Wall clock time and date at job start Mon Mar 30 2020 03:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99941 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99678 * 3 2 1 5 5 H 1.48505 * 109.47171 * 29.99618 * 3 2 1 6 6 H 1.48500 * 109.47225 * 149.99922 * 3 2 1 7 7 C 1.37870 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99755 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00169 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.47465 * 180.02562 * 9 7 2 11 11 N 1.30500 * 125.64711 * 304.97995 * 10 9 7 12 12 C 1.34133 * 109.25750 * 180.02562 * 11 10 9 13 13 C 1.34671 * 108.01641 * 359.97438 * 12 11 10 14 14 C 1.50703 * 126.59019 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.46912 * 85.02588 * 14 13 12 16 16 N 1.46901 * 109.46769 * 180.02562 * 15 14 13 17 17 C 1.48529 * 111.00334 * 52.60118 * 16 15 14 18 18 C 1.54939 * 103.22773 * 159.72019 * 17 16 15 19 19 C 1.54592 * 102.92065 * 322.58285 * 18 17 16 20 20 C 1.47907 * 110.99770 * 169.99935 * 16 15 14 21 21 N 1.35047 * 125.65035 * 125.28226 * 10 9 7 22 22 H 0.96994 * 126.39740 * 0.02562 * 21 10 9 23 23 H 0.97002 * 119.99609 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46910 * 60.00035 * 9 7 2 25 25 H 1.08999 * 109.47015 * 300.00019 * 9 7 2 26 26 H 1.07994 * 125.99195 * 179.97438 * 12 11 10 27 27 H 1.09002 * 109.47152 * 325.02360 * 14 13 12 28 28 H 1.09001 * 109.46980 * 205.02460 * 14 13 12 29 29 H 1.09001 * 109.47194 * 299.99742 * 15 14 13 30 30 H 1.08992 * 109.47399 * 59.99914 * 15 14 13 31 31 H 1.09002 * 110.66801 * 278.15661 * 17 16 15 32 32 H 1.09002 * 110.66763 * 41.28631 * 17 16 15 33 33 H 1.09000 * 110.72440 * 204.22727 * 18 17 16 34 34 H 1.08998 * 110.72717 * 80.94852 * 18 17 16 35 35 H 1.08991 * 110.31401 * 263.03999 * 19 18 17 36 36 H 1.09008 * 110.30894 * 140.87320 * 19 18 17 37 37 H 1.09001 * 109.91438 * 333.50218 * 20 16 15 38 38 H 1.09000 * 109.91768 * 94.60586 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0010 11 7 3.6940 -3.5347 0.8696 12 6 4.3281 -4.6754 0.5598 13 6 5.0687 -4.4540 -0.5430 14 6 5.9482 -5.4529 -1.2499 15 6 5.1049 -6.2717 -2.2293 16 7 5.9622 -7.2458 -2.9179 17 6 6.7361 -8.0565 -1.9433 18 6 7.1353 -9.3097 -2.7623 19 6 5.8857 -9.5638 -3.6363 20 6 5.1518 -8.2112 -3.6919 21 7 4.8743 -3.1454 -0.8946 22 1 5.2776 -2.6856 -1.6474 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8752 -0.6804 -0.8888 26 1 4.2572 -5.6078 1.1000 27 1 6.4032 -6.1191 -0.5169 28 1 6.7302 -4.9257 -1.7964 29 1 4.3229 -6.7989 -1.6828 30 1 4.6500 -5.6055 -2.9622 31 1 7.6223 -7.5158 -1.6109 32 1 6.1128 -8.3348 -1.0935 33 1 7.3239 -10.1572 -2.1033 34 1 8.0058 -9.1025 -3.3847 35 1 5.2501 -10.3205 -3.1767 36 1 6.1817 -9.8750 -4.6382 37 1 4.1621 -8.3071 -3.2453 38 1 5.0620 -7.8762 -4.7252 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259668473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:42 Heat of formation + Delta-G solvation = 48.821108 kcal Electronic energy + Delta-G solvation = -17537.694966 eV Core-core repulsion = 14801.394750 eV Total energy + Delta-G solvation = -2736.300216 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.43002 -39.12226 -34.27062 -33.09522 -31.80492 -31.04066 -29.55524 -28.92259 -26.13709 -23.51144 -22.60062 -21.16502 -20.94110 -20.28016 -19.41943 -16.97793 -16.64489 -16.21852 -15.92763 -14.84433 -14.46278 -14.25201 -14.02742 -13.54161 -13.32762 -12.90036 -12.85629 -12.68246 -12.17048 -11.91252 -11.77077 -11.63801 -11.51000 -11.32025 -11.05976 -10.81115 -10.69616 -10.50254 -10.05241 -9.39189 -9.30697 -9.12885 -8.61138 -8.58718 -7.51992 -6.05182 -4.04149 2.60482 3.26826 3.35686 3.36521 3.63398 3.84928 3.94068 4.40408 4.40798 4.45618 4.71027 4.98542 5.04714 5.13075 5.18995 5.25984 5.28157 5.42849 5.47857 5.52246 5.56495 5.62730 5.67250 5.72813 5.85658 5.91793 6.00199 6.05332 6.11963 6.67835 6.71160 6.83637 6.86081 7.02789 7.40673 7.59860 8.03133 8.52376 8.92875 9.05265 9.52447 11.08003 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.046186 B = 0.003727 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.095801 B = 7510.068345 C = 7653.293808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.062 3.938 10 C 0.267 3.733 11 N -0.488 5.488 12 C -0.022 4.022 13 C -0.061 4.061 14 C -0.031 4.031 15 C 0.051 3.949 16 N -0.520 5.520 17 C 0.030 3.970 18 C -0.124 4.124 19 C -0.131 4.131 20 C 0.034 3.966 21 N -0.572 5.572 22 H 0.411 0.589 23 H 0.264 0.736 24 H 0.047 0.953 25 H 0.026 0.974 26 H 0.157 0.843 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.318 -15.781 -6.875 23.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.544 4.544 8 H 0.099 0.901 9 C 0.023 3.977 10 C 0.003 3.997 11 N -0.206 5.206 12 C -0.171 4.171 13 C -0.176 4.176 14 C -0.070 4.070 15 C -0.078 4.078 16 N -0.244 5.244 17 C -0.097 4.097 18 C -0.163 4.163 19 C -0.169 4.169 20 C -0.094 4.094 21 N -0.175 5.175 22 H 0.248 0.752 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.174 0.826 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.937 -15.288 -6.501 22.340 hybrid contribution 0.389 0.528 -0.549 0.855 sum 15.326 -14.760 -7.050 22.415 Atomic orbital electron populations 1.69894 1.06179 1.26900 1.50602 1.24953 0.94802 0.98796 0.94701 0.86854 0.80476 0.83944 0.78475 1.20238 1.21028 1.18948 1.20838 0.87552 0.95141 1.50878 0.90140 1.18270 0.98266 0.83369 0.97767 1.23931 0.90576 0.98318 0.86846 1.70359 1.24059 0.99303 1.26861 1.22042 0.99787 0.98120 0.97191 1.20816 1.08511 0.86181 1.02064 1.19885 0.95684 0.94668 0.96789 1.22353 0.94396 0.94725 0.96282 1.64833 1.23541 1.13878 1.22167 1.23277 0.98386 0.93730 0.94346 1.22486 0.98124 0.97326 0.98321 1.22397 0.96992 0.96861 1.00692 1.22877 0.95602 0.91441 0.99508 1.43331 1.37985 1.10077 1.26120 0.75208 0.92557 0.93531 0.95576 0.82601 0.90160 0.90951 0.93939 0.90554 0.89869 0.93437 0.91143 0.90816 0.91551 0.91092 0.93571 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.51 -14.63 9.61 -34.44 -0.33 -14.96 16 8 H 0.08 2.62 7.98 -52.48 -0.42 2.20 16 9 C 0.06 1.50 4.67 -29.04 -0.14 1.36 16 10 C 0.27 5.95 7.37 -155.41 -1.15 4.80 16 11 N -0.49 -11.38 11.20 -10.81 -0.12 -11.50 16 12 C -0.02 -0.42 11.79 -17.81 -0.21 -0.63 16 13 C -0.06 -0.98 6.49 -81.60 -0.53 -1.51 16 14 C -0.03 -0.37 5.43 -27.88 -0.15 -0.52 16 15 C 0.05 0.60 5.01 -3.82 -0.02 0.58 16 16 N -0.52 -5.46 5.40 -230.45 -1.24 -6.71 16 17 C 0.03 0.27 5.10 -1.90 -0.01 0.26 16 18 C -0.12 -0.92 7.06 -24.87 -0.18 -1.09 16 19 C -0.13 -0.99 6.93 -25.37 -0.18 -1.17 16 20 C 0.03 0.32 6.70 -2.75 -0.02 0.30 16 21 N -0.57 -10.04 6.15 -6.54 -0.04 -10.08 16 22 H 0.41 5.87 8.96 -40.82 -0.37 5.51 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 24 H 0.05 1.13 7.20 -51.93 -0.37 0.75 16 25 H 0.03 0.57 7.57 -51.93 -0.39 0.18 16 26 H 0.16 2.48 8.06 -52.49 -0.42 2.05 16 27 H 0.08 0.85 6.79 -51.93 -0.35 0.50 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.53 7.81 -51.93 -0.41 0.13 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.08 0.69 7.66 -51.93 -0.40 0.29 16 32 H 0.05 0.43 8.00 -51.93 -0.42 0.01 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 37 H 0.05 0.45 7.57 -51.93 -0.39 0.06 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 309.48 15.07 4.66 4.66 Total: -1.00 -32.92 309.48 -9.70 -42.62 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.07 Total: 2.27 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -3.00 Total: -10.68 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.63 Total: -55.24 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.92 -9.70 -42.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259668473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.445 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds