Wall clock time and date at job start Mon Mar 30 2020 04:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30836 * 125.90038 * 2 1 4 4 N 1.40080 * 108.20588 * 180.25816 * 3 2 1 5 5 H 0.96998 * 126.03855 * 179.69721 * 4 3 2 6 6 C 1.34948 * 107.92824 * 359.72117 * 4 3 2 7 7 C 1.50699 * 126.12981 * 179.97438 * 6 4 3 8 8 C 1.35318 * 107.74394 * 0.02562 * 6 4 3 9 9 C 1.50699 * 126.04148 * 180.02562 * 8 6 4 10 10 H 1.09000 * 109.52360 * 6.57262 * 9 8 6 11 11 C 1.53124 * 109.52423 * 126.70191 * 9 8 6 12 12 C 1.53031 * 109.27754 * 177.55787 * 11 9 8 13 13 N 1.46842 * 109.52724 * 300.82230 * 12 11 9 14 14 C 1.46844 * 111.19785 * 61.74179 * 13 12 11 15 15 H 1.09006 * 109.46125 * 178.25727 * 14 13 12 16 16 C 1.50698 * 109.46457 * 58.27606 * 14 13 12 17 17 H 1.07991 * 119.99841 * 239.97715 * 16 14 13 18 18 C 1.37879 * 119.99803 * 59.70461 * 16 14 13 19 19 N 1.31513 * 119.99913 * 0.27030 * 18 16 14 20 20 Si 1.86797 * 119.99858 * 180.27867 * 18 16 14 21 21 H 1.48494 * 109.47299 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47317 * 120.00128 * 20 18 16 23 23 H 1.48507 * 109.46961 * 239.99703 * 20 18 16 24 24 C 1.53039 * 109.51618 * 298.26183 * 14 13 12 25 25 H 1.08998 * 109.47033 * 265.14020 * 1 2 3 26 26 H 1.08997 * 109.47121 * 25.14369 * 1 2 3 27 27 H 1.08994 * 109.46968 * 145.14045 * 1 2 3 28 28 H 1.08996 * 109.47292 * 270.02764 * 7 6 4 29 29 H 1.08999 * 109.46972 * 30.03134 * 7 6 4 30 30 H 1.09005 * 109.46725 * 150.02986 * 7 6 4 31 31 H 1.09006 * 109.50053 * 57.61809 * 11 9 8 32 32 H 1.09001 * 109.53400 * 297.52077 * 11 9 8 33 33 H 1.09001 * 109.45915 * 180.80112 * 12 11 9 34 34 H 1.09000 * 109.45179 * 60.83272 * 12 11 9 35 35 H 1.00904 * 110.99857 * 297.64387 * 13 12 11 36 36 H 0.97006 * 119.99787 * 180.02562 * 19 18 16 37 37 H 1.08994 * 109.50237 * 179.11544 * 24 14 13 38 38 H 1.08998 * 109.50197 * 299.24107 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0060 5 1 4.3908 1.2079 -0.0115 6 6 3.6143 -0.7154 -0.0033 7 6 4.8350 -1.5990 -0.0084 8 6 2.3272 -1.1331 0.0035 9 6 1.8599 -2.5658 0.0091 10 1 2.7178 -3.2282 0.1244 11 6 0.8865 -2.7821 1.1712 12 6 0.3688 -4.2217 1.1353 13 7 -0.3067 -4.4686 -0.1450 14 6 0.6204 -4.3132 -1.2731 15 1 0.0988 -4.5325 -2.2048 16 6 1.7761 -5.2662 -1.1083 17 1 2.7840 -4.8852 -1.0360 18 6 1.5461 -6.6241 -1.0442 19 7 0.3186 -7.0880 -1.1322 20 14 2.9778 -7.8050 -0.8322 21 1 4.2466 -7.0367 -0.7600 22 1 2.7973 -8.5821 0.4202 23 1 3.0279 -8.7350 -1.9889 24 6 1.1456 -2.8762 -1.3090 25 1 -0.3633 -0.0871 1.0240 26 1 -0.3633 0.9303 -0.4366 27 1 -0.3633 -0.8432 -0.5873 28 1 5.1239 -1.8136 -1.0372 29 1 5.6538 -1.0902 0.5004 30 1 4.6102 -2.5322 0.5082 31 1 0.0484 -2.0914 1.0771 32 1 1.4009 -2.6037 2.1155 33 1 -0.3355 -4.3748 1.9530 34 1 1.2060 -4.9113 1.2431 35 1 -1.1101 -3.8676 -0.2517 36 1 0.1567 -8.0434 -1.0868 37 1 1.8457 -2.7652 -2.1369 38 1 0.3115 -2.1871 -1.4419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259727180.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:22 Heat of formation + Delta-G solvation = 60.075694 kcal Electronic energy + Delta-G solvation = -19124.290542 eV Core-core repulsion = 16388.478362 eV Total energy + Delta-G solvation = -2735.812180 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.17494 -37.77260 -33.34202 -32.84028 -31.83184 -29.71750 -29.41240 -27.76465 -26.46501 -25.06459 -22.35056 -21.40183 -19.90121 -19.22291 -18.82903 -16.83341 -15.82064 -14.92848 -14.62882 -14.55680 -13.96443 -13.44879 -13.41113 -13.16339 -12.89134 -12.58300 -12.39022 -12.28275 -12.06272 -11.84170 -11.63697 -11.17512 -10.91337 -10.84787 -10.64236 -10.44266 -10.17862 -9.82428 -9.48927 -9.38352 -8.98872 -8.73702 -8.29984 -7.88834 -6.63970 -5.78760 -3.89645 2.09118 3.03463 3.06958 3.35048 3.44172 3.45312 4.53351 4.87796 4.94150 5.20319 5.41282 5.52239 5.61606 5.65095 5.73526 5.79906 5.91041 5.96782 5.99446 6.03260 6.16695 6.34237 6.42340 6.51097 6.54914 6.71204 6.76433 6.92045 7.06147 7.12857 7.20318 7.34141 7.51948 7.72533 7.95594 7.98158 8.31991 8.73455 9.00691 9.30997 9.76254 11.26180 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027261 B = 0.007496 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.875463 B = 3734.555419 C = 4387.205503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.085 3.915 3 N -0.308 5.308 4 N -0.485 5.485 5 H 0.432 0.568 6 C 0.076 3.924 7 C -0.091 4.091 8 C -0.209 4.209 9 C 0.001 3.999 10 H 0.081 0.919 11 C -0.145 4.145 12 C 0.075 3.925 13 N -0.649 5.649 14 C 0.216 3.784 15 H 0.037 0.963 16 C -0.523 4.523 17 H 0.053 0.947 18 C 0.082 3.918 19 N -0.849 5.849 20 Si 0.873 3.127 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.287 1.287 24 C -0.132 4.132 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.296 0.704 36 H 0.253 0.747 37 H 0.047 0.953 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.411 11.367 3.290 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 N -0.132 5.132 4 N -0.194 5.194 5 H 0.274 0.726 6 C -0.051 4.051 7 C -0.150 4.150 8 C -0.219 4.219 9 C -0.018 4.018 10 H 0.099 0.901 11 C -0.185 4.185 12 C -0.055 4.055 13 N -0.275 5.275 14 C 0.109 3.891 15 H 0.055 0.945 16 C -0.562 4.562 17 H 0.071 0.929 18 C -0.124 4.124 19 N -0.484 5.484 20 Si 0.701 3.299 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.213 1.213 24 C -0.171 4.171 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.375 11.743 3.312 12.962 hybrid contribution 1.479 -0.156 0.147 1.495 sum 5.854 11.587 3.460 13.435 Atomic orbital electron populations 1.20362 0.87199 1.03145 1.02872 1.22151 0.96748 0.90340 0.98858 1.77159 0.86624 1.22586 1.26832 1.46037 1.06977 1.04813 1.61583 0.72553 1.20886 0.97212 0.84594 1.02414 1.20447 0.92452 0.98619 1.03443 1.20167 0.90706 0.97360 1.13705 1.19439 0.98503 0.88215 0.95690 0.90079 1.22400 0.98696 1.00221 0.97206 1.21725 0.98518 0.92844 0.92420 1.60801 1.08642 1.56475 1.01622 1.19159 0.91438 0.88102 0.90425 0.94500 1.20922 0.92012 0.90719 1.52557 0.92911 1.24938 0.94569 0.98116 0.94802 1.70103 1.18508 1.12374 1.47412 0.86876 0.83626 0.81806 0.77598 1.20003 1.21228 1.21283 1.22360 0.98544 1.00549 0.95695 0.90679 0.91588 0.89569 0.90245 0.91759 0.89142 0.92972 0.93718 0.94028 0.90314 0.88836 0.93730 0.93380 0.94562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 8.61 36.01 0.31 -0.77 16 2 C 0.09 1.41 7.04 -82.40 -0.58 0.83 16 3 N -0.31 -5.05 12.70 33.67 0.43 -4.62 16 4 N -0.49 -6.76 7.36 33.48 0.25 -6.51 16 5 H 0.43 4.43 8.96 -182.61 -1.64 2.79 16 6 C 0.08 1.13 7.21 -82.26 -0.59 0.54 16 7 C -0.09 -1.09 10.11 36.01 0.36 -0.73 16 8 C -0.21 -3.53 4.82 -105.05 -0.51 -4.03 16 9 C 0.00 0.02 2.16 -91.66 -0.20 -0.18 16 10 H 0.08 1.62 5.36 -51.93 -0.28 1.34 16 11 C -0.15 -2.58 5.20 -26.65 -0.14 -2.72 16 12 C 0.08 1.55 6.30 -3.84 -0.02 1.53 16 13 N -0.65 -14.71 5.97 -107.99 -0.64 -15.35 16 14 C 0.22 5.14 2.95 -68.88 -0.20 4.94 16 15 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.52 -13.61 6.47 -34.44 -0.22 -13.83 16 17 H 0.05 1.36 6.76 -52.49 -0.35 1.01 16 18 C 0.08 2.21 5.39 -17.82 -0.10 2.11 16 19 N -0.85 -24.23 12.76 55.43 0.71 -23.52 16 20 Si 0.87 20.76 29.54 -169.99 -5.02 15.74 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C -0.13 -2.64 4.75 -26.66 -0.13 -2.77 16 25 H 0.07 0.96 7.58 -51.93 -0.39 0.57 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.23 5.25 -51.93 -0.27 0.96 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.16 7.06 -51.93 -0.37 0.80 16 31 H 0.05 0.86 5.31 -51.93 -0.28 0.58 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.83 6.99 -51.93 -0.36 1.47 16 35 H 0.30 6.09 8.86 -39.29 -0.35 5.74 16 36 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.04 0.67 5.62 -51.93 -0.29 0.38 16 LS Contribution 293.71 15.07 4.43 4.43 Total: -1.00 -30.14 293.71 -8.55 -38.68 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.68 Total: 6.25 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.02 Total: -15.09 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.74 Total: -50.01 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.14 -8.55 -38.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259727180.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.760 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds