Wall clock time and date at job start Mon Mar 30 2020 04:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30841 * 125.89496 * 2 1 4 4 N 1.40091 * 108.20151 * 180.02562 * 3 2 1 5 5 H 0.96989 * 126.03309 * 180.02562 * 4 3 2 6 6 C 1.34947 * 107.92293 * 359.75832 * 4 3 2 7 7 C 1.50699 * 126.12606 * 180.23805 * 6 4 3 8 8 C 1.35316 * 107.75010 * 0.38540 * 6 4 3 9 9 C 1.50697 * 126.04254 * 179.86975 * 8 6 4 10 10 H 1.09006 * 109.52432 * 6.16486 * 9 8 6 11 11 C 1.53123 * 109.57924 * 246.00567 * 9 8 6 12 12 C 1.53035 * 109.28168 * 182.40997 * 11 9 8 13 13 N 1.46847 * 109.52001 * 59.17587 * 12 11 9 14 14 C 1.46844 * 111.20234 * 298.25660 * 13 12 11 15 15 H 1.08996 * 109.45566 * 301.73275 * 14 13 12 16 16 C 1.50701 * 109.46056 * 181.75806 * 14 13 12 17 17 H 1.08002 * 119.99935 * 239.94703 * 16 14 13 18 18 C 1.37878 * 119.99853 * 59.95335 * 16 14 13 19 19 N 1.31508 * 119.99952 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 119.99647 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46935 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47127 * 300.00029 * 20 18 16 23 23 H 1.48505 * 109.46812 * 60.00335 * 20 18 16 24 24 C 1.53037 * 109.52073 * 61.74723 * 14 13 12 25 25 H 1.08991 * 109.47378 * 265.80233 * 1 2 3 26 26 H 1.09001 * 109.46626 * 25.79975 * 1 2 3 27 27 H 1.08995 * 109.47047 * 145.79690 * 1 2 3 28 28 H 1.08995 * 109.47347 * 270.17521 * 7 6 4 29 29 H 1.09003 * 109.47044 * 30.18303 * 7 6 4 30 30 H 1.08999 * 109.47144 * 150.17506 * 7 6 4 31 31 H 1.08998 * 109.49945 * 302.35369 * 11 9 8 32 32 H 1.08996 * 109.50009 * 62.42524 * 11 9 8 33 33 H 1.08998 * 109.46365 * 179.19515 * 12 11 9 34 34 H 1.09003 * 109.45837 * 299.16470 * 12 11 9 35 35 H 1.00901 * 110.99622 * 174.16087 * 13 12 11 36 36 H 0.97005 * 119.99615 * 180.02562 * 19 18 16 37 37 H 1.09004 * 109.50755 * 60.75859 * 24 14 13 38 38 H 1.08997 * 109.50632 * 180.84299 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 1 4.3908 1.2080 -0.0004 6 6 3.6142 -0.7153 0.0045 7 6 4.8350 -1.5988 0.0108 8 6 2.3272 -1.1330 -0.0005 9 6 1.8599 -2.5657 -0.0003 10 1 2.7176 -3.2286 0.1148 11 6 1.1489 -2.8737 -1.3210 12 6 0.6248 -4.3112 -1.2895 13 7 -0.3046 -4.4700 -0.1637 14 6 0.3677 -4.2256 1.1187 15 1 1.2051 -4.9149 1.2267 16 6 -0.6084 -4.4408 2.2464 17 1 -0.8375 -3.6316 2.9241 18 6 -1.2089 -5.6706 2.4132 19 7 -0.9302 -6.6558 1.5878 20 14 -2.4184 -5.9375 3.8116 21 1 -2.9202 -7.3346 3.7722 22 1 -1.7379 -5.6917 5.1083 23 1 -3.5592 -4.9981 3.6653 24 6 0.8841 -2.7855 1.1590 25 1 -0.3633 -0.0752 1.0248 26 1 -0.3632 0.9253 -0.4473 27 1 -0.3633 -0.8499 -0.5777 28 1 5.1338 -1.8132 -1.0152 29 1 5.6489 -1.0903 0.5277 30 1 4.6053 -2.5322 0.5249 31 1 0.3146 -2.1850 -1.4543 32 1 1.8505 -2.7596 -2.1472 33 1 0.1055 -4.5290 -2.2227 34 1 1.4611 -5.0001 -1.1700 35 1 -0.7367 -5.3818 -0.1774 36 1 -1.3530 -7.5209 1.7049 37 1 0.0456 -2.0954 1.0647 38 1 1.3962 -2.6089 2.1048 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259727177.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:16 Heat of formation + Delta-G solvation = 32.143149 kcal Electronic energy + Delta-G solvation = -18821.598771 eV Core-core repulsion = 16084.575344 eV Total energy + Delta-G solvation = -2737.023426 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.35837 -39.16627 -35.19779 -34.27232 -33.60756 -31.56884 -30.83834 -28.94445 -27.67502 -27.00208 -24.07178 -22.97545 -21.06382 -20.59635 -20.06444 -18.51577 -17.71961 -16.91725 -16.13353 -16.04531 -15.35322 -15.26100 -14.65000 -14.42306 -14.14666 -14.02152 -13.96518 -13.58054 -13.50777 -13.29022 -13.19081 -12.77338 -12.73962 -12.58026 -12.24187 -12.04809 -11.83437 -11.53932 -11.00960 -10.96368 -10.82656 -10.58972 -10.11295 -9.17820 -8.68749 -8.11565 -6.22291 0.94072 1.45323 1.47157 1.54462 1.79470 2.03994 2.46676 3.14503 3.74117 3.81339 4.02234 4.19588 4.26830 4.32925 4.39942 4.54488 4.68623 4.72513 4.77457 4.82182 4.85878 4.91880 4.99504 5.06237 5.15895 5.18032 5.22513 5.34613 5.36465 5.44906 5.54809 5.71904 5.81104 5.91689 6.28831 6.52241 6.72478 6.80770 7.08763 7.22892 7.49530 8.96482 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.029405 B = 0.006098 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.978810 B = 4590.503045 C = 4807.061407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.080 3.920 3 N -0.328 5.328 4 N -0.471 5.471 5 H 0.449 0.551 6 C 0.091 3.909 7 C -0.090 4.090 8 C -0.239 4.239 9 C 0.000 4.000 10 H 0.061 0.939 11 C -0.094 4.094 12 C 0.053 3.947 13 N -0.690 5.690 14 C 0.218 3.782 15 H -0.045 1.045 16 C -0.527 4.527 17 H 0.053 0.947 18 C 0.021 3.979 19 N -0.925 5.925 20 Si 0.958 3.042 21 H -0.283 1.283 22 H -0.274 1.274 23 H -0.272 1.272 24 C -0.087 4.087 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.002 0.998 35 H 0.346 0.654 36 H 0.264 0.736 37 H 0.063 0.937 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.598 9.988 -5.342 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 N -0.153 5.153 4 N -0.181 5.181 5 H 0.295 0.705 6 C -0.038 4.038 7 C -0.149 4.149 8 C -0.250 4.250 9 C -0.019 4.019 10 H 0.080 0.920 11 C -0.131 4.131 12 C -0.077 4.077 13 N -0.325 5.325 14 C 0.110 3.890 15 H -0.028 1.028 16 C -0.566 4.566 17 H 0.072 0.928 18 C -0.178 4.178 19 N -0.566 5.566 20 Si 0.784 3.216 21 H -0.209 1.209 22 H -0.200 1.200 23 H -0.197 1.197 24 C -0.125 4.125 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.020 0.980 35 H 0.167 0.833 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.343 11.719 -5.426 15.940 hybrid contribution 0.222 -1.871 0.927 2.100 sum 9.565 9.848 -4.499 14.447 Atomic orbital electron populations 1.20378 0.86416 1.03594 1.03233 1.22392 0.97529 0.90297 0.98347 1.77152 0.87638 1.22750 1.27743 1.46057 1.06970 1.04901 1.60211 0.70464 1.21287 0.97434 0.85197 0.99923 1.20575 0.91890 0.97798 1.04608 1.19843 0.91998 0.95860 1.17276 1.19391 0.96954 0.90264 0.95324 0.92041 1.21555 0.99508 0.95652 0.96434 1.21940 0.94362 0.96239 0.95121 1.60751 1.31924 1.37409 1.02415 1.18894 0.91211 0.91231 0.87658 1.02797 1.21523 1.25983 0.96796 1.12302 0.92837 1.25722 0.98015 0.95608 0.98463 1.69777 1.44688 1.03104 1.39014 0.85622 0.79390 0.77007 0.79617 1.20885 1.19955 1.19735 1.21579 0.97758 0.97186 0.95962 0.90736 0.90151 0.89888 0.88551 0.88724 0.90163 0.91519 0.91092 0.91371 0.97978 0.83259 0.92633 0.91822 0.94748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.32 8.61 71.24 0.61 -1.71 16 2 C 0.08 2.58 7.05 43.10 0.30 2.88 16 3 N -0.33 -10.16 12.70 -47.38 -0.60 -10.76 16 4 N -0.47 -11.39 7.36 -48.00 -0.35 -11.74 16 5 H 0.45 7.28 8.96 -213.34 -1.91 5.37 16 6 C 0.09 2.31 7.21 41.40 0.30 2.60 16 7 C -0.09 -1.58 10.11 71.24 0.72 -0.86 16 8 C -0.24 -7.54 4.82 -20.15 -0.10 -7.64 16 9 C 0.00 0.01 2.41 -11.46 -0.03 -0.01 16 10 H 0.06 2.15 6.76 -2.38 -0.02 2.13 16 11 C -0.09 -3.18 5.29 30.65 0.16 -3.02 16 12 C 0.05 2.11 6.55 86.33 0.57 2.67 16 13 N -0.69 -33.45 6.49 -495.57 -3.22 -36.66 16 14 C 0.22 11.18 2.40 44.19 0.11 11.29 16 15 H -0.05 -2.60 8.14 -2.39 -0.02 -2.62 16 16 C -0.53 -29.46 8.76 25.60 0.22 -29.24 16 17 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 18 C 0.02 1.14 5.32 84.66 0.45 1.59 16 19 N -0.92 -52.59 11.48 21.45 0.25 -52.34 16 20 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 C -0.09 -3.72 4.43 30.65 0.14 -3.58 16 25 H 0.07 2.27 7.63 -2.39 -0.02 2.25 16 26 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.08 2.58 5.21 -2.39 -0.01 2.57 16 28 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.59 7.06 -2.39 -0.02 1.58 16 31 H 0.07 2.28 5.64 -2.39 -0.01 2.27 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.35 18.46 6.65 -89.69 -0.60 17.87 16 36 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 37 H 0.06 2.72 5.30 -2.38 -0.01 2.71 16 38 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -64.69 296.24 0.13 -64.56 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: -1.43 Total: 26.17 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 3.46 Total: -25.02 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -3.93 Total: -111.51 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -64.69 0.13 -64.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727177.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.705 kcal (2) G-P(sol) polarization free energy of solvation -64.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds