 -1.6363 -5.3791 -1.7407 16 6 -1.6790 -4.7276 -0.3570 17 6 -2.2311 -6.1415 -0.5551 18 6 -0.2888 -7.2541 -2.8630 19 6 -0.6406 -6.5941 -4.2087 20 6 0.0476 -5.3255 -3.6778 21 6 0.8612 -3.0023 -1.3975 22 1 -0.4851 0.8401 -0.0004 23 1 0.4412 -2.5317 0.7295 24 1 2.1843 -4.2528 0.9652 25 1 3.1391 -3.5657 -0.4173 26 1 -2.3274 -5.0035 -2.4953 27 1 -0.7362 -4.6255 0.1805 28 1 -2.3984 -3.9237 -0.2012 29 1 -3.3135 -6.2673 -0.5294 30 1 -1.6519 -6.9703 -0.1480 31 1 0.6863 -7.7411 -2.8572 32 1 -1.0819 -7.8877 -2.4659 33 1 -1.7122 -6.4752 -4.3682 34 1 -0.1326 -7.0415 -5.0629 35 1 -0.4741 -4.4044 -3.9374 36 1 1.1150 -5.2829 -3.8946 37 1 1.5083 -2.6254 -2.1895 38 1 -0.1978 -2.8804 -1.6248 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912396824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:28 Heat of formation + Delta-G solvation = 30.402139 kcal Electronic energy + Delta-G solvation = -18993.403227 eV Core-core repulsion = 16224.011554 eV Total energy + Delta-G solvation = -2769.391673 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.99691 -39.87411 -38.22198 -36.72599 -34.62766 -31.13919 -28.10832 -26.80873 -26.63918 -26.23322 -23.39802 -23.12449 -22.21650 -20.44905 -19.22072 -18.50530 -17.82556 -17.17023 -16.92076 -16.49594 -15.94065 -15.85104 -14.78407 -14.58817 -14.33188 -14.10643 -13.61175 -13.28151 -13.26268 -13.09948 -13.02557 -12.76970 -12.55273 -12.41643 -12.20253 -12.16628 -11.62901 -11.49436 -11.31006 -11.11757 -11.03681 -10.87410 -10.58487 -10.33636 -9.51510 -8.15260 -6.26018 1.45701 1.49534 1.59396 1.62852 2.03288 2.46789 2.74246 3.14631 3.36497 3.64208 3.69043 3.75987 3.89150 4.08517 4.14592 4.26781 4.29141 4.42208 4.51112 4.63385 4.68214 4.76097 4.76899 4.81822 4.86731 4.98651 5.02257 5.05748 5.08765 5.09743 5.20884 5.22744 5.26879 5.49235 5.60647 5.82949 6.25389 6.81726 6.93937 7.19307 7.43663 8.94443 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.030983 B = 0.006170 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.501280 B = 4536.798476 C = 4637.884818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.025 3.975 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.062 0.938 9 C 0.029 3.971 10 C 0.098 3.902 11 N -0.636 5.636 12 C 0.543 3.457 13 O -0.603 6.603 14 C -0.076 4.076 15 C -0.116 4.116 16 C -0.195 4.195 17 C -0.162 4.162 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.123 4.123 21 C 0.123 3.877 22 H 0.264 0.736 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.078 0.922 26 H 0.137 0.863 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 -8.374 -7.923 12.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.081 0.919 9 C 0.010 3.990 10 C -0.025 4.025 11 N -0.368 5.368 12 C 0.335 3.665 13 O -0.486 6.486 14 C -0.079 4.079 15 C -0.134 4.134 16 C -0.233 4.233 17 C -0.198 4.198 18 C -0.149 4.149 19 C -0.153 4.153 20 C -0.161 4.161 21 C 0.001 3.999 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.155 0.845 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.141 0.859 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.854 -8.962 -7.720 12.786 hybrid contribution 0.723 1.035 0.535 1.372 sum -4.131 -7.927 -7.185 11.468 Atomic orbital electron populations 1.70056 1.07215 1.27695 1.50122 1.25698 0.95577 1.02275 0.94022 0.85544 0.79160 0.79605 0.77564 1.19107 1.20450 1.20940 1.21217 0.93193 0.90642 1.51755 0.91934 1.20198 0.94278 0.91273 0.93237 1.23258 0.94827 0.92649 0.91750 1.49997 1.41900 1.05264 1.39606 1.20690 0.84119 0.80083 0.81615 1.90585 1.59005 1.41909 1.57060 1.21742 0.91690 1.00783 0.93698 1.21916 0.95168 1.04441 0.91857 1.23111 1.02934 0.97129 1.00085 1.23004 1.01663 0.94033 1.01137 1.22866 1.02136 0.93404 0.96491 1.22799 1.01967 0.94378 0.96161 1.22952 1.01136 1.00054 0.91921 1.23252 0.99883 0.76657 1.00158 0.92658 0.94135 0.93100 0.90378 0.84507 0.91123 0.88250 0.85885 0.90325 0.91194 0.89948 0.87731 0.89599 0.89739 0.91019 0.90940 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.20 13.26 21.45 0.28 -48.92 16 2 C 0.02 1.28 5.46 84.65 0.46 1.75 16 3 Si 0.96 40.70 29.54 68.60 2.03 42.73 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 6 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.53 -27.00 8.82 25.60 0.23 -26.77 16 8 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 9 C 0.03 1.39 3.79 -11.17 -0.04 1.35 16 10 C 0.10 4.23 8.18 83.18 0.68 4.91 16 11 N -0.64 -26.19 2.43 -857.67 -2.09 -28.28 16 12 C 0.54 21.71 5.59 87.66 0.49 22.20 16 13 O -0.60 -28.08 16.97 -3.03 -0.05 -28.13 16 14 C -0.08 -2.30 0.81 -52.40 -0.04 -2.34 16 15 C -0.12 -3.17 5.13 -10.80 -0.06 -3.22 16 16 C -0.20 -6.41 8.42 30.62 0.26 -6.15 16 17 C -0.16 -4.29 9.92 30.62 0.30 -3.99 16 18 C -0.11 -2.85 6.85 31.18 0.21 -2.64 16 19 C -0.12 -2.24 7.82 31.18 0.24 -2.00 16 20 C -0.12 -3.11 6.98 31.12 0.22 -2.90 16 21 C 0.12 5.15 7.23 83.22 0.60 5.75 16 22 H 0.26 13.53 8.31 -92.70 -0.77 12.76 16 23 H 0.04 2.14 8.11 -2.38 -0.02 2.12 16 24 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.08 3.24 8.10 -2.38 -0.02 3.22 16 26 H 0.14 3.05 8.10 -2.38 -0.02 3.03 16 27 H 0.07 2.85 5.72 -2.38 -0.01 2.84 16 28 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.07 2.04 7.75 -2.39 -0.02 2.02 16 32 H 0.08 1.92 7.91 -2.39 -0.02 1.91 16 33 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 36 H 0.07 1.96 8.09 -2.39 -0.02 1.94 16 37 H 0.07 3.00 8.10 -2.39 -0.02 2.98 16 38 H 0.06 2.66 7.28 -2.39 -0.02 2.64 16 Total: -1.00 -60.33 310.75 4.75 -55.58 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 1.03 Total: 21.07 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 3.56 Total: -14.05 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -1.80 Total: -77.20 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.05 Total: -28.13 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -60.33 4.75 -55.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912396824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.980 kcal (2) G-P(sol) polarization free energy of solvation -60.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds