Wall clock time and date at job start Mon Mar 30 2020 03:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35320 * 126.12509 * 2 1 4 4 C 1.50695 * 126.04009 * 0.02562 * 3 2 1 5 5 C 1.53007 * 109.88005 * 175.67352 * 4 3 2 6 6 N 1.47440 * 109.88900 * 296.87249 * 4 3 2 7 7 C 1.47852 * 108.56651 * 118.41601 * 6 4 3 8 8 C 1.54908 * 104.79426 * 24.09683 * 7 6 4 9 9 C 1.54323 * 109.88929 * 54.64480 * 4 3 2 10 10 H 1.09001 * 110.70229 * 336.69377 * 9 4 3 11 11 C 1.50699 * 110.70408 * 99.92951 * 9 4 3 12 12 H 1.07995 * 120.00418 * 35.45886 * 11 9 4 13 13 C 1.37888 * 119.99668 * 215.45989 * 11 9 4 14 14 N 1.31510 * 120.00006 * 174.80481 * 13 11 9 15 15 Si 1.86802 * 119.99804 * 354.80553 * 13 11 9 16 16 H 1.48507 * 109.46741 * 94.81839 * 15 13 11 17 17 H 1.48498 * 109.46861 * 214.81597 * 15 13 11 18 18 H 1.48493 * 109.47213 * 334.82041 * 15 13 11 19 19 C 1.39875 * 107.91716 * 179.97438 * 3 2 1 20 20 N 1.30836 * 108.20246 * 0.02562 * 19 3 2 21 21 N 1.34951 * 126.12714 * 179.97438 * 2 1 3 22 22 C 1.46491 * 126.03839 * 0.26806 * 21 2 1 23 23 H 1.09001 * 109.47113 * 275.80515 * 1 2 3 24 24 H 1.09000 * 109.47097 * 35.80476 * 1 2 3 25 25 H 1.09003 * 109.46756 * 155.80861 * 1 2 3 26 26 H 1.09007 * 109.46679 * 64.55198 * 5 4 3 27 27 H 1.09000 * 109.47124 * 184.54915 * 5 4 3 28 28 H 1.08995 * 109.46987 * 304.55647 * 5 4 3 29 29 H 1.00901 * 111.00363 * 240.68417 * 6 4 3 30 30 H 1.08994 * 110.37307 * 265.27123 * 7 6 4 31 31 H 1.08994 * 110.46493 * 142.97266 * 7 6 4 32 32 H 1.08995 * 110.98998 * 204.83450 * 8 7 6 33 33 H 1.09000 * 111.02460 * 81.03427 * 8 7 6 34 34 H 0.96997 * 119.99924 * 180.02562 * 14 13 11 35 35 H 1.08002 * 125.89264 * 179.97438 * 19 3 2 36 36 H 1.09000 * 109.47093 * 269.71484 * 22 21 2 37 37 H 1.09001 * 109.47526 * 29.71023 * 22 21 2 38 38 H 1.09002 * 109.47413 * 149.71238 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 0.0005 5 6 3.0497 3.4623 0.1089 6 7 1.0925 2.8134 -1.2359 7 6 -0.2881 3.1962 -0.8705 8 6 -0.1810 3.7241 0.5819 9 6 0.8835 2.7698 1.1845 10 1 0.4248 1.8348 1.5063 11 6 1.6060 3.4324 2.3291 12 1 2.3829 4.1558 2.1309 13 6 1.2751 3.1149 3.6294 14 7 1.9725 3.6145 4.6262 15 14 -0.1639 1.9750 3.9752 16 1 0.3329 0.5844 4.1325 17 1 -0.8443 2.4018 5.2243 18 1 -1.1240 2.0326 2.8439 19 6 3.6334 0.6560 0.0006 20 7 3.6333 -0.6524 0.0004 21 7 2.3026 -1.0900 0.0005 22 6 1.8539 -2.4845 -0.0044 23 1 -0.3633 0.1039 1.0224 24 1 -0.3633 0.8335 -0.6012 25 1 -0.3633 -0.9375 -0.4211 26 1 3.6722 3.3564 -0.7796 27 1 2.7046 4.4930 0.1901 28 1 3.6317 3.2031 0.9933 29 1 1.5404 3.5426 -1.7705 30 1 -0.9459 2.3281 -0.9112 31 1 -0.6542 3.9802 -1.5333 32 1 -1.1329 3.6267 1.1038 33 1 0.1668 4.7570 0.5979 34 1 1.7399 3.3908 5.5409 35 1 4.5083 1.2892 0.0004 36 1 1.7436 -2.8343 1.0220 37 1 0.8949 -2.5559 -0.5175 38 1 2.5893 -3.1010 -0.5214 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260462245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:58 Heat of formation + Delta-G solvation = 61.859055 kcal Electronic energy + Delta-G solvation = -19559.114196 eV Core-core repulsion = 16823.379348 eV Total energy + Delta-G solvation = -2735.734848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.27620 -39.71081 -34.67502 -34.49112 -32.98249 -31.79340 -31.37973 -27.63490 -27.37678 -26.93469 -25.30997 -22.58342 -21.39525 -20.90613 -19.53211 -18.79968 -17.26737 -16.83495 -16.54423 -16.02844 -15.85700 -15.08830 -14.92189 -14.75146 -14.34428 -13.89535 -13.66974 -13.44516 -13.31721 -13.15131 -13.03221 -12.99048 -12.85922 -12.57380 -12.24503 -12.04723 -11.65733 -11.55707 -11.50932 -11.02201 -10.75503 -10.60333 -10.02543 -9.21662 -8.99155 -8.21166 -6.18480 1.04839 1.30186 1.32250 1.42288 1.79822 1.99648 2.37936 3.13724 3.63864 3.76439 3.94104 4.11147 4.27302 4.33937 4.39043 4.45208 4.51183 4.55430 4.65813 4.69273 4.70700 4.78854 4.96007 5.05491 5.06563 5.12502 5.23975 5.38608 5.43863 5.53006 5.55482 5.64487 5.77116 5.90032 6.23760 6.32706 6.45571 6.76245 6.87575 6.90398 7.43861 8.94736 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.010817 C = 0.009462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.628142 B = 2587.924986 C = 2958.443116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.084 3.916 3 C -0.205 4.205 4 C 0.189 3.811 5 C -0.128 4.128 6 N -0.672 5.672 7 C 0.049 3.951 8 C -0.153 4.153 9 C 0.006 3.994 10 H 0.041 0.959 11 C -0.490 4.490 12 H 0.053 0.947 13 C 0.009 3.991 14 N -0.953 5.953 15 Si 0.922 3.078 16 H -0.285 1.285 17 H -0.293 1.293 18 H -0.232 1.232 19 C 0.040 3.960 20 N -0.335 5.335 21 N -0.385 5.385 22 C 0.093 3.907 23 H 0.062 0.938 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.340 0.660 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.259 0.741 35 H 0.184 0.816 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.879 -8.004 -12.667 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.044 4.044 3 C -0.217 4.217 4 C 0.097 3.903 5 C -0.186 4.186 6 N -0.301 5.301 7 C -0.080 4.080 8 C -0.193 4.193 9 C -0.014 4.014 10 H 0.060 0.940 11 C -0.529 4.529 12 H 0.071 0.929 13 C -0.187 4.187 14 N -0.595 5.595 15 Si 0.748 3.252 16 H -0.211 1.211 17 H -0.220 1.220 18 H -0.155 1.155 19 C -0.145 4.145 20 N -0.157 5.157 21 N -0.169 5.169 22 C -0.047 4.047 23 H 0.080 0.920 24 H 0.121 0.879 25 H 0.112 0.888 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.157 0.843 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.201 0.799 36 H 0.093 0.907 37 H 0.130 0.870 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.345 -9.901 -12.670 16.945 hybrid contribution -0.363 1.399 1.527 2.102 sum -5.708 -8.503 -11.143 15.134 Atomic orbital electron populations 1.20775 0.86353 1.05458 1.02837 1.21040 0.95413 0.86814 1.01115 1.19841 0.91956 0.95391 1.14511 1.19546 0.93232 0.88782 0.88726 1.21979 0.97794 0.98325 1.00490 1.61785 1.02742 1.46302 1.19247 1.22974 0.91019 0.99652 0.94322 1.23330 0.99232 0.99643 0.97063 1.20406 0.92969 0.94970 0.93031 0.94042 1.21436 1.18706 1.22671 0.90042 0.92901 1.25833 0.98686 0.97674 0.96490 1.70052 1.41884 1.48086 0.99434 0.86098 0.81651 0.79075 0.78359 1.21100 1.21981 1.15454 1.23899 0.98557 0.92025 0.99977 1.77132 0.98158 1.13174 1.27264 1.48624 1.03337 1.07061 1.57922 1.22100 1.02334 0.76315 1.03928 0.91974 0.87944 0.88771 0.92144 0.93684 0.93663 0.84313 0.90114 0.89976 0.92546 0.92967 0.93193 0.79933 0.90713 0.87006 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.71 8.61 71.23 0.61 -2.10 16 2 C 0.08 2.94 6.64 41.40 0.28 3.22 16 3 C -0.21 -7.97 5.04 -20.14 -0.10 -8.07 16 4 C 0.19 7.16 0.86 3.13 0.00 7.17 16 5 C -0.13 -4.89 5.86 71.98 0.42 -4.47 16 6 N -0.67 -20.88 6.59 -464.88 -3.06 -23.94 16 7 C 0.05 1.40 6.92 86.77 0.60 2.01 16 8 C -0.15 -5.67 6.51 31.98 0.21 -5.47 16 9 C 0.01 0.28 1.56 -10.36 -0.02 0.26 16 10 H 0.04 1.84 2.72 -2.39 -0.01 1.83 16 11 C -0.49 -26.58 7.85 25.60 0.20 -26.38 16 12 H 0.05 3.13 5.87 -2.91 -0.02 3.11 16 13 C 0.01 0.52 5.47 84.66 0.46 0.98 16 14 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 15 Si 0.92 44.04 27.10 68.60 1.86 45.90 16 16 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 17 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 18 H -0.23 -9.78 6.56 99.48 0.65 -9.12 16 19 C 0.04 1.55 10.99 85.24 0.94 2.49 16 20 N -0.34 -12.84 12.57 -57.02 -0.72 -13.56 16 21 N -0.39 -12.86 4.01 -356.05 -1.43 -14.29 16 22 C 0.09 2.01 11.27 127.77 1.44 3.45 16 23 H 0.06 1.90 7.19 -2.39 -0.02 1.88 16 24 H 0.10 2.83 4.29 -2.39 -0.01 2.82 16 25 H 0.09 1.90 6.92 -2.39 -0.02 1.88 16 26 H 0.06 1.94 8.09 -2.38 -0.02 1.92 16 27 H 0.04 1.75 7.56 -2.39 -0.02 1.73 16 28 H 0.04 2.00 6.81 -2.39 -0.02 1.98 16 29 H 0.34 9.52 8.23 -89.69 -0.74 8.78 16 30 H 0.08 2.12 5.83 -2.39 -0.01 2.11 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 2.05 7.99 -2.39 -0.02 2.03 16 33 H 0.05 2.02 8.04 -2.39 -0.02 2.01 16 34 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.18 6.42 7.46 -2.91 -0.02 6.40 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.11 1.69 6.96 -2.39 -0.02 1.67 16 38 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -69.85 289.30 2.28 -67.57 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.29 Total: 24.61 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 5.04 Total: -26.93 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -4.91 Total: -111.15 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.86 Total: 45.90 kcal Total: -69.85 2.28 -67.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.430 kcal (2) G-P(sol) polarization free energy of solvation -69.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds