Wall clock time and date at job start Mon Mar 30 2020 03:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30741 * 125.87923 * 2 1 4 4 N 1.39999 * 108.21179 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03041 * 180.02562 * 4 3 2 6 6 C 1.35221 * 107.94002 * 359.97438 * 4 3 2 7 7 C 1.35132 * 107.74402 * 359.97438 * 6 4 3 8 8 C 1.51367 * 110.24480 * 179.97438 * 7 6 4 9 9 C 1.50695 * 110.33513 * 224.08159 * 8 7 6 10 10 H 1.08006 * 120.00016 * 237.75958 * 9 8 7 11 11 C 1.37867 * 120.00365 * 57.75315 * 9 8 7 12 12 N 1.31520 * 120.00211 * 353.59152 * 11 9 8 13 13 Si 1.86807 * 120.00105 * 173.58650 * 11 9 8 14 14 H 1.48496 * 109.46979 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46964 * 120.00303 * 13 11 9 16 16 H 1.48505 * 109.47032 * 240.00327 * 13 11 9 17 17 C 1.52999 * 110.32952 * 101.94899 * 8 7 6 18 18 N 1.46896 * 109.47642 * 62.49672 * 17 8 7 19 19 C 1.54437 * 105.09835 * 343.01636 * 8 7 6 20 20 H 1.09003 * 110.92204 * 267.60719 * 19 8 7 21 21 C 1.52993 * 110.92810 * 143.94894 * 19 8 7 22 22 C 1.51318 * 141.94619 * 180.02562 * 6 4 3 23 23 H 1.08997 * 109.47312 * 275.08512 * 1 2 3 24 24 H 1.09009 * 109.47061 * 35.08597 * 1 2 3 25 25 H 1.09000 * 109.47100 * 155.07676 * 1 2 3 26 26 H 1.09000 * 109.47294 * 89.96973 * 5 4 3 27 27 H 1.08994 * 109.47109 * 209.97345 * 5 4 3 28 28 H 1.09011 * 109.46843 * 329.97300 * 5 4 3 29 29 H 0.96993 * 120.00195 * 185.00186 * 12 11 9 30 30 H 1.09005 * 109.47431 * 302.49255 * 17 8 7 31 31 H 1.09005 * 109.46915 * 182.49763 * 17 8 7 32 32 H 1.00891 * 111.00611 * 173.43859 * 18 17 8 33 33 H 1.00902 * 111.00052 * 297.40160 * 18 17 8 34 34 H 1.09006 * 109.46965 * 60.00033 * 21 19 8 35 35 H 1.09002 * 109.47470 * 179.97438 * 21 19 8 36 36 H 1.09000 * 109.47392 * 300.00476 * 21 19 8 37 37 H 1.08997 * 110.34245 * 315.78345 * 22 6 4 38 38 H 1.09002 * 110.33646 * 77.91993 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2732 1.0593 0.0000 4 7 3.6071 0.6344 -0.0006 5 6 4.7878 1.5018 -0.0003 6 6 3.6136 -0.7177 -0.0004 7 6 2.3285 -1.1357 0.0009 8 6 2.2697 -2.6482 0.0006 9 6 1.2339 -3.1318 -0.9814 10 1 0.4199 -3.7562 -0.6441 11 6 1.3254 -2.7770 -2.3105 12 7 2.2407 -1.9166 -2.7001 13 14 0.1495 -3.5185 -3.5583 14 1 -0.7787 -4.4514 -2.8702 15 1 -0.6304 -2.4348 -4.2084 16 1 0.9224 -4.2584 -4.5881 17 6 1.9537 -3.1682 1.4044 18 7 0.6290 -2.6869 1.8183 19 6 3.6785 -3.1055 -0.4366 20 1 3.7234 -3.2496 -1.5161 21 6 4.0925 -4.3805 0.3007 22 6 4.5520 -1.9048 -0.0002 23 1 -0.3634 0.0911 1.0236 24 1 -0.3634 0.8410 -0.5908 25 1 -0.3633 -0.9320 -0.4331 26 1 5.0806 1.7167 1.0275 27 1 5.6075 0.9999 -0.5142 28 1 4.5537 2.4344 -0.5139 29 1 2.2592 -1.6117 -3.6206 30 1 2.7069 -2.8059 2.1042 31 1 1.9585 -4.2582 1.3977 32 1 0.3511 -3.1019 2.6949 33 1 0.6112 -1.6795 1.8734 34 1 3.3813 -5.1761 0.0781 35 1 5.0880 -4.6819 -0.0254 36 1 4.1028 -4.1924 1.3743 37 1 5.3615 -1.7480 -0.7130 38 1 4.9547 -2.0692 0.9992 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260374397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:56 Heat of formation + Delta-G solvation = 68.135640 kcal Electronic energy + Delta-G solvation = -19833.468753 eV Core-core repulsion = 17098.006078 eV Total energy + Delta-G solvation = -2735.462675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.17561 -38.58454 -34.87800 -34.12848 -33.74657 -31.09597 -29.96706 -29.38065 -26.64644 -26.12681 -25.21317 -23.42277 -20.49384 -19.94650 -19.77699 -18.04352 -16.90654 -16.45550 -16.18934 -15.99210 -15.54255 -14.94202 -14.52348 -14.10571 -13.95445 -13.91242 -13.69563 -13.54518 -13.18212 -12.93939 -12.82867 -12.55019 -12.49773 -12.41278 -12.27995 -12.06055 -11.67779 -11.61627 -11.04089 -10.86161 -10.38815 -10.16566 -9.52345 -9.12707 -8.52959 -7.67796 -5.83270 1.33699 1.44038 1.50604 1.58195 1.93457 2.45566 2.61322 3.45605 3.81263 4.06823 4.18657 4.31916 4.43758 4.48297 4.52738 4.63427 4.64915 4.73057 4.82783 4.90792 4.91074 4.96161 5.04262 5.13150 5.22067 5.28221 5.39841 5.56098 5.79171 5.82255 5.97011 6.02975 6.17255 6.42196 6.60669 6.65380 6.83741 7.01826 7.22758 7.27265 7.78020 9.21415 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.011495 C = 0.010442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.939472 B = 2435.358760 C = 2680.788280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.076 3.924 3 N -0.347 5.347 4 N -0.380 5.380 5 C 0.105 3.895 6 C 0.011 3.989 7 C -0.156 4.156 8 C 0.132 3.868 9 C -0.468 4.468 10 H 0.048 0.952 11 C 0.028 3.972 12 N -0.892 5.892 13 Si 0.919 3.081 14 H -0.271 1.271 15 H -0.299 1.299 16 H -0.292 1.292 17 C 0.094 3.906 18 N -0.841 5.841 19 C -0.075 4.075 20 H 0.063 0.937 21 C -0.129 4.129 22 C -0.019 4.019 23 H 0.081 0.919 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.241 0.759 30 H 0.005 0.995 31 H 0.065 0.935 32 H 0.335 0.665 33 H 0.333 0.667 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.066 0.632 8.168 9.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.087 4.087 3 N -0.171 5.171 4 N -0.164 5.164 5 C -0.036 4.036 6 C -0.114 4.114 7 C -0.167 4.167 8 C 0.131 3.869 9 C -0.507 4.507 10 H 0.066 0.934 11 C -0.170 4.170 12 N -0.532 5.532 13 Si 0.749 3.251 14 H -0.195 1.195 15 H -0.226 1.226 16 H -0.219 1.219 17 C -0.037 4.037 18 N -0.371 5.371 19 C -0.095 4.095 20 H 0.081 0.919 21 C -0.186 4.186 22 C -0.058 4.058 23 H 0.100 0.900 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.023 0.977 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.075 1.688 7.323 9.068 hybrid contribution -0.195 -0.308 -0.670 0.762 sum 4.880 1.379 6.653 8.366 Atomic orbital electron populations 1.20018 0.87078 1.02217 1.02012 1.21929 0.96880 0.90241 0.99675 1.76954 0.86939 1.23195 1.30037 1.47821 1.04954 1.03356 1.60293 1.21867 0.83753 0.94506 1.03467 1.21999 1.00243 0.85035 1.04136 1.20994 0.90755 0.97246 1.07708 1.17328 0.92526 0.85812 0.91279 1.21100 1.09212 1.29093 0.91264 0.93358 1.25326 0.96284 0.95965 0.99467 1.70165 1.35053 1.32124 1.15813 0.86113 0.80130 0.78306 0.80564 1.19546 1.22619 1.21902 1.21734 0.88035 0.98621 0.95325 1.58537 1.29890 1.12146 1.36492 1.21935 0.94640 0.92709 1.00202 0.91906 1.21736 1.00444 0.96665 0.99783 1.20708 0.95134 0.89186 1.00798 0.90024 0.92874 0.90979 0.89979 0.89153 0.89970 0.94980 0.97739 0.91672 0.85312 0.85425 0.93055 0.92455 0.92025 0.92353 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.23 9.50 71.23 0.68 -1.55 16 2 C 0.08 3.54 6.78 43.19 0.29 3.84 16 3 N -0.35 -15.94 12.57 -47.25 -0.59 -16.54 16 4 N -0.38 -15.77 4.02 -355.25 -1.43 -17.20 16 5 C 0.11 3.06 11.47 127.77 1.47 4.53 16 6 C 0.01 0.50 7.58 41.52 0.31 0.81 16 7 C -0.16 -7.20 3.27 -19.90 -0.07 -7.26 16 8 C 0.13 5.88 0.38 -52.98 -0.02 5.86 16 9 C -0.47 -23.83 7.23 25.60 0.18 -23.65 16 10 H 0.05 2.56 7.72 -2.91 -0.02 2.54 16 11 C 0.03 1.50 4.88 84.65 0.41 1.91 16 12 N -0.89 -49.69 10.67 21.44 0.23 -49.46 16 13 Si 0.92 44.01 29.55 68.60 2.03 46.04 16 14 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 15 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 16 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 17 C 0.09 3.54 4.45 86.30 0.38 3.92 16 18 N -0.84 -30.04 9.12 -186.72 -1.70 -31.74 16 19 C -0.07 -3.09 2.73 -9.71 -0.03 -3.12 16 20 H 0.06 3.11 6.33 -2.39 -0.02 3.09 16 21 C -0.13 -4.22 7.98 71.98 0.57 -3.64 16 22 C -0.02 -0.72 6.35 30.64 0.19 -0.52 16 23 H 0.08 2.82 7.70 -2.39 -0.02 2.80 16 24 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.07 3.25 7.58 -2.39 -0.02 3.23 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 29 H 0.24 13.55 8.32 -92.71 -0.77 12.78 16 30 H 0.00 0.16 7.70 -2.38 -0.02 0.15 16 31 H 0.06 2.39 6.85 -2.38 -0.02 2.37 16 32 H 0.33 9.70 9.08 -89.70 -0.81 8.89 16 33 H 0.33 12.17 6.35 -89.69 -0.57 11.60 16 34 H 0.05 1.74 7.80 -2.38 -0.02 1.72 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.78 6.62 -2.39 -0.02 1.76 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 2.68 7.85 -2.39 -0.02 2.66 16 Total: -1.00 -63.82 298.58 2.61 -61.21 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: -0.31 Total: 26.56 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 4.39 Total: -18.87 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -3.50 Total: -114.93 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -63.82 2.61 -61.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260374397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.342 kcal (2) G-P(sol) polarization free energy of solvation -63.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds