Wall clock time and date at job start Mon Mar 30 2020 04:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30833 * 125.89658 * 2 1 4 4 N 1.40087 * 108.20169 * 179.97438 * 3 2 1 5 5 H 0.97003 * 126.03631 * 180.02562 * 4 3 2 6 6 C 1.34951 * 107.92914 * 359.75941 * 4 3 2 7 7 C 1.50696 * 126.13227 * 180.23634 * 6 4 3 8 8 C 1.35315 * 107.74088 * 0.39332 * 6 4 3 9 9 C 1.50699 * 126.04161 * 179.87507 * 8 6 4 10 10 H 1.09003 * 109.57103 * 6.09699 * 9 8 6 11 11 C 1.53116 * 109.52238 * 245.93973 * 9 8 6 12 12 C 1.53042 * 109.27837 * 182.43568 * 11 9 8 13 13 N 1.46825 * 109.51465 * 59.18077 * 12 11 9 14 14 C 1.46852 * 111.21114 * 298.24756 * 13 12 11 15 15 H 1.08998 * 109.46358 * 181.76146 * 14 13 12 16 16 C 1.50707 * 109.46081 * 301.74398 * 14 13 12 17 17 H 1.07999 * 120.00171 * 120.01892 * 16 14 13 18 18 C 1.37881 * 119.99443 * 300.01519 * 16 14 13 19 19 N 1.31514 * 119.99523 * 180.02562 * 18 16 14 20 20 Si 1.86795 * 120.00479 * 0.02562 * 18 16 14 21 21 H 1.48497 * 109.47011 * 89.99701 * 20 18 16 22 22 H 1.48500 * 109.47378 * 209.99962 * 20 18 16 23 23 H 1.48504 * 109.46920 * 330.00247 * 20 18 16 24 24 C 1.53037 * 109.51074 * 61.74807 * 14 13 12 25 25 H 1.09006 * 109.46653 * 266.52804 * 1 2 3 26 26 H 1.09000 * 109.46998 * 26.52348 * 1 2 3 27 27 H 1.08996 * 109.47329 * 146.53052 * 1 2 3 28 28 H 1.09000 * 109.47145 * 270.18607 * 7 6 4 29 29 H 1.09005 * 109.46798 * 30.18100 * 7 6 4 30 30 H 1.08995 * 109.47246 * 150.17714 * 7 6 4 31 31 H 1.08999 * 109.50561 * 302.37747 * 11 9 8 32 32 H 1.09002 * 109.50503 * 62.49529 * 11 9 8 33 33 H 1.09002 * 109.46433 * 179.19092 * 12 11 9 34 34 H 1.08995 * 109.46234 * 299.17641 * 12 11 9 35 35 H 1.00904 * 110.98556 * 174.15447 * 13 12 11 36 36 H 0.96999 * 119.99891 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.50225 * 60.77155 * 24 14 13 38 38 H 1.09001 * 109.50081 * 180.88405 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 0.0006 5 1 4.3908 1.2079 0.0011 6 6 3.6142 -0.7154 0.0063 7 6 4.8350 -1.5990 0.0140 8 6 2.3271 -1.1330 0.0005 9 6 1.8598 -2.5657 0.0011 10 1 2.7169 -3.2293 0.1161 11 6 1.1488 -2.8726 -1.3198 12 6 0.6235 -4.3097 -1.2889 13 7 -0.3062 -4.4680 -0.1635 14 6 0.3660 -4.2247 1.1193 15 1 -0.3404 -4.3800 1.9347 16 6 1.5231 -5.1788 1.2686 17 1 2.5269 -4.7967 1.3811 18 6 1.2999 -6.5394 1.2617 19 7 2.3095 -7.3719 1.3925 20 14 -0.4363 -7.2002 1.0665 21 1 -0.7326 -7.3950 -0.3755 22 1 -0.5543 -8.4994 1.7760 23 1 -1.4025 -6.2314 1.6437 24 6 0.8837 -2.7852 1.1601 25 1 -0.3633 -0.0622 1.0259 26 1 -0.3633 0.9195 -0.4589 27 1 -0.3634 -0.8572 -0.5667 28 1 5.1345 -1.8137 -1.0118 29 1 5.6485 -1.0901 0.5311 30 1 4.6049 -2.5320 0.5283 31 1 0.3151 -2.1832 -1.4530 32 1 1.8508 -2.7595 -2.1459 33 1 0.1041 -4.5267 -2.2223 34 1 1.4590 -4.9993 -1.1693 35 1 -0.7391 -5.3794 -0.1778 36 1 2.1526 -8.3291 1.3873 37 1 0.0458 -2.0944 1.0660 38 1 1.3963 -2.6095 2.1059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259727178.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:18 Heat of formation + Delta-G solvation = 62.624273 kcal Electronic energy + Delta-G solvation = -19159.348700 eV Core-core repulsion = 16423.647034 eV Total energy + Delta-G solvation = -2735.701666 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.14216 -37.88994 -33.48916 -32.94473 -32.01973 -30.03095 -29.69435 -27.78098 -26.52417 -25.05717 -22.70446 -21.51550 -19.86245 -19.02313 -18.65855 -16.92479 -16.13061 -15.82421 -14.87237 -14.31115 -14.06702 -13.59803 -13.36525 -13.04465 -12.77136 -12.60771 -12.37085 -12.34078 -12.16888 -12.10421 -11.75295 -11.64340 -11.32203 -10.82428 -10.64633 -10.33977 -9.90792 -9.83665 -9.58557 -9.45993 -9.07936 -8.94106 -8.65752 -7.89574 -7.17713 -6.15079 -4.14728 2.12595 3.06665 3.10440 3.18781 3.32625 3.33236 4.31518 4.92118 4.98327 5.11628 5.25580 5.48108 5.58464 5.64754 5.67563 5.76707 5.86931 5.92540 6.03667 6.07258 6.20160 6.32948 6.35954 6.45883 6.59867 6.61045 6.70686 6.86315 6.99570 7.04886 7.07156 7.28452 7.34684 7.55426 7.69794 7.99428 8.08160 8.42049 8.57200 8.90513 9.47424 10.97932 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.031205 B = 0.007331 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.080213 B = 3818.601379 C = 4284.776008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.088 3.912 3 N -0.309 5.309 4 N -0.486 5.486 5 H 0.432 0.568 6 C 0.079 3.921 7 C -0.093 4.093 8 C -0.209 4.209 9 C -0.004 4.004 10 H 0.083 0.917 11 C -0.096 4.096 12 C 0.061 3.939 13 N -0.691 5.691 14 C 0.166 3.834 15 H 0.040 0.960 16 C -0.533 4.533 17 H 0.076 0.924 18 C 0.070 3.930 19 N -0.896 5.896 20 Si 0.867 3.133 21 H -0.277 1.277 22 H -0.293 1.293 23 H -0.258 1.258 24 C -0.084 4.084 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.313 0.687 36 H 0.263 0.737 37 H 0.052 0.948 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.810 11.297 -4.210 12.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.079 4.079 3 N -0.133 5.133 4 N -0.194 5.194 5 H 0.275 0.725 6 C -0.049 4.049 7 C -0.151 4.151 8 C -0.220 4.220 9 C -0.023 4.023 10 H 0.101 0.899 11 C -0.133 4.133 12 C -0.069 4.069 13 N -0.326 5.326 14 C 0.059 3.941 15 H 0.058 0.942 16 C -0.573 4.573 17 H 0.094 0.906 18 C -0.132 4.132 19 N -0.534 5.534 20 Si 0.696 3.304 21 H -0.204 1.204 22 H -0.220 1.220 23 H -0.183 1.183 24 C -0.122 4.122 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.133 0.867 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.630 13.008 -4.241 13.696 hybrid contribution 0.259 -1.922 0.024 1.940 sum 0.889 11.085 -4.217 11.894 Atomic orbital electron populations 1.20387 0.87014 1.03104 1.03176 1.22182 0.96823 0.90255 0.98624 1.77169 0.86590 1.22589 1.26912 1.46048 1.07007 1.04809 1.61558 0.72548 1.20896 0.97211 0.84603 1.02146 1.20470 0.92530 0.98943 1.03191 1.20055 0.90714 0.97082 1.14139 1.19494 0.98854 0.88598 0.95388 0.89851 1.21511 0.98772 0.96712 0.96348 1.21669 0.96006 0.96424 0.92769 1.61196 1.33504 1.33283 1.04598 1.19637 0.93472 0.93251 0.87769 0.94219 1.21691 0.95199 0.90522 1.49883 0.90643 1.25038 0.96425 0.97197 0.94574 1.69903 1.30538 1.02828 1.50166 0.87085 0.86214 0.78707 0.78372 1.20361 1.22013 1.18303 1.21459 0.97205 0.96905 0.96665 0.90490 0.91745 0.89257 0.90470 0.91663 0.88796 0.92234 0.93278 0.93518 0.93177 0.86660 0.92702 0.92966 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 8.61 36.01 0.31 -0.79 16 2 C 0.09 1.43 7.04 -82.41 -0.58 0.85 16 3 N -0.31 -5.02 12.70 33.67 0.43 -4.60 16 4 N -0.49 -6.72 7.36 33.48 0.25 -6.47 16 5 H 0.43 4.41 8.96 -182.60 -1.64 2.77 16 6 C 0.08 1.17 7.21 -82.26 -0.59 0.57 16 7 C -0.09 -1.13 10.11 36.00 0.36 -0.76 16 8 C -0.21 -3.51 4.82 -105.05 -0.51 -4.02 16 9 C 0.00 -0.07 2.15 -91.65 -0.20 -0.27 16 10 H 0.08 1.70 5.36 -51.93 -0.28 1.42 16 11 C -0.10 -1.70 5.29 -26.65 -0.14 -1.84 16 12 C 0.06 1.23 6.30 -3.84 -0.02 1.20 16 13 N -0.69 -15.02 6.55 -108.00 -0.71 -15.72 16 14 C 0.17 3.81 2.58 -68.87 -0.18 3.63 16 15 H 0.04 0.95 7.20 -51.93 -0.37 0.58 16 16 C -0.53 -14.10 7.05 -34.44 -0.24 -14.34 16 17 H 0.08 2.15 7.01 -52.49 -0.37 1.79 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -26.40 13.96 55.43 0.77 -25.63 16 20 Si 0.87 20.83 24.60 -169.99 -4.18 16.65 16 21 H -0.28 -6.46 7.02 56.52 0.40 -6.07 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 24 C -0.08 -1.67 4.69 -26.65 -0.12 -1.80 16 25 H 0.08 1.03 7.67 -51.93 -0.40 0.63 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.09 1.27 5.16 -51.93 -0.27 1.00 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.30 7.06 -51.93 -0.37 0.93 16 31 H 0.06 1.00 5.64 -51.93 -0.29 0.71 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 1.15 6.98 -51.93 -0.36 0.78 16 35 H 0.31 7.05 4.17 -39.29 -0.16 6.89 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.05 0.95 5.30 -51.93 -0.28 0.68 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 284.83 15.07 4.29 4.29 Total: -1.00 -30.35 284.83 -7.65 -38.00 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.49 Total: 9.20 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -2.01 Total: -15.72 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.74 Total: -52.42 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.18 Total: 16.65 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.35 -7.65 -38.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727178.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.622 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds