Wall clock time and date at job start Mon Mar 30 2020 04:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.34297 * 125.96514 * 2 1 4 4 C 1.30088 * 109.21209 * 180.12847 * 3 2 1 5 5 N 1.35419 * 108.62884 * 359.67578 * 4 3 2 6 6 C 1.34855 * 125.96682 * 179.73034 * 2 1 3 7 7 C 1.50703 * 126.65215 * 359.96133 * 6 2 1 8 8 H 1.08995 * 109.47123 * 195.02173 * 7 6 2 9 9 N 1.46897 * 109.47268 * 315.02587 * 7 6 2 10 10 C 1.50697 * 109.46972 * 75.02414 * 7 6 2 11 11 H 1.08006 * 120.00346 * 0.02562 * 10 7 6 12 12 C 1.37885 * 120.00037 * 179.97438 * 10 7 6 13 13 N 1.31513 * 119.99428 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00052 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47239 * 60.00021 * 14 12 10 16 16 H 1.48504 * 109.46735 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46955 * 299.99698 * 14 12 10 18 18 C 1.46475 * 124.82485 * 180.13543 * 5 4 3 19 19 C 1.53265 * 108.79305 * 342.87860 * 18 5 4 20 20 C 1.53143 * 109.49941 * 50.37528 * 19 18 5 21 21 H 1.09004 * 109.51241 * 50.44774 * 20 19 18 22 22 C 1.53001 * 109.51111 * 170.58998 * 20 19 18 23 23 C 1.51046 * 127.38957 * 179.97438 * 4 3 2 24 24 H 1.09004 * 109.46918 * 270.27028 * 1 2 3 25 25 H 1.09005 * 109.47490 * 30.26829 * 1 2 3 26 26 H 1.09002 * 109.47390 * 150.27016 * 1 2 3 27 27 H 1.00900 * 110.99865 * 296.04796 * 9 7 6 28 28 H 1.00900 * 110.99903 * 59.99743 * 9 7 6 29 29 H 0.97008 * 119.99353 * 179.97438 * 13 12 10 30 30 H 1.08999 * 109.58502 * 223.07887 * 18 5 4 31 31 H 1.09001 * 109.69393 * 102.73448 * 18 5 4 32 32 H 1.08999 * 109.46645 * 290.36414 * 19 18 5 33 33 H 1.09002 * 109.45817 * 170.38253 * 19 18 5 34 34 H 1.09000 * 109.47334 * 179.76462 * 22 20 19 35 35 H 1.08994 * 109.46801 * 299.76428 * 22 20 19 36 36 H 1.08995 * 109.46907 * 59.76449 * 22 20 19 37 37 H 1.09005 * 109.71250 * 283.41660 * 23 4 3 38 38 H 1.08999 * 109.71418 * 44.01143 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2957 1.0870 0.0000 4 6 3.5413 0.7120 -0.0028 5 7 3.5857 -0.6415 0.0026 6 6 2.2990 -1.0914 0.0051 7 6 1.8488 -2.5296 0.0127 8 1 2.6876 -3.1715 0.2819 9 7 0.7680 -2.6993 0.9931 10 6 1.3476 -2.9063 -1.3576 11 1 1.3548 -2.1773 -2.1546 12 6 0.8809 -4.1820 -1.5945 13 7 0.8726 -5.0697 -0.6242 14 14 0.2603 -4.6491 -3.2933 15 1 1.3530 -4.4773 -4.2840 16 1 -0.1834 -6.0663 -3.2857 17 1 -0.8827 -3.7750 -3.6603 18 6 4.8148 -1.4381 0.0045 19 6 5.9829 -0.5448 -0.4275 20 6 5.9743 0.7437 0.4002 21 1 5.9061 0.4956 1.4594 22 6 7.2626 1.5269 0.1398 23 6 4.7655 1.5968 -0.0043 24 1 -0.3633 0.0048 1.0277 25 1 -0.3634 0.8876 -0.5180 26 1 -0.3634 -0.8924 -0.5096 27 1 1.0966 -2.5149 1.9290 28 1 -0.0218 -2.1142 0.7653 29 1 0.5439 -5.9671 -0.7907 30 1 4.7127 -2.2691 -0.6934 31 1 5.0011 -1.8237 1.0069 32 1 5.8802 -0.2984 -1.4843 33 1 6.9227 -1.0732 -0.2674 34 1 7.2540 2.4458 0.7260 35 1 8.1211 0.9202 0.4279 36 1 7.3306 1.7725 -0.9199 37 1 4.9221 2.0060 -1.0025 38 1 4.6326 2.4096 0.7096 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260454213.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:58 Heat of formation + Delta-G solvation = 20.791449 kcal Electronic energy + Delta-G solvation = -18895.184368 eV Core-core repulsion = 16157.668695 eV Total energy + Delta-G solvation = -2737.515673 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.22421 -38.32027 -36.56214 -34.66286 -33.72919 -31.74268 -30.19128 -29.13057 -28.25218 -26.30364 -24.77924 -23.24342 -21.82168 -20.58690 -19.87594 -18.55786 -17.48682 -16.77268 -16.58050 -16.07922 -15.67820 -15.36584 -15.00352 -14.72912 -14.39346 -14.30714 -13.95686 -13.59695 -13.46647 -13.15364 -12.92771 -12.85564 -12.76108 -12.68342 -12.39236 -12.06117 -11.88763 -11.71300 -11.59940 -11.34181 -10.81056 -10.55582 -10.25543 -9.18292 -8.73381 -8.01547 -6.23247 1.24154 1.41771 1.43964 1.51152 2.02550 2.17728 2.46268 3.21671 3.37007 3.63175 3.71092 3.72440 4.15510 4.23555 4.37583 4.41835 4.43180 4.50320 4.53563 4.68827 4.76369 4.82186 4.83884 4.86441 4.96558 4.97481 5.09806 5.15386 5.29180 5.42017 5.45604 5.67754 5.73144 5.94432 6.13511 6.49402 6.58652 7.03385 7.15372 7.27991 7.48792 9.01199 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.026220 B = 0.006920 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.632015 B = 4045.348522 C = 4496.892378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.045 4.045 3 N -0.521 5.521 4 C 0.179 3.821 5 N -0.455 5.455 6 C -0.027 4.027 7 C 0.305 3.695 8 H 0.011 0.989 9 N -0.812 5.812 10 C -0.539 4.539 11 H 0.036 0.964 12 C 0.043 3.957 13 N -0.875 5.875 14 Si 0.945 3.055 15 H -0.276 1.276 16 H -0.280 1.280 17 H -0.274 1.274 18 C 0.097 3.903 19 C -0.118 4.118 20 C -0.089 4.089 21 H 0.074 0.926 22 C -0.136 4.136 23 C -0.020 4.020 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.307 0.693 28 H 0.331 0.669 29 H 0.258 0.742 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.856 10.062 2.131 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.172 4.172 3 N -0.242 5.242 4 C -0.084 4.084 5 N -0.138 5.138 6 C -0.145 4.145 7 C 0.193 3.807 8 H 0.029 0.971 9 N -0.340 5.340 10 C -0.578 4.578 11 H 0.055 0.945 12 C -0.162 4.162 13 N -0.510 5.510 14 Si 0.771 3.229 15 H -0.202 1.202 16 H -0.205 1.205 17 H -0.200 1.200 18 C -0.025 4.025 19 C -0.156 4.156 20 C -0.108 4.108 21 H 0.092 0.908 22 C -0.193 4.193 23 C -0.059 4.059 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.118 0.882 28 H 0.146 0.854 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.135 0.865 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.627 9.786 1.956 15.322 hybrid contribution -0.359 -0.430 -0.662 0.867 sum 11.268 9.355 1.294 14.703 Atomic orbital electron populations 1.20005 0.87541 1.02177 1.01756 1.20689 0.96978 0.88028 1.11491 1.69775 1.00976 1.31079 1.22371 1.23949 0.95542 0.82376 1.06485 1.45388 1.06564 1.07424 1.54460 1.23087 0.83691 1.00185 1.07529 1.17175 0.89932 0.81531 0.92036 0.97113 1.59272 1.09348 1.62389 1.02992 1.20891 1.45736 0.96630 0.94515 0.94546 1.25580 0.95008 0.96213 0.99387 1.70197 1.44342 1.03969 1.32517 0.85846 0.78821 0.77272 0.80953 1.20161 1.20546 1.19959 1.22116 0.82348 0.94891 1.03161 1.21980 0.97109 0.95869 1.00619 1.21226 0.95147 0.94477 0.99937 0.90790 1.21740 0.94837 1.00193 1.02553 1.20374 0.86148 0.95356 1.03978 0.91266 0.91551 0.91478 0.88229 0.85395 0.93279 0.90680 0.89646 0.91267 0.86516 0.91336 0.90896 0.91898 0.88928 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.27 8.71 71.23 0.62 -1.65 16 2 C -0.04 -2.02 7.04 41.40 0.29 -1.73 16 3 N -0.52 -22.48 11.24 -175.69 -1.98 -24.46 16 4 C 0.18 6.64 7.65 138.24 1.06 7.70 16 5 N -0.45 -17.86 3.13 -499.35 -1.57 -19.42 16 6 C -0.03 -1.23 5.86 41.09 0.24 -0.99 16 7 C 0.30 15.57 2.80 43.42 0.12 15.69 16 8 H 0.01 0.61 7.72 -2.39 -0.02 0.59 16 9 N -0.81 -39.30 8.47 -174.96 -1.48 -40.78 16 10 C -0.54 -30.09 8.19 25.60 0.21 -29.88 16 11 H 0.04 2.11 7.74 -2.91 -0.02 2.09 16 12 C 0.04 2.36 5.39 84.66 0.46 2.82 16 13 N -0.87 -50.49 12.77 21.45 0.27 -50.22 16 14 Si 0.95 43.87 29.54 68.60 2.03 45.89 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 18 C 0.10 2.98 6.47 86.47 0.56 3.54 16 19 C -0.12 -2.49 5.24 30.73 0.16 -2.33 16 20 C -0.09 -1.68 2.74 -10.62 -0.03 -1.71 16 21 H 0.07 1.45 8.12 -2.39 -0.02 1.43 16 22 C -0.14 -1.69 9.17 71.98 0.66 -1.03 16 23 C -0.02 -0.49 5.64 30.09 0.17 -0.32 16 24 H 0.07 2.47 8.02 -2.39 -0.02 2.46 16 25 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 26 H 0.07 2.90 6.23 -2.39 -0.01 2.88 16 27 H 0.31 13.59 9.06 -89.69 -0.81 12.78 16 28 H 0.33 15.32 5.54 -89.69 -0.50 14.82 16 29 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 30 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 33 H 0.12 1.73 8.12 -2.39 -0.02 1.71 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 2.11 8.11 -2.38 -0.02 2.09 16 38 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -68.46 303.46 1.55 -66.91 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: -0.25 Total: 31.95 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 4.52 Total: -9.88 kcal Atomic # 7 Polarization: -130.13 SS G_CDS: -4.75 Total: -134.88 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -68.46 1.55 -66.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260454213.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.703 kcal (2) G-P(sol) polarization free energy of solvation -68.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds