Wall clock time and date at job start Mon Mar 30 2020 03:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30840 * 125.89961 * 2 1 4 4 N 1.40084 * 108.20947 * 179.97438 * 3 2 1 5 5 C 1.46507 * 126.03704 * 180.02562 * 4 3 2 6 6 C 1.34941 * 107.92222 * 359.75540 * 4 3 2 7 7 C 1.35319 * 107.74824 * 0.39436 * 6 4 3 8 8 C 1.50698 * 126.03978 * 179.87437 * 7 6 4 9 9 C 1.53001 * 110.01131 * 3.56758 * 8 7 6 10 10 N 1.47735 * 110.06383 * 242.38131 * 8 7 6 11 11 C 1.47844 * 108.59669 * 241.80900 * 10 8 7 12 12 C 1.54909 * 104.80027 * 335.75034 * 11 10 8 13 13 C 1.54322 * 109.88824 * 124.68470 * 8 7 6 14 14 H 1.08994 * 110.70722 * 23.13278 * 13 8 7 15 15 C 1.50702 * 110.70525 * 260.07004 * 13 8 7 16 16 H 1.08002 * 119.99925 * 330.88564 * 15 13 8 17 17 C 1.37875 * 119.99814 * 150.60972 * 15 13 8 18 18 N 1.31513 * 119.99813 * 0.27717 * 17 15 13 19 19 Si 1.86802 * 119.99928 * 180.27264 * 17 15 13 20 20 H 1.48500 * 109.46699 * 60.00223 * 19 17 15 21 21 H 1.48497 * 109.46905 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47250 * 300.00551 * 19 17 15 23 23 H 1.08997 * 109.47209 * 264.26036 * 1 2 3 24 24 H 1.08999 * 109.47031 * 24.26229 * 1 2 3 25 25 H 1.08997 * 109.46954 * 144.26077 * 1 2 3 26 26 H 1.08997 * 109.47024 * 90.02008 * 5 4 3 27 27 H 1.08999 * 109.46734 * 210.02702 * 5 4 3 28 28 H 1.09000 * 109.46813 * 330.02128 * 5 4 3 29 29 H 1.08004 * 126.12638 * 180.23854 * 6 4 3 30 30 H 1.09000 * 109.47367 * 174.76280 * 9 8 7 31 31 H 1.08993 * 109.47320 * 294.76760 * 9 8 7 32 32 H 1.09001 * 109.46824 * 54.76552 * 9 8 7 33 33 H 1.00901 * 111.10599 * 119.45802 * 10 8 7 34 34 H 1.09008 * 110.37339 * 216.92303 * 11 10 8 35 35 H 1.09000 * 110.47170 * 94.63156 * 11 10 8 36 36 H 1.08998 * 110.99238 * 278.98500 * 12 11 10 37 37 H 1.08993 * 111.02485 * 155.17389 * 12 11 10 38 38 H 0.97004 * 119.99547 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 6 4.7899 1.5010 0.0013 6 6 3.6142 -0.7152 0.0064 7 6 2.3272 -1.1329 0.0006 8 6 1.8600 -2.5657 0.0013 9 6 3.0614 -3.5081 0.0992 10 7 1.0978 -2.8509 -1.2317 11 6 -0.2826 -3.2247 -0.8568 12 6 -0.1689 -3.7535 0.5948 13 6 0.9059 -2.8062 1.1901 14 1 0.4550 -1.8696 1.5180 15 6 1.6321 -3.4735 2.3296 16 1 2.4726 -4.1213 2.1288 17 6 1.2269 -3.2525 3.6289 18 7 0.2034 -2.4637 3.8733 19 14 2.1318 -4.0736 5.0418 20 1 3.5545 -3.6480 5.0323 21 1 1.5054 -3.6763 6.3282 22 1 2.0554 -5.5487 4.8880 23 1 -0.3633 -0.1028 1.0225 24 1 -0.3633 0.9369 -0.4223 25 1 -0.3633 -0.8341 -0.6002 26 1 5.0825 1.7155 1.0292 27 1 5.6094 0.9986 -0.5126 28 1 4.5564 2.4337 -0.5121 29 1 4.4892 -1.3484 0.0120 30 1 2.7104 -4.5358 0.1927 31 1 3.6719 -3.4129 -0.7987 32 1 3.6577 -3.2468 0.9734 33 1 1.5372 -3.5829 -1.7694 34 1 -0.6566 -4.0070 -1.5174 35 1 -0.9367 -2.3536 -0.8932 36 1 0.1726 -4.7885 0.6078 37 1 -1.1163 -3.6505 1.1238 38 1 -0.0813 -2.3080 4.7875 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259986293.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:54 Heat of formation + Delta-G solvation = 61.342360 kcal Electronic energy + Delta-G solvation = -19350.886575 eV Core-core repulsion = 16615.129321 eV Total energy + Delta-G solvation = -2735.757254 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.12798 -39.55627 -34.67614 -34.51249 -33.08696 -30.85521 -30.24146 -29.65662 -26.82187 -26.47794 -25.21187 -22.51059 -21.41174 -20.72131 -19.66534 -18.09068 -17.52127 -16.58348 -16.55232 -16.05085 -15.78770 -14.86783 -14.63035 -14.47520 -14.10149 -13.92698 -13.84262 -13.32535 -13.19029 -13.06077 -12.87385 -12.86152 -12.77405 -12.55266 -12.33280 -12.02297 -11.66632 -11.56063 -11.21313 -10.89062 -10.57339 -10.40079 -9.93172 -9.14466 -8.93787 -8.04429 -6.08492 1.12690 1.41407 1.41565 1.48341 1.88285 2.04748 2.46370 3.26900 3.64195 3.87294 4.08298 4.31838 4.36788 4.39619 4.49278 4.53431 4.62774 4.67166 4.70726 4.78117 4.78911 4.93088 5.00993 5.16234 5.23330 5.26551 5.29696 5.48781 5.54595 5.57570 5.68522 5.79459 6.02669 6.06538 6.29696 6.39036 6.52248 6.86119 6.99514 7.08898 7.55889 9.05158 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.009621 C = 0.007983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.434804 B = 2909.622266 C = 3506.582521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.077 3.923 3 N -0.344 5.344 4 N -0.387 5.387 5 C 0.099 3.901 6 C 0.044 3.956 7 C -0.196 4.196 8 C 0.179 3.821 9 C -0.131 4.131 10 N -0.675 5.675 11 C 0.052 3.948 12 C -0.142 4.142 13 C 0.034 3.966 14 H 0.037 0.963 15 C -0.510 4.510 16 H 0.068 0.932 17 C 0.009 3.991 18 N -0.927 5.927 19 Si 0.941 3.059 20 H -0.272 1.272 21 H -0.294 1.294 22 H -0.270 1.270 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.195 0.805 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.339 0.661 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.163 1.578 -9.642 12.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 N -0.169 5.169 4 N -0.170 5.170 5 C -0.041 4.041 6 C -0.102 4.102 7 C -0.207 4.207 8 C 0.087 3.913 9 C -0.190 4.190 10 N -0.304 5.304 11 C -0.077 4.077 12 C -0.181 4.181 13 C 0.014 3.986 14 H 0.055 0.945 15 C -0.548 4.548 16 H 0.086 0.914 17 C -0.188 4.188 18 N -0.567 5.567 19 Si 0.768 3.232 20 H -0.197 1.197 21 H -0.220 1.220 22 H -0.195 1.195 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.111 0.889 26 H 0.093 0.907 27 H 0.133 0.867 28 H 0.109 0.891 29 H 0.211 0.789 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.156 0.844 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.114 3.701 -9.676 12.567 hybrid contribution 0.237 -1.987 1.791 2.686 sum 7.351 1.714 -7.885 10.915 Atomic orbital electron populations 1.20306 0.87221 1.03317 1.01937 1.22285 0.97257 0.90765 0.98537 1.77053 0.87969 1.23520 1.28315 1.48537 1.05387 1.05180 1.57941 1.22086 0.83144 0.94962 1.03893 1.22601 0.99596 0.85007 1.02995 1.20013 0.91871 0.95813 1.13042 1.19787 0.93719 0.88683 0.89066 1.22048 0.97515 0.98482 1.00913 1.61731 1.02498 1.46129 1.20009 1.22876 0.91199 0.99043 0.94632 1.23137 0.99435 0.99312 0.96250 1.19984 0.91782 0.95393 0.91400 0.94500 1.21664 1.14775 1.27083 0.91285 0.91367 1.25720 0.95873 0.95885 1.01350 1.70080 1.27856 1.38870 1.19941 0.85874 0.79041 0.79280 0.79029 1.19726 1.22000 1.19475 0.92774 0.91077 0.88883 0.90693 0.86667 0.89083 0.78864 0.93247 0.91890 0.92604 0.84415 0.90385 0.91423 0.93434 0.94660 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.76 8.96 71.24 0.64 -2.12 16 2 C 0.08 3.26 6.92 43.10 0.30 3.56 16 3 N -0.34 -14.14 12.58 -47.39 -0.60 -14.74 16 4 N -0.39 -13.13 4.01 -369.55 -1.48 -14.61 16 5 C 0.10 2.10 11.47 127.77 1.47 3.57 16 6 C 0.04 1.53 10.46 83.54 0.87 2.40 16 7 C -0.20 -7.95 5.04 -20.14 -0.10 -8.05 16 8 C 0.18 7.05 0.92 3.07 0.00 7.05 16 9 C -0.13 -4.58 5.83 71.98 0.42 -4.16 16 10 N -0.67 -23.21 6.65 -464.26 -3.09 -26.29 16 11 C 0.05 1.77 6.96 86.77 0.60 2.38 16 12 C -0.14 -6.10 6.52 31.98 0.21 -5.89 16 13 C 0.03 1.64 2.13 -10.35 -0.02 1.61 16 14 H 0.04 2.04 4.82 -2.39 -0.01 2.02 16 15 C -0.51 -26.76 7.47 25.60 0.19 -26.57 16 16 H 0.07 3.41 5.38 -2.91 -0.02 3.40 16 17 C 0.01 0.52 5.46 84.65 0.46 0.98 16 18 N -0.93 -55.00 12.87 21.45 0.28 -54.73 16 19 Si 0.94 43.71 29.54 68.60 2.03 45.74 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H 0.05 2.39 7.29 -2.39 -0.02 2.37 16 24 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.09 3.53 4.47 -2.39 -0.01 3.52 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.19 5.28 7.36 -2.91 -0.02 5.26 16 30 H 0.05 1.74 7.59 -2.39 -0.02 1.72 16 31 H 0.06 1.78 8.12 -2.39 -0.02 1.76 16 32 H 0.05 2.08 6.67 -2.39 -0.02 2.07 16 33 H 0.34 10.07 8.23 -89.69 -0.74 9.33 16 34 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.07 2.36 5.84 -2.39 -0.01 2.34 16 36 H 0.05 2.02 8.04 -2.39 -0.02 2.00 16 37 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -67.60 296.07 2.51 -65.09 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.33 Total: 24.79 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 5.04 Total: -25.24 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -4.89 Total: -110.37 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -67.60 2.51 -65.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259986293.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.429 kcal (2) G-P(sol) polarization free energy of solvation -67.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds