Wall clock time and date at job start Mon Mar 30 2020 03:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99977 * 2 1 4 4 H 1.48497 * 109.47427 * 240.00204 * 3 2 1 5 5 H 1.48506 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46906 * 119.99866 * 3 2 1 7 7 C 1.37874 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99924 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00174 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47500 * 180.02562 * 9 7 2 11 11 N 1.40296 * 126.09372 * 89.97219 * 10 9 7 12 12 C 1.31065 * 108.26866 * 180.02562 * 11 10 9 13 13 C 1.39294 * 108.08081 * 359.97438 * 12 11 10 14 14 C 1.34319 * 126.09082 * 269.97586 * 10 9 7 15 15 C 1.50833 * 128.03326 * 359.77306 * 14 10 9 16 16 C 1.53359 * 108.37626 * 196.66546 * 15 14 10 17 17 C 1.53110 * 109.50982 * 310.04696 * 16 15 14 18 18 C 1.50839 * 127.89957 * 179.97438 * 13 12 11 19 19 H 1.09001 * 109.68105 * 76.80840 * 18 13 12 20 20 C 1.53002 * 109.68486 * 316.25155 * 18 13 12 21 21 C 1.52997 * 109.47438 * 175.48449 * 20 18 13 22 22 N 1.46898 * 109.47237 * 185.17211 * 21 20 18 23 23 H 0.97005 * 120.00015 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47246 * 59.99562 * 9 7 2 25 25 H 1.09000 * 109.46745 * 300.00122 * 9 7 2 26 26 H 1.08003 * 125.95797 * 180.02562 * 12 11 10 27 27 H 1.08998 * 109.68467 * 316.37615 * 15 14 10 28 28 H 1.09007 * 109.67818 * 76.93336 * 15 14 10 29 29 H 1.08995 * 109.45070 * 190.04638 * 16 15 14 30 30 H 1.08994 * 109.47411 * 70.06448 * 16 15 14 31 31 H 1.09004 * 109.46195 * 310.28386 * 17 16 15 32 32 H 1.08995 * 109.46586 * 190.29981 * 17 16 15 33 33 H 1.09006 * 109.46938 * 295.48575 * 20 18 13 34 34 H 1.09001 * 109.47278 * 55.48553 * 20 18 13 35 35 H 1.09001 * 109.47314 * 305.17483 * 21 20 18 36 36 H 1.09005 * 109.47202 * 65.17192 * 21 20 18 37 37 H 1.00904 * 110.99527 * 179.97438 * 22 21 20 38 38 H 1.00896 * 111.00455 * 303.95419 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 7 2.7396 -4.2410 1.1323 12 6 3.5510 -5.1890 0.7313 13 6 3.5554 -5.1937 -0.6616 14 6 2.7177 -4.2139 -1.0867 15 6 2.4466 -3.9031 -2.5376 16 6 2.9176 -5.0927 -3.3831 17 6 4.3461 -5.4711 -2.9824 18 6 4.3327 -6.1008 -1.5826 19 1 3.8559 -7.0802 -1.6215 20 6 5.7680 -6.2454 -1.0730 21 6 6.5198 -7.2532 -1.9448 22 7 7.8570 -7.4853 -1.3829 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6241 -2.5574 0.8880 26 1 4.1168 -5.8516 1.3696 27 1 1.3782 -3.7473 -2.6863 28 1 2.9931 -3.0060 -2.8291 29 1 2.8966 -4.8192 -4.4379 30 1 2.2560 -5.9425 -3.2149 31 1 4.9702 -4.5775 -2.9760 32 1 4.7462 -6.1886 -3.6988 33 1 6.2696 -5.2787 -1.1204 34 1 5.7536 -6.5971 -0.0414 35 1 5.9686 -8.1932 -1.9711 36 1 6.6142 -6.8590 -2.9567 37 1 8.3737 -8.1483 -1.9412 38 1 8.3648 -6.6186 -1.2881 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082827299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:00 Heat of formation + Delta-G solvation = 24.340142 kcal Electronic energy + Delta-G solvation = -18321.456836 eV Core-core repulsion = 15584.095046 eV Total energy + Delta-G solvation = -2737.361790 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.31877 -38.28002 -35.89337 -35.71497 -33.86803 -32.07132 -30.29732 -28.78920 -27.80894 -25.35812 -23.96667 -22.92316 -22.12056 -20.91743 -19.46870 -18.83471 -17.58090 -16.61976 -16.49003 -16.12533 -15.84241 -15.47757 -14.98728 -14.86161 -14.48462 -14.24225 -13.94365 -13.88897 -13.46655 -13.14781 -13.10438 -12.82006 -12.71171 -12.38146 -12.28620 -11.88347 -11.82932 -11.61003 -11.56743 -11.18623 -11.06424 -10.77129 -10.04976 -9.48628 -8.99108 -8.36828 -6.55204 1.18477 1.34855 1.36933 1.45992 1.92733 2.02401 2.31783 2.92727 3.65237 3.81576 3.89879 4.00265 4.11537 4.21394 4.31220 4.42621 4.55208 4.64425 4.71318 4.72565 4.84263 4.89239 4.91511 4.93204 5.05820 5.15518 5.20838 5.27906 5.37714 5.47789 5.48652 5.58618 5.65420 5.77291 6.00624 6.30300 6.34162 6.59695 6.68830 7.06919 7.16259 8.69554 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.028113 B = 0.005348 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.733431 B = 5234.472421 C = 5297.681164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.022 3.978 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.555 4.555 8 H 0.048 0.952 9 C 0.273 3.727 10 N -0.351 5.351 11 N -0.355 5.355 12 C 0.034 3.966 13 C -0.255 4.255 14 C 0.072 3.928 15 C -0.055 4.055 16 C -0.103 4.103 17 C -0.110 4.110 18 C 0.007 3.993 19 H 0.083 0.917 20 C -0.100 4.100 21 C 0.066 3.934 22 N -0.864 5.864 23 H 0.274 0.726 24 H 0.043 0.957 25 H 0.018 0.982 26 H 0.199 0.801 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.350 0.650 38 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.083 -12.721 -9.636 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.201 1.201 7 C -0.593 4.593 8 H 0.066 0.934 9 C 0.154 3.846 10 N -0.130 5.130 11 N -0.178 5.178 12 C -0.149 4.149 13 C -0.267 4.267 14 C -0.059 4.059 15 C -0.094 4.094 16 C -0.140 4.140 17 C -0.147 4.147 18 C -0.013 4.013 19 H 0.101 0.899 20 C -0.138 4.138 21 C -0.064 4.064 22 N -0.395 5.395 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.036 0.964 26 H 0.215 0.785 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.163 0.837 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.888 -12.164 -7.961 17.581 hybrid contribution 0.529 1.260 -0.861 1.615 sum 10.417 -10.904 -8.821 17.471 Atomic orbital electron populations 1.70004 1.07388 1.29006 1.49299 1.25777 0.95841 1.02791 0.93498 0.85391 0.78347 0.77600 0.79070 1.18838 1.19510 1.20076 1.21379 0.93017 0.91060 1.53806 0.93394 1.19133 0.86450 0.81506 0.97505 1.48911 1.34440 1.26396 1.03300 1.77399 1.17152 1.12690 1.10579 1.23887 0.98263 0.97189 0.95536 1.20097 1.08207 1.04835 0.93555 1.21541 0.97419 0.95257 0.91685 1.20393 1.01589 1.00517 0.86871 1.21542 0.97228 0.96057 0.99216 1.21724 0.96241 1.00816 0.95940 1.19537 0.93373 0.96196 0.92151 0.89916 1.21478 0.93950 0.98441 0.99918 1.21785 0.90027 0.98974 0.95622 1.58691 1.05325 1.17416 1.58054 0.91664 0.93869 0.96370 0.78465 0.91413 0.90778 0.88925 0.91158 0.92849 0.88781 0.93539 0.92036 0.90619 0.94324 0.83722 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.19 13.29 21.45 0.28 -52.90 16 2 C 0.02 1.23 5.46 84.65 0.46 1.69 16 3 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.55 -32.10 9.39 25.60 0.24 -31.86 16 8 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 9 C 0.27 15.10 6.04 85.63 0.52 15.62 16 10 N -0.35 -17.40 3.58 -338.40 -1.21 -18.62 16 11 N -0.36 -17.22 12.59 -57.28 -0.72 -17.94 16 12 C 0.03 1.31 11.39 85.06 0.97 2.28 16 13 C -0.26 -8.98 5.43 -20.14 -0.11 -9.09 16 14 C 0.07 2.94 6.73 41.64 0.28 3.22 16 15 C -0.05 -1.83 5.90 30.01 0.18 -1.66 16 16 C -0.10 -2.37 5.89 30.75 0.18 -2.19 16 17 C -0.11 -2.33 4.72 30.80 0.15 -2.18 16 18 C 0.01 0.18 2.55 -11.33 -0.03 0.15 16 19 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 20 C -0.10 -2.19 4.77 30.59 0.15 -2.04 16 21 C 0.07 1.09 6.45 86.30 0.56 1.65 16 22 N -0.86 -13.64 9.62 -186.72 -1.80 -15.44 16 23 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 24 H 0.04 2.38 7.57 -2.39 -0.02 2.36 16 25 H 0.02 1.09 8.14 -2.39 -0.02 1.08 16 26 H 0.20 6.04 7.76 -2.91 -0.02 6.02 16 27 H 0.07 2.34 7.76 -2.39 -0.02 2.32 16 28 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.56 8.11 -2.39 -0.02 1.54 16 31 H 0.05 1.26 8.07 -2.39 -0.02 1.24 16 32 H 0.09 1.41 7.25 -2.39 -0.02 1.39 16 33 H 0.05 1.14 8.11 -2.38 -0.02 1.12 16 34 H 0.06 1.47 7.51 -2.39 -0.02 1.45 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.04 0.55 7.10 -2.38 -0.02 0.54 16 37 H 0.35 4.07 9.08 -89.69 -0.81 3.25 16 38 H 0.34 5.07 8.99 -89.70 -0.81 4.26 16 Total: -1.00 -67.62 308.81 1.56 -66.06 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -0.56 Total: 17.45 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 3.54 Total: -24.40 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -3.45 Total: -104.90 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -67.62 1.56 -66.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082827299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.403 kcal (2) G-P(sol) polarization free energy of solvation -67.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds